Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

61265882 .. 61271042

Gene Structure 5161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGTCCGGACGCGGCAGCCGAGGCCGGCATTATTCCGGCGGTCGCTCTAATCCCTCGCACGCCAGAGGCGGCAGAGGAAGTTCAGGCGCCGCAGCTCCGGCGCCGACTCAAACTCGAGCTTATTCTCCACCGGCGGCCTCGTCAAGCTCGGCTCCGGTGGCTTCCCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGGAGACGACGACGACGACGGCCGTGGCTGCTGTGCCGCCGGCGTCGTCCAAGGCGGTGAGGTTTCCGCAGAGGCCGGGGTTCGGGACGGTCGGTAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACCTCCATCATTACGATGTTACGATTACCCCAGAAGTAGCATCAAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTTCGTTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTGTCGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCAACTTCTTCGAAAAGAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGCGTGTTGAAACGCCACAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAATACTGGAGGGGTTTTTACCAAAGTTTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCAGCAAGATCTTTTTTTGAACCCATTTTGGTGACCGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCCAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAATGAAGAAGTTAAGAGAACTTACACAATCAATGGACTGTCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGAAAACACATCAGTTATGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCCATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCTGGACAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATTACACAGATGATTAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAAAGAGGAAATGGCATTGGTTAAAGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTTATCCCCAGATGGGTCAGTGGAACATGACAAACAAGAAAATGGTCAATGGAGGTAGATTGCAAGTCTGGGCATTTGTCAATTTCTCCAGAGTATCCCAAGATATTACTTTTGAGTTTCTTGGGGCTTTGGTTGATGTGTGCAACAGTAAGGGGATGGAGTTTTTTCCCGAACCCCTGCTTCCAGTACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCTGCTCAGCAAGGACGACAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAGTAAAAAGGTGGAATACGCAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGTGGACGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCGCTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCCGCCGGGGATGACAGTAGCCCATCAATTGCAGCAGTCGTTGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCATTGCCTTCTACAGACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGTTACATGAGGTGGATGCTATAAGAAGGGCCTGTGCCTCTTTGGAGGAAGGATATATGCCAACAGTAACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCGGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTATTATGCTCATCTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGATTCATCCGATGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTCTCCGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

948

Amino Acids

106.6

Weight (kDa)

9.51

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	98 - 240	4.1e-37	N-terminal domain of argonaute
