DUF1785
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ArgoN | PF16486 | 146 - 283 | 4e-37 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 294 - 342 | 7.7e-19 | Argonaute linker 1 domain |
| PAZ | PF02170 | 370 - 473 | 9.3e-27 | PAZ domain |
| ArgoL2 | PF16488 | 483 - 530 | 2.6e-13 | Argonaute linker 2 domain |
| ArgoMid | PF16487 | 540 - 618 | 4.9e-09 | Mid domain of argonaute |
| Piwi | PF02171 | 637 - 951 | 7.9e-108 | Piwi domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 737, 3092 |
| Acc16I | TGCGCA | 1 cut(s) | 2820 |
| AccB1I | GGYRCC | 9 cut(s) | 115, 127, 139, 151, 199, 250, 301, 313, 1667 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2174 |
| AccBSI | CCGCTC | 1 cut(s) | 2787 |
| AccI | GTMKAC | 1 cut(s) | 3165 |
| AccII | CGCG | 8 cut(s) | 12, 33, 48, 54, 60, 176, 188, 795 |
| AclWI | GGATC | 8 cut(s) | 712, 1022, 1749, 1945, 3016, 3200, 3204, 3227 |
| AcoI | YGGCCR | 4 cut(s) | 49, 55, 2225, 2380 |
| AcsI | RAATTY | 4 cut(s) | 1517, 1959, 2636, 2667 |
| AcuI | CTGAAG | 7 cut(s) | 540, 1136, 1487, 1886, 2707, 2865, 3008 |
| AcvI | CACGTG | 1 cut(s) | 1712 |
| AcyI | GRCGYC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| AfaI | GTAC | 6 cut(s) | 211, 575, 1070, 1274, 1803, 2602 |
| AflII | CTTAAG | 2 cut(s) | 1871, 2051 |
| AgeI | ACCGGT | 1 cut(s) | 3272 |
| AgsI | TTSAA | 8 cut(s) | 569, 660, 736, 929, 1313, 2039, 2594, 3046 |
| AjnI | CCWGG | 6 cut(s) | 588, 936, 1082, 1369, 1622, 2596 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 356, 388, 1959, 1991 |
| AleI | CACNNNNGTG | 1 cut(s) | 1734 |
| Alw21I | GWGCWC | 5 cut(s) | 242, 2783, 2842, 2940, 3251 |
| Alw44I | GTGCAC | 3 cut(s) | 2779, 2936, 3247 |
| AlwI | GGATC | 8 cut(s) | 712, 1022, 1749, 1945, 3016, 3200, 3204, 3227 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2603 |
| Ama87I | CYCGRG | 2 cut(s) | 915, 1443 |
| ApaLI | GTGCAC | 3 cut(s) | 2779, 2936, 3247 |
| ApoI | RAATTY | 4 cut(s) | 1517, 1959, 2636, 2667 |
| AseI | ATTAAT | 1 cut(s) | 2058 |
| AsiGI | ACCGGT | 1 cut(s) | 3272 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2720 |
| AspS9I | GGNCC | 8 cut(s) | 641, 911, 1440, 1686, 1946, 2324, 2923, 3266 |
| AsuC2I | CCSGG | 7 cut(s) | 81, 163, 417, 640, 1444, 1445, 3026 |
| AsuHPI | GGTGA | 6 cut(s) | 578, 932, 1051, 1486, 2431, 2740 |
| AsuII | TTCGAA | 1 cut(s) | 3075 |
| AsuNHI | GCTAGC | 1 cut(s) | 2965 |
| AvaI | CYCGRG | 2 cut(s) | 915, 1443 |
| AvaII | GGWCC | 4 cut(s) | 911, 1946, 2923, 3266 |
| AxyI | CCTNAGG | 1 cut(s) | 968 |
| BaeGI | GKGCMC | 3 cut(s) | 2783, 2940, 3251 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 1170, 1203, 1227, 1260, 2592, 2625 |
| BalI | TGGCCA | 2 cut(s) | 2227, 2382 |
| BanI | GGYRCC | 9 cut(s) | 115, 127, 139, 151, 199, 250, 301, 313, 1667 |
| BanII | GRGCYC | 1 cut(s) | 3282 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 614, 646 |
| BbrPI | CACGTG | 1 cut(s) | 1712 |
| BbsI | GAAGAC | 2 cut(s) | 1082, 2187 |
| Bbv12I | GWGCWC | 5 cut(s) | 242, 2783, 2842, 2940, 3251 |
| BceAI | ACGGC | 4 cut(s) | 380, 1454, 3151, 3267 |
| BciT130I | CCWGG | 6 cut(s) | 590, 938, 1084, 1371, 1624, 2598 |
| BciVI | GTATCC | 2 cut(s) | 1609, 2605 |
| BclI | TGATCA | 2 cut(s) | 1644, 2343 |
| BcnI | CCSGG | 7 cut(s) | 81, 163, 417, 640, 1444, 1445, 3026 |
| BfaI | CTAG | 3 cut(s) | 1560, 2825, 2966 |
| BfmI | CTRYAG | 4 cut(s) | 276, 708, 779, 2407 |
| BfoI | RGCGCY | 7 cut(s) | 119, 131, 143, 155, 203, 254, 305 |
| BfrI | CTTAAG | 2 cut(s) | 1871, 2051 |
| BfuI | GTATCC | 2 cut(s) | 1609, 2605 |
| BglII | AGATCT | 2 cut(s) | 487, 2290 |
| Bme18I | GGWCC | 4 cut(s) | 911, 1946, 2923, 3266 |
| BmeT110I | CYCGRG | 2 cut(s) | 915, 1443 |
| BmgT120I | GGNCC | 8 cut(s) | 641, 911, 1440, 1686, 1946, 2324, 2923, 3266 |
| BmrI | ACTGGG | 1 cut(s) | 1984 |
| BmsI | GCATC | 8 cut(s) | 502, 536, 1467, 1546, 2086, 2452, 2548, 2830 |
| BmtI | GCTAGC | 1 cut(s) | 2969 |
| BmuI | ACTGGG | 1 cut(s) | 1984 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3161 |
| BpiI | GAAGAC | 2 cut(s) | 1082, 2187 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2101, 2133 |
| BpmI | CTGGAG | 3 cut(s) | 967, 1203, 3249 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1095, 2004 |
| Bpu14I | TTCGAA | 1 cut(s) | 3075 |
| BpuEI | CTTGAG | 2 cut(s) | 1094, 1244 |
| BpuMI | CCSGG | 7 cut(s) | 81, 163, 417, 640, 1444, 1445, 3026 |
| BsaAI | YACGTR | 1 cut(s) | 1712 |
| BsaBI | GATNNNNATC | 4 cut(s) | 492, 1916, 2646, 3102 |
| BsaHI | GRCGYC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| BsaI | GGTCTC | 3 cut(s) | 815, 2239, 3149 |
| BsaWI | WCCGGW | 3 cut(s) | 23, 3158, 3272 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1176, 1206, 2142, 2172, 2483, 2513 |
| Bse118I | RCCGGY | 5 cut(s) | 202, 253, 304, 2326, 3272 |