ArgoL1	PF08699	251 - 299	2.6e-18	Argonaute linker 1 domain
PAZ	PF02170	324 - 435	6.2e-25	PAZ domain
ArgoL2	PF16488	445 - 495	4.1e-10	Argonaute linker 2 domain
ArgoMid	PF16487	506 - 583	1.9e-09	Mid domain of argonaute
Piwi	PF02171	595 - 913	9.3e-108	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1403, 1983
AarI	CACCTGC	1 cut(s)	2701
Acc36I	ACCTGC	2 cut(s)	319, 2701
AccB1I	GGYRCC	2 cut(s)	86, 100
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	2 cut(s)	5, 2803
AclI	AACGTT	1 cut(s)	2390
AclWI	GGATC	2 cut(s)	388, 603
AcoI	YGGCCR	3 cut(s)	216, 1187, 2105
AcsI	RAATTY	4 cut(s)	297, 456, 1412, 2522
AcuI	CTGAAG	1 cut(s)	1760
AcyI	GRCGYC	3 cut(s)	87, 101, 239
AfaI	GTAC	7 cut(s)	743, 1160, 1698, 1731, 2403, 2488, 2657
AfiI	CCNNNNNNNGG	8 cut(s)	278, 328, 403, 548, 1002, 1523, 2054, 2431
AflII	CTTAAG	1 cut(s)	1928
AgsI	TTSAA	8 cut(s)	302, 576, 680, 899, 1000, 1199, 1215, 2480
AjnI	CCWGG	4 cut(s)	321, 1711, 2482, 2556
AloI	GAACNNNNNNTCC	2 cut(s)	2554, 2586
Alw21I	GWGCWC	3 cut(s)	2669, 2728, 2785
Alw26I	GTCTC	5 cut(s)	194, 336, 431, 1377, 1869
Alw44I	GTGCAC	2 cut(s)	2665, 2781
AlwI	GGATC	2 cut(s)	388, 603
AlwNI	CAGNNNCTG	1 cut(s)	2489
Ama87I	CYCGRG	3 cut(s)	114, 1329, 1455
Aor13HI	TCCGGA	2 cut(s)	5, 2803
ApaLI	GTGCAC	2 cut(s)	2665, 2781
ApeKI	GCWGC	8 cut(s)	15, 92, 224, 557, 560, 563, 2081, 2143
ApoI	RAATTY	4 cut(s)	297, 456, 1412, 2522
AspLEI	GCGC	3 cut(s)	89, 103, 2143
AspS9I	GGNCC	4 cut(s)	497, 782, 1035, 2349
AsuC2I	CCSGG	3 cut(s)	273, 2056, 2432
AsuHPI	GGTGA	7 cut(s)	265, 418, 812, 922, 997, 2141, 2756
AsuII	TTCGAA	1 cut(s)	584
AvaI	CYCGRG	3 cut(s)	114, 1329, 1455
AvaII	GGWCC	1 cut(s)	1035
BaeGI	GKGCMC	2 cut(s)	2669, 2785
BaeI	ACNNNNGTAYC	2 cut(s)	2478, 2511
BalI	TGGCCA	2 cut(s)	1189, 2107
BanI	GGYRCC	2 cut(s)	86, 100
BanII	GRGCYC	2 cut(s)	1881, 2800
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	3 cut(s)	2669, 2728, 2785
BbvI	GCAGC	8 cut(s)	27, 104, 211, 544, 550, 572, 2093, 2155
BceAI	ACGGC	5 cut(s)	203, 231, 2248, 2553, 2744
BcgI	CGANNNNNNTGC	8 cut(s)	905, 939, 1130, 1164, 2118, 2152, 2402, 2436
BciT130I	CCWGG	4 cut(s)	323, 1713, 2484, 2558
BciVI	GTATCC	1 cut(s)	1615
BclI	TGATCA	2 cut(s)	1801, 2437
BcnI	CCSGG	3 cut(s)	273, 2056, 2432
BcoDI	GTCTC	5 cut(s)	194, 336, 431, 1377, 1869
BfaI	CTAG	2 cut(s)	797, 854
BfmI	CTRYAG	8 cut(s)	558, 564, 1083, 2122, 2242, 2281, 2517, 2682
BfoI	RGCGCY	2 cut(s)	90, 104
BfrI	CTTAAG	1 cut(s)	1928
BfuAI	ACCTGC	2 cut(s)	319, 2701
BfuI	GTATCC	1 cut(s)	1615
BglII	AGATCT	2 cut(s)	887, 2170
BlpI	GCTNAGC	1 cut(s)	1758
Bme1390I	CCNGG	7 cut(s)	273, 323, 1713, 2056, 2432, 2484, 2558
Bme18I	GGWCC	1 cut(s)	1035
BmeT110I	CYCGRG	3 cut(s)	114, 1329, 1455