| Bse1I | ACTGG | 9 cut(s) | 407, 950, 1186, 1207, 1554, 1990, 2228, 2383, 2510 |
| Bse21I | CCTNAGG | 1 cut(s) | 968 |
| Bse3DI | GCAATG | 3 cut(s) | 644, 1327, 2358 |
| Bse8I | GATNNNNATC | 4 cut(s) | 492, 1916, 2646, 3102 |
| BseBI | CCWGG | 6 cut(s) | 590, 938, 1084, 1371, 1624, 2598 |
| BseJI | GATNNNNATC | 4 cut(s) | 492, 1916, 2646, 3102 |
| BseMI | GCAATG | 3 cut(s) | 644, 1327, 2358 |
| BseNI | ACTGG | 9 cut(s) | 407, 950, 1186, 1207, 1554, 1990, 2228, 2383, 2510 |
| BseRI | GAGGAG | 2 cut(s) | 2122, 2507 |
| BseSI | GKGCMC | 3 cut(s) | 2783, 2940, 3251 |
| BseX3I | CGGCCG | 2 cut(s) | 49, 55 |
| BseYI | CCCAGC | 2 cut(s) | 2174, 2686 |
| BsgI | GTGCAG | 4 cut(s) | 840, 1214, 2549, 2895 |
| Bsh1236I | CGCG | 8 cut(s) | 12, 33, 48, 54, 60, 176, 188, 795 |
| Bsh1285I | CGRYCG | 3 cut(s) | 52, 58, 3273 |
| BshNI | GGYRCC | 9 cut(s) | 115, 127, 139, 151, 199, 250, 301, 313, 1667 |
| BshTI | ACCGGT | 1 cut(s) | 3272 |
| BsiEI | CGRYCG | 3 cut(s) | 52, 58, 3273 |
| BsiHKAI | GWGCWC | 5 cut(s) | 242, 2783, 2842, 2940, 3251 |
| BsiHKCI | CYCGRG | 2 cut(s) | 915, 1443 |
| BslFI | GGGAC | 3 cut(s) | 897, 1896, 1932 |
| BsmBI | CGTCTC | 2 cut(s) | 1990, 3078 |
| BsmFI | GGGAC | 3 cut(s) | 897, 1896, 1932 |
| BsmI | GAATGC | 4 cut(s) | 606, 1530, 2363, 3071 |
| Bso31I | GGTCTC | 3 cut(s) | 815, 2239, 3149 |
| BsoBI | CYCGRG | 2 cut(s) | 915, 1443 |
| Bsp119I | TTCGAA | 1 cut(s) | 3075 |
| Bsp1286I | GDGCHC | 6 cut(s) | 242, 2783, 2842, 2940, 3251, 3282 |
| Bsp1407I | TGTACA | 1 cut(s) | 1801 |
| Bsp19I | CCATGG | 2 cut(s) | 1347, 3258 |
| BspFNI | CGCG | 8 cut(s) | 12, 33, 48, 54, 60, 176, 188, 795 |
| BspMAI | CTGCAG | 2 cut(s) | 712, 783 |
| BspOI | GCTAGC | 1 cut(s) | 2969 |
| BspPI | GGATC | 8 cut(s) | 712, 1022, 1749, 1945, 3016, 3200, 3204, 3227 |
| BspT104I | TTCGAA | 1 cut(s) | 3075 |
| BspT107I | GGYRCC | 9 cut(s) | 115, 127, 139, 151, 199, 250, 301, 313, 1667 |
| BspTI | CTTAAG | 2 cut(s) | 1871, 2051 |
| BspTNI | GGTCTC | 3 cut(s) | 815, 2239, 3149 |
| BsrBI | CCGCTC | 1 cut(s) | 2787 |
| BsrDI | GCAATG | 3 cut(s) | 644, 1327, 2358 |
| BsrFI | RCCGGY | 5 cut(s) | 202, 253, 304, 2326, 3272 |
| BsrGI | TGTACA | 1 cut(s) | 1801 |
| BsrI | ACTGG | 9 cut(s) | 407, 950, 1186, 1207, 1554, 1990, 2228, 2383, 2510 |
| BssAI | RCCGGY | 5 cut(s) | 202, 253, 304, 2326, 3272 |
| BssNI | GRCGYC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| BssT1I | CCWWGG | 4 cut(s) | 390, 1347, 2146, 3258 |
| Bst2UI | CCWGG | 6 cut(s) | 590, 938, 1084, 1371, 1624, 2598 |
| Bst4CI | ACNGT | 9 cut(s) | 244, 875, 1293, 1763, 1806, 2086, 2186, 2605, 3143 |
| Bst6I | CTCTTC | 7 cut(s) | 58, 64, 354, 617, 661, 1382, 3051 |
| BstACI | GRCGYC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| BstAFI | CTTAAG | 2 cut(s) | 1871, 2051 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1334, 2210 |
| BstAUI | TGTACA | 1 cut(s) | 1801 |
| BstBAI | YACGTR | 1 cut(s) | 1712 |
| BstBI | TTCGAA | 1 cut(s) | 3075 |
| BstDSI | CCRYGG | 5 cut(s) | 46, 52, 58, 1347, 3258 |
| BstEII | GGTNACC | 1 cut(s) | 920 |
| BstFNI | CGCG | 8 cut(s) | 12, 33, 48, 54, 60, 176, 188, 795 |
| BstH2I | RGCGCY | 7 cut(s) | 119, 131, 143, 155, 203, 254, 305 |
| BstMCI | CGRYCG | 3 cut(s) | 52, 58, 3273 |
| BstNI | CCWGG | 6 cut(s) | 590, 938, 1084, 1371, 1624, 2598 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3161 |
| BstPI | GGTNACC | 1 cut(s) | 920 |
| BstSFI | CTRYAG | 4 cut(s) | 276, 708, 779, 2407 |
| BstSLI | GKGCMC | 3 cut(s) | 2783, 2940, 3251 |
| BstUI | CGCG | 8 cut(s) | 12, 33, 48, 54, 60, 176, 188, 795 |
| BstV2I | GAAGAC | 2 cut(s) | 1082, 2187 |
| BstX2I | RGATCY | 9 cut(s) | 487, 704, 1741, 1937, 2290, 3021, 3196, 3205, 3232 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1354, 1598 |
| BstYI | RGATCY | 9 cut(s) | 487, 704, 1741, 1937, 2290, 3021, 3196, 3205, 3232 |
| BstZI | CGGCCG | 2 cut(s) | 49, 55 |
| Bsu36I | CCTNAGG | 1 cut(s) | 968 |
| BsuI | GTATCC | 2 cut(s) | 1609, 2605 |
| BtgI | CCRYGG | 5 cut(s) | 46, 52, 58, 1347, 3258 |
| BtgZI | GCGATG | 1 cut(s) | 3044 |
| BtsI | GCAGTG | 4 cut(s) | 633, 2211, 2911, 3006 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2603 |
| CciNI | GCGGCCGC | 2 cut(s) | 49, 55 |
| Cfr10I | RCCGGY | 5 cut(s) | 202, 253, 304, 2326, 3272 |
| Cfr13I | GGNCC | 8 cut(s) | 641, 911, 1440, 1686, 1946, 2324, 2923, 3266 |
| Cfr42I | CCGCGG | 3 cut(s) | 49, 55, 61 |
| Cfr9I | CCCGGG | 1 cut(s) | 1443 |
| CseI | GACGC | 1 cut(s) | 1334 |
| CsiI | ACCWGGT | 1 cut(s) | 2596 |
| Csp6I | GTAC | 6 cut(s) | 210, 574, 1069, 1273, 1802, 2601 |
| CspAI | ACCGGT | 1 cut(s) | 3272 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2053, 2088 |
| CviAII | CATG | 8 cut(s) | 806, 1348, 1592, 1635, 1642, 2660, 2699, 3259 |
| CviQI | GTAC | 6 cut(s) | 210, 574, 1069, 1273, 1802, 2601 |