BmgT120I	GGNCC	4 cut(s)	497, 782, 1035, 2349
BmiI	GGNNCC	3 cut(s)	88, 102, 153
BmrFI	CCNGG	7 cut(s)	273, 323, 1713, 2056, 2432, 2484, 2558
BmsI	GCATC	6 cut(s)	392, 1963, 1980, 2155, 2326, 2422
BoxI	GACNNNNGTC	1 cut(s)	1494
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	2 cut(s)	1229, 1261
BpmI	CTGGAG	3 cut(s)	218, 838, 1582
Bpu1102I	GCTNAGC	1 cut(s)	1758
Bpu14I	TTCGAA	1 cut(s)	584
BpuMI	CCSGG	3 cut(s)	273, 2056, 2432
BsaAI	YACGTR	1 cut(s)	2655
BsaHI	GRCGYC	3 cut(s)	87, 101, 239
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	8 cut(s)	19, 219, 246, 272, 516, 1328, 2055, 2557
BsaWI	WCCGGW	3 cut(s)	5, 154, 2803
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 2022, 2052, 2775, 2805
Bsc4I	CCNNNNNNNGG	8 cut(s)	278, 328, 403, 548, 1002, 1523, 2054, 2431
Bse118I	RCCGGY	3 cut(s)	24, 130, 235
Bse1I	ACTGG	7 cut(s)	201, 423, 821, 1037, 1694, 2305, 2776
Bse3DI	GCAATG	4 cut(s)	500, 1213, 1472, 2232
BseAI	TCCGGA	2 cut(s)	5, 2803
BseBI	CCWGG	4 cut(s)	323, 1713, 2484, 2558
BseDI	CCNNGG	8 cut(s)	19, 219, 246, 272, 516, 1328, 2055, 2557
BseGI	GGATG	6 cut(s)	1671, 1708, 2044, 2065, 2341, 2750
BseLI	CCNNNNNNNGG	8 cut(s)	278, 328, 403, 548, 1002, 1523, 2054, 2431
BseMI	GCAATG	4 cut(s)	500, 1213, 1472, 2232
BseMII	CTCAG	6 cut(s)	158, 765, 1747, 1772, 1880, 2181
BseNI	ACTGG	7 cut(s)	201, 423, 821, 1037, 1694, 2305, 2776
BseSI	GKGCMC	2 cut(s)	2669, 2785
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	8 cut(s)	27, 104, 211, 544, 550, 572, 2093, 2155
BseYI	CCCAGC	2 cut(s)	849, 954
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	5 cut(s)	43, 219, 288, 2008, 2675
BshNI	GGYRCC	2 cut(s)	86, 100
BsiEI	CGRYCG	5 cut(s)	43, 219, 288, 2008, 2675
BsiHKAI	GWGCWC	3 cut(s)	2669, 2728, 2785
BsiHKCI	CYCGRG	3 cut(s)	114, 1329, 1455
BsiWI	CGTACG	1 cut(s)	2655
BslFI	GGGAC	4 cut(s)	295, 1043, 1110, 1346
BslI	CCNNNNNNNGG	8 cut(s)	278, 328, 403, 548, 1002, 1523, 2054, 2431
BsmAI	GTCTC	5 cut(s)	194, 336, 431, 1377, 1869
BsmBI	CGTCTC	3 cut(s)	194, 431, 1377
BsmFI	GGGAC	4 cut(s)	295, 1043, 1110, 1346
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	3 cut(s)	114, 1329, 1455
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	5 cut(s)	1881, 2669, 2728, 2785, 2800
Bsp13I	TCCGGA	2 cut(s)	5, 2803
Bsp1720I	GCTNAGC	1 cut(s)	1758
BspCNI	CTCAG	6 cut(s)	159, 766, 1746, 1771, 1879, 2182
BspEI	TCCGGA	2 cut(s)	5, 2803
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	88, 102, 153
BspMAI	CTGCAG	3 cut(s)	562, 568, 1087
BspMI	ACCTGC	2 cut(s)	319, 2701
BspPI	GGATC	2 cut(s)	388, 603
BspQI	GCTCTTC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	584
BspT107I	GGYRCC	2 cut(s)	86, 100
BspTI	CTTAAG	1 cut(s)	1928
BspTNI	GGTCTC	1 cut(s)	336
BsrDI	GCAATG	4 cut(s)	500, 1213, 1472, 2232