| DinI | GGCGCC | 7 cut(s) | 117, 129, 141, 153, 201, 252, 303 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 737, 3092 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 737, 3092 |
| EaeI | YGGCCR | 4 cut(s) | 49, 55, 2225, 2380 |
| EagI | CGGCCG | 2 cut(s) | 49, 55 |
| Eam1104I | CTCTTC | 7 cut(s) | 58, 64, 354, 617, 661, 1382, 3051 |
| EarI | CTCTTC | 7 cut(s) | 58, 64, 354, 617, 661, 1382, 3051 |
| EciI | GGCGGA | 2 cut(s) | 54, 258 |
| EclXI | CGGCCG | 2 cut(s) | 49, 55 |
| Eco130I | CCWWGG | 4 cut(s) | 390, 1347, 2146, 3258 |
| Eco147I | AGGCCT | 2 cut(s) | 1333, 2477 |
| Eco24I | GRGCYC | 1 cut(s) | 3282 |
| Eco31I | GGTCTC | 3 cut(s) | 815, 2239, 3149 |
| Eco32I | GATATC | 1 cut(s) | 1006 |
| Eco47I | GGWCC | 4 cut(s) | 911, 1946, 2923, 3266 |
| Eco52I | CGGCCG | 2 cut(s) | 49, 55 |
| Eco57I | CTGAAG | 7 cut(s) | 540, 1136, 1487, 1886, 2707, 2865, 3008 |
| Eco72I | CACGTG | 1 cut(s) | 1712 |
| Eco81I | CCTNAGG | 1 cut(s) | 968 |
| Eco88I | CYCGRG | 2 cut(s) | 915, 1443 |
| Eco91I | GGTNACC | 1 cut(s) | 920 |
| EcoO109I | RGGNCCY | 1 cut(s) | 911 |
| EcoO65I | GGTNACC | 1 cut(s) | 920 |
| EcoRI | GAATTC | 1 cut(s) | 2667 |
| EcoRII | CCWGG | 6 cut(s) | 588, 936, 1082, 1369, 1622, 2596 |
| EcoRV | GATATC | 1 cut(s) | 1006 |
| EcoT14I | CCWWGG | 4 cut(s) | 390, 1347, 2146, 3258 |
| EcoT38I | GRGCYC | 1 cut(s) | 3282 |
| EgeI | GGCGCC | 7 cut(s) | 117, 129, 141, 153, 201, 252, 303 |
| EheI | GGCGCC | 7 cut(s) | 117, 129, 141, 153, 201, 252, 303 |
| ErhI | CCWWGG | 4 cut(s) | 390, 1347, 2146, 3258 |
| Esp3I | CGTCTC | 2 cut(s) | 1990, 3078 |
| FaeI | CATG | 8 cut(s) | 809, 1351, 1595, 1638, 1645, 2663, 2702, 3262 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 351, 383, 1321, 1353 |
| FaqI | GGGAC | 3 cut(s) | 897, 1896, 1932 |
| FatI | CATG | 8 cut(s) | 805, 1347, 1591, 1634, 1641, 2659, 2698, 3258 |
| FauI | CCCGC | 3 cut(s) | 181, 193, 2792 |
| FauNDI | CATATG | 2 cut(s) | 610, 2770 |
| FbaI | TGATCA | 2 cut(s) | 1644, 2343 |
| FblI | GTMKAC | 1 cut(s) | 3165 |
| FriOI | GRGCYC | 1 cut(s) | 3282 |
| FspAI | RTGCGCAY | 1 cut(s) | 2820 |
| FspBI | CTAG | 3 cut(s) | 1560, 2825, 2966 |
| FspI | TGCGCA | 1 cut(s) | 2820 |
| GsaI | CCCAGC | 2 cut(s) | 2178, 2690 |
| GsuI | CTGGAG | 3 cut(s) | 967, 1203, 3249 |
| HaeII | RGCGCY | 7 cut(s) | 119, 131, 143, 155, 203, 254, 305 |
| HgaI | GACGC | 1 cut(s) | 1334 |
| Hin1I | GRCGYC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| Hin1II | CATG | 8 cut(s) | 809, 1351, 1595, 1638, 1645, 2663, 2702, 3262 |
| HincII | GTYRAC | 2 cut(s) | 1212, 3166 |
| HindII | GTYRAC | 2 cut(s) | 1212, 3166 |
| HindIII | AAGCTT | 3 cut(s) | 365, 2018, 2917 |
| HphI | GGTGA | 6 cut(s) | 578, 932, 1051, 1486, 2431, 2740 |
| Hpy166II | GTNNAC | 7 cut(s) | 1212, 1218, 1510, 2781, 2938, 3166, 3249 |
| Hpy8I | GTNNAC | 7 cut(s) | 1212, 1218, 1510, 2781, 2938, 3166, 3249 |
| Hpy99I | CGWCG | 5 cut(s) | 238, 289, 385, 3098, 3170 |
| HpyAV | CCTTC | 8 cut(s) | 661, 686, 711, 1319, 2420, 2467, 2936, 3071 |
| HpyCH4III | ACNGT | 9 cut(s) | 244, 875, 1293, 1763, 1806, 2086, 2186, 2605, 3143 |
| HpyCH4IV | ACGT | 2 cut(s) | 1214, 1711 |
| HpySE526I | ACGT | 2 cut(s) | 1214, 1711 |
| Hsp92I | GRCGYC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| Hsp92II | CATG | 8 cut(s) | 809, 1351, 1595, 1638, 1645, 2663, 2702, 3262 |
| KasI | GGCGCC | 7 cut(s) | 115, 127, 139, 151, 199, 250, 301 |
| KflI | GGGWCCC | 1 cut(s) | 911 |
| KroI | GCCGGC | 3 cut(s) | 202, 253, 304 |
| KroNI | GCCGGC | 3 cut(s) | 204, 255, 306 |
| Ksp22I | TGATCA | 2 cut(s) | 1644, 2343 |
| KspI | CCGCGG | 3 cut(s) | 49, 55, 61 |
| LweI | GCATC | 8 cut(s) | 502, 536, 1467, 1546, 2086, 2452, 2548, 2830 |
| MabI | ACCWGGT | 1 cut(s) | 2596 |
| MaeI | CTAG | 3 cut(s) | 1560, 2825, 2966 |
| MaeII | ACGT | 2 cut(s) | 1214, 1711 |
| MaeIII | GTNAC | 8 cut(s) | 920, 1039, 1141, 1408, 1997, 2158, 2512, 3220 |
| MbiI | CCGCTC | 1 cut(s) | 2787 |
| MfeI | CAATTG | 3 cut(s) | 1362, 3210, 3237 |
| MflI | RGATCY | 9 cut(s) | 487, 704, 1741, 1937, 2290, 3021, 3196, 3205, 3232 |
| MhlI | GDGCHC | 6 cut(s) | 242, 2783, 2842, 2940, 3251, 3282 |
| MlsI | TGGCCA | 2 cut(s) | 2227, 2382 |
| MluNI | TGGCCA | 2 cut(s) | 2227, 2382 |
| Mly113I | GGCGCC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| MlyI | GAGTC | 4 cut(s) | 450, 590, 1386, 3171 |
| MmeI | TCCRAC | 3 cut(s) | 2654, 3043, 3293 |
| Mox20I | TGGCCA | 2 cut(s) | 2227, 2382 |
| MroNI | GCCGGC | 3 cut(s) | 202, 253, 304 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2720 |
| MscI | TGGCCA | 2 cut(s) | 2227, 2382 |
| MslI | CAYNNNNRTG | 6 cut(s) | 498, 501, 830, 1596, 1734, 2697 |
| Msp20I | TGGCCA | 2 cut(s) | 2227, 2382 |
| MspA1I | CMGCKG | 6 cut(s) | 48, 54, 60, 275, 562, 2898 |
| MspCI | CTTAAG | 2 cut(s) | 1871, 2051 |
| MunI | CAATTG | 3 cut(s) | 1362, 3210, 3237 |