BsrFI	RCCGGY	3 cut(s)	24, 130, 235
BsrI	ACTGG	7 cut(s)	201, 423, 821, 1037, 1694, 2305, 2776
BssAI	RCCGGY	3 cut(s)	24, 130, 235
BssECI	CCNNGG	8 cut(s)	19, 219, 246, 272, 516, 1328, 2055, 2557
BssNI	GRCGYC	3 cut(s)	87, 101, 239
BssT1I	CCWWGG	2 cut(s)	246, 516
Bst2UI	CCWGG	4 cut(s)	323, 1713, 2484, 2558
Bst6I	CTCTTC	1 cut(s)	473
BstACI	GRCGYC	3 cut(s)	87, 101, 239
BstAFI	CTTAAG	1 cut(s)	1928
BstAPI	GCANNNNNTGC	1 cut(s)	2090
BstBAI	YACGTR	1 cut(s)	2655
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	7 cut(s)	26, 60, 237, 671, 1191, 1204, 2012
BstDEI	CTNAG	8 cut(s)	167, 719, 774, 1733, 1758, 1866, 1873, 2190
BstDSI	CCRYGG	1 cut(s)	219
BstEII	GGTNACC	1 cut(s)	910
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	6 cut(s)	1671, 1708, 2044, 2065, 2341, 2750
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	90, 104
BstHHI	GCGC	3 cut(s)	89, 103, 2143
BstMAI	GTCTC	5 cut(s)	194, 336, 431, 1377, 1869
BstMCI	CGRYCG	5 cut(s)	43, 219, 288, 2008, 2675
BstNI	CCWGG	4 cut(s)	323, 1713, 2484, 2558
BstPAI	GACNNNNGTC	1 cut(s)	1494
BstPI	GGTNACC	1 cut(s)	910
BstSCI	CCNGG	7 cut(s)	271, 321, 1711, 2054, 2430, 2482, 2556
BstSFI	CTRYAG	8 cut(s)	558, 564, 1083, 2122, 2242, 2281, 2517, 2682
BstSLI	GKGCMC	2 cut(s)	2669, 2785
BstSNI	TACGTA	1 cut(s)	2655
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	8 cut(s)	27, 104, 211, 544, 550, 572, 2093, 2155
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	3 cut(s)	393, 887, 2170
BstXI	CCANNNNNNTGG	1 cut(s)	1493
BstYI	RGATCY	3 cut(s)	393, 887, 2170
BstZI	CGGCCG	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	1615
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	6 cut(s)	1671, 1708, 2044, 2065, 2341, 2750
BtsI	GCAGTG	1 cut(s)	2610
BtsIMutI	CAGTG	9 cut(s)	194, 744, 942, 1498, 1535, 1874, 1959, 2302, 2610
BveI	ACCTGC	2 cut(s)	319, 2701
Cac8I	GCNNGC	7 cut(s)	26, 60, 237, 671, 1191, 1204, 2012
CaiI	CAGNNNCTG	1 cut(s)	2489
CfoI	GCGC	3 cut(s)	89, 103, 2143
Cfr10I	RCCGGY	3 cut(s)	24, 130, 235
Cfr13I	GGNCC	4 cut(s)	497, 782, 1035, 2349
CseI	GACGC	3 cut(s)	18, 228, 448
CsiI	ACCWGGT	1 cut(s)	2482
Csp6I	GTAC	7 cut(s)	742, 1159, 1697, 1730, 2402, 2487, 2656
CviAII	CATG	7 cut(s)	475, 1487, 1537, 2207, 2327, 2546, 2585
CviQI	GTAC	7 cut(s)	742, 1159, 1697, 1730, 2402, 2487, 2656
DdeI	CTNAG	8 cut(s)	167, 719, 774, 1733, 1758, 1866, 1873, 2190
DinI	GGCGCC	2 cut(s)	88, 102
DraI	TTTAAA	1 cut(s)	1968
EaeI	YGGCCR	3 cut(s)	216, 1187, 2105
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EclXI	CGGCCG	1 cut(s)	216
Eco105I	TACGTA	1 cut(s)	2655
Eco130I	CCWWGG	2 cut(s)	246, 516
Eco24I	GRGCYC	2 cut(s)	1881, 2800
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	1035
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	1760
Eco88I	CYCGRG	3 cut(s)	114, 1329, 1455
Eco91I	GGTNACC	1 cut(s)	910
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	2349
EcoO65I	GGTNACC	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	4 cut(s)	321, 1711, 2482, 2556
EcoT14I	CCWWGG	2 cut(s)	246, 516
EcoT38I	GRGCYC	2 cut(s)	1881, 2800
EgeI	GGCGCC	2 cut(s)	88, 102
EheI	GGCGCC	2 cut(s)	88, 102
ErhI	CCWWGG	2 cut(s)	246, 516
Esp3I	CGTCTC	3 cut(s)	194, 431, 1377
FaeI	CATG	7 cut(s)	478, 1490, 1540, 2210, 2330, 2549, 2588
FalI	AAGNNNNNCTT	6 cut(s)	980, 1012, 1096, 1128, 1383, 1415
FaqI	GGGAC	4 cut(s)	295, 1043, 1110, 1346
FatI	CATG	7 cut(s)	474, 1486, 1536, 2206, 2326, 2545, 2584
FauI	CCCGC	1 cut(s)	996
FbaI	TGATCA	2 cut(s)	1801, 2437
FokI	GGATG	6 cut(s)	1678, 1695, 2031, 2072, 2348, 2737
FriOI	GRGCYC	2 cut(s)	1881, 2800
FspBI	CTAG	2 cut(s)	797, 854
GlaI	GCGC	3 cut(s)	88, 102, 2142
GsaI	CCCAGC	2 cut(s)	853, 958
GsuI	CTGGAG	3 cut(s)	218, 838, 1582
HaeII	RGCGCY	2 cut(s)	90, 104
HgaI	GACGC	3 cut(s)	18, 228, 448
HhaI	GCGC	3 cut(s)	89, 103, 2143
Hin1I	GRCGYC	3 cut(s)	87, 101, 239
Hin1II	CATG	7 cut(s)	478, 1490, 1540, 2210, 2330, 2549, 2588
Hin6I	GCGC	3 cut(s)	87, 101, 2141
HinP1I	GCGC	3 cut(s)	87, 101, 2141
HincII	GTYRAC	3 cut(s)	192, 1322, 2497
HindII	GTYRAC	3 cut(s)	192, 1322, 2497
HinfI	GANTC	7 cut(s)	106, 1211, 1394, 1811, 2553, 2607, 2747
HphI	GGTGA	7 cut(s)	265, 418, 812, 922, 997, 2141, 2756
Hpy188I	TCNGA	7 cut(s)	308, 436, 736, 2191, 2457, 2755, 2795
Hpy99I	CGWCG	6 cut(s)	208, 211, 214, 217, 244, 2269
HpyAV	CCTTC	8 cut(s)	797, 1936, 2188, 2248, 2294, 2340, 2363, 2810
HpyCH4IV	ACGT	3 cut(s)	1324, 2390, 2654
HpyF3I	CTNAG	8 cut(s)	167, 719, 774, 1733, 1758, 1866, 1873, 2190
HpySE526I	ACGT	3 cut(s)	1324, 2390, 2654
Hsp92I	GRCGYC	3 cut(s)	87, 101, 239
Hsp92II	CATG	7 cut(s)	478, 1490, 1540, 2210, 2330, 2549, 2588
HspAI	GCGC	3 cut(s)	87, 101, 2141
KasI	GGCGCC	2 cut(s)	86, 100
Kpn2I	TCCGGA	2 cut(s)	5, 2803
KroI	GCCGGC	2 cut(s)	24, 235
KroNI	GCCGGC	2 cut(s)	26, 237
Ksp22I	TGATCA	2 cut(s)	1801, 2437
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	5 cut(s)	100, 157, 181, 1237, 2030
Lsp1109I	GCAGC	8 cut(s)	27, 104, 211, 544, 550, 572, 2093, 2155
LweI	GCATC	6 cut(s)	392, 1963, 1980, 2155, 2326, 2422
MabI	ACCWGGT	1 cut(s)	2482
MaeI	CTAG	2 cut(s)	797, 854
MaeII	ACGT	3 cut(s)	1324, 2390, 2654
MaeIII	GTNAC	8 cut(s)	361, 910, 1294, 1999, 2038, 2113, 2322, 2386
MboII	GAAGA	8 cut(s)	490, 564, 573, 1000, 1058, 1130, 1837, 1999
MfeI	CAATTG	3 cut(s)	1248, 2076, 2130
MflI	RGATCY	3 cut(s)	393, 887, 2170
MhlI	GDGCHC	5 cut(s)	1881, 2669, 2728, 2785, 2800
MlsI	TGGCCA	2 cut(s)	1189, 2107
MluNI	TGGCCA	2 cut(s)	1189, 2107
Mly113I	GGCGCC	2 cut(s)	87, 101
MlyI	GAGTC	1 cut(s)	100