| Mva1269I | GAATGC | 4 cut(s) | 606, 1530, 2363, 3071 |
| MvaI | CCWGG | 6 cut(s) | 590, 938, 1084, 1371, 1624, 2598 |
| MvnI | CGCG | 8 cut(s) | 12, 33, 48, 54, 60, 176, 188, 795 |
| NaeI | GCCGGC | 3 cut(s) | 204, 255, 306 |
| NarI | GGCGCC | 7 cut(s) | 116, 128, 140, 152, 200, 251, 302 |
| NciI | CCSGG | 7 cut(s) | 81, 163, 417, 640, 1444, 1445, 3026 |
| NcoI | CCATGG | 2 cut(s) | 1347, 3258 |
| NdeI | CATATG | 2 cut(s) | 610, 2770 |
| NgoMIV | GCCGGC | 3 cut(s) | 202, 253, 304 |
| NheI | GCTAGC | 1 cut(s) | 2965 |
| NlaIII | CATG | 8 cut(s) | 809, 1351, 1595, 1638, 1645, 2663, 2702, 3262 |
| NmuCI | GTSAC | 5 cut(s) | 920, 1039, 1408, 2158, 3220 |
| NotI | GCGGCCGC | 2 cut(s) | 49, 55 |
| NsbI | TGCGCA | 1 cut(s) | 2820 |
| NspV | TTCGAA | 1 cut(s) | 3075 |
| OliI | CACNNNNGTG | 1 cut(s) | 1734 |
| PceI | AGGCCT | 2 cut(s) | 1333, 2477 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3093, 3099 |
| PctI | GAATGC | 4 cut(s) | 606, 1530, 2363, 3071 |
| PdiI | GCCGGC | 3 cut(s) | 204, 255, 306 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2720 |
| PflFI | GACNNNGTC | 1 cut(s) | 3089 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2174 |
| PinAI | ACCGGT | 1 cut(s) | 3272 |
| PleI | GAGTC | 4 cut(s) | 449, 589, 1386, 3170 |
| PluTI | GGCGCC | 7 cut(s) | 119, 131, 143, 155, 203, 254, 305 |
| PmaCI | CACGTG | 1 cut(s) | 1712 |
| PmlI | CACGTG | 1 cut(s) | 1712 |
| PpsI | GAGTC | 4 cut(s) | 449, 589, 1386, 3170 |
| Ppu21I | YACGTR | 1 cut(s) | 1712 |
| PpuMI | RGGWCCY | 1 cut(s) | 911 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3161 |
| PshBI | ATTAAT | 1 cut(s) | 2058 |
| Psp5II | RGGWCCY | 1 cut(s) | 911 |
| Psp6I | CCWGG | 6 cut(s) | 588, 936, 1082, 1369, 1622, 2596 |
| PspCI | CACGTG | 1 cut(s) | 1712 |
| PspEI | GGTNACC | 1 cut(s) | 920 |
| PspFI | CCCAGC | 2 cut(s) | 2174, 2686 |
| PspGI | CCWGG | 6 cut(s) | 588, 936, 1082, 1369, 1622, 2596 |
| PspPI | GGNCC | 8 cut(s) | 641, 911, 1440, 1686, 1946, 2324, 2923, 3266 |
| PspPPI | RGGWCCY | 1 cut(s) | 911 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1236, 1268 |
| PstI | CTGCAG | 2 cut(s) | 712, 783 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2603 |
| PsuI | RGATCY | 9 cut(s) | 487, 704, 1741, 1937, 2290, 3021, 3196, 3205, 3232 |
| PsyI | GACNNNGTC | 1 cut(s) | 3089 |
| PvuII | CAGCTG | 2 cut(s) | 275, 562 |
| RsaI | GTAC | 6 cut(s) | 211, 575, 1070, 1274, 1803, 2602 |
| RsaNI | GTAC | 6 cut(s) | 210, 574, 1069, 1273, 1802, 2601 |
| RseI | CAYNNNNRTG | 6 cut(s) | 498, 501, 830, 1596, 1734, 2697 |
| SacII | CCGCGG | 3 cut(s) | 49, 55, 61 |
| SalI | GTCGAC | 1 cut(s) | 3164 |
| Sau96I | GGNCC | 8 cut(s) | 641, 911, 1440, 1686, 1946, 2324, 2923, 3266 |
| SchI | GAGTC | 4 cut(s) | 450, 590, 1386, 3171 |
| SduI | GDGCHC | 6 cut(s) | 242, 2783, 2842, 2940, 3251, 3282 |
| SexAI | ACCWGGT | 1 cut(s) | 2596 |
| SfaNI | GCATC | 8 cut(s) | 502, 536, 1467, 1546, 2086, 2452, 2548, 2830 |
| SfcI | CTRYAG | 4 cut(s) | 276, 708, 779, 2407 |
| SfoI | GGCGCC | 7 cut(s) | 117, 129, 141, 153, 201, 252, 303 |
| Sfr303I | CCGCGG | 3 cut(s) | 49, 55, 61 |
| SfuI | TTCGAA | 1 cut(s) | 3075 |
| SgrBI | CCGCGG | 3 cut(s) | 49, 55, 61 |
| SinI | GGWCC | 4 cut(s) | 911, 1946, 2923, 3266 |
| SmaI | CCCGGG | 1 cut(s) | 1445 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 498, 501, 830, 1596, 1734, 2697 |
| SmlI | CTYRAG | 4 cut(s) | 1109, 1223, 1871, 2051 |
| SmoI | CTYRAG | 4 cut(s) | 1109, 1223, 1871, 2051 |
| SseBI | AGGCCT | 2 cut(s) | 1333, 2477 |
| SspDI | GGCGCC | 7 cut(s) | 115, 127, 139, 151, 199, 250, 301 |
| SspI | AATATT | 2 cut(s) | 1279, 2590 |
| SspMI | CTAG | 3 cut(s) | 1560, 2825, 2966 |
| StuI | AGGCCT | 2 cut(s) | 1333, 2477 |
| StyI | CCWWGG | 4 cut(s) | 390, 1347, 2146, 3258 |
| TaaI | ACNGT | 9 cut(s) | 244, 875, 1293, 1763, 1806, 2086, 2186, 2605, 3143 |
| TaiI | ACGT | 2 cut(s) | 1217, 1714 |
| TatI | WGTACW | 3 cut(s) | 573, 1272, 1801 |
| TseFI | GTSAC | 5 cut(s) | 920, 1039, 1408, 2158, 3220 |
| Tsp45I | GTSAC | 5 cut(s) | 920, 1039, 1408, 2158, 3220 |
| TspDTI | ATGAA | 8 cut(s) | 9, 312, 635, 822, 1413, 2321, 2347, 2853 |
| TspGWI | ACGGA | 4 cut(s) | 369, 2485, 3117, 3183 |
| TspMI | CCCGGG | 1 cut(s) | 1443 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3089 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2174 |
| Vha464I | CTTAAG | 2 cut(s) | 1871, 2051 |
| VneI | GTGCAC | 3 cut(s) | 2779, 2936, 3247 |
| VpaK11BI | GGWCC | 4 cut(s) | 911, 1946, 2923, 3266 |
| VspI | ATTAAT | 1 cut(s) | 2058 |
| XapI | RAATTY | 4 cut(s) | 1517, 1959, 2636, 2667 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 463, 1246, 2203 |
| XmaI | CCCGGG | 1 cut(s) | 1443 |
| XmiI | GTMKAC | 1 cut(s) | 3165 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2720 |
| XspI | CTAG | 3 cut(s) | 1560, 2825, 2966 |