Mox20I	TGGCCA	2 cut(s)	1189, 2107
MreI	CGCCGGCG	1 cut(s)	235
MroI	TCCGGA	2 cut(s)	5, 2803
MroNI	GCCGGC	2 cut(s)	24, 235
MscI	TGGCCA	2 cut(s)	1189, 2107
MslI	CAYNNNNRTG	6 cut(s)	357, 908, 1491, 2151, 2154, 2583
Msp20I	TGGCCA	2 cut(s)	1189, 2107
MspA1I	CMGCKG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	1928
MspR9I	CCNGG	7 cut(s)	273, 323, 1713, 2056, 2432, 2484, 2558
MunI	CAATTG	3 cut(s)	1248, 2076, 2130
MvaI	CCWGG	4 cut(s)	323, 1713, 2484, 2558
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	2 cut(s)	26, 237
NarI	GGCGCC	2 cut(s)	87, 101
NciI	CCSGG	3 cut(s)	273, 2056, 2432
NgoMIV	GCCGGC	2 cut(s)	24, 235
NlaIII	CATG	7 cut(s)	478, 1490, 1540, 2210, 2330, 2549, 2588
NlaIV	GGNNCC	3 cut(s)	88, 102, 153
NmeAIII	GCCGAG	2 cut(s)	44, 128
NmuCI	GTSAC	4 cut(s)	910, 1294, 1999, 2113
NspV	TTCGAA	1 cut(s)	584
PaeR7I	CTCGAG	2 cut(s)	114, 1455
PaqCI	CACCTGC	1 cut(s)	2701
PciSI	GCTCTTC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 209
PdiI	GCCGGC	2 cut(s)	26, 237
PfeI	GAWTC	6 cut(s)	1211, 1394, 1811, 2553, 2607, 2747
Pfl23II	CGTACG	1 cut(s)	2655
PflMI	CCANNNNNTGG	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	1711
Ple19I	CGATCG	2 cut(s)	2008, 2675
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	2 cut(s)	90, 104
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	2655
PshAI	GACNNNNGTC	1 cut(s)	1494
PsiI	TTATAA	2 cut(s)	1403, 1983
Psp1406I	AACGTT	1 cut(s)	2390
Psp6I	CCWGG	4 cut(s)	321, 1711, 2482, 2556
PspEI	GGTNACC	1 cut(s)	910
PspFI	CCCAGC	2 cut(s)	849, 954
PspGI	CCWGG	4 cut(s)	321, 1711, 2482, 2556
PspLI	CGTACG	1 cut(s)	2655
PspN4I	GGNNCC	3 cut(s)	88, 102, 153
PspPI	GGNCC	4 cut(s)	497, 782, 1035, 2349
PspXI	VCTCGAGB	2 cut(s)	114, 1455
PstI	CTGCAG	3 cut(s)	562, 568, 1087
PstNI	CAGNNNCTG	1 cut(s)	2489
PsuI	RGATCY	3 cut(s)	393, 887, 2170
PvuI	CGATCG	2 cut(s)	2008, 2675
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	7 cut(s)	743, 1160, 1698, 1731, 2403, 2488, 2657
RsaNI	GTAC	7 cut(s)	742, 1159, 1697, 1730, 2402, 2487, 2656
RseI	CAYNNNNRTG	6 cut(s)	357, 908, 1491, 2151, 2154, 2583
SapI	GCTCTTC	1 cut(s)	473
Sau96I	GGNCC	4 cut(s)	497, 782, 1035, 2349
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	7 cut(s)	273, 323, 1713, 2056, 2432, 2484, 2558
SduI	GDGCHC	5 cut(s)	1881, 2669, 2728, 2785, 2800
SexAI	ACCWGGT	1 cut(s)	2482
SfaNI	GCATC	6 cut(s)	392, 1963, 1980, 2155, 2326, 2422
SfcI	CTRYAG	8 cut(s)	558, 564, 1083, 2122, 2242, 2281, 2517, 2682
SfoI	GGCGCC	2 cut(s)	88, 102
Sfr274I	CTCGAG	2 cut(s)	114, 1455
SfuI	TTCGAA	1 cut(s)	584
SgrAI	CRCCGGYG	2 cut(s)	130, 235
SinI	GGWCC	1 cut(s)	1035
SlaI	CTCGAG	2 cut(s)	114, 1455
SmiMI	CAYNNNNRTG	6 cut(s)	357, 908, 1491, 2151, 2154, 2583
SmlI	CTYRAG	3 cut(s)	114, 1455, 1928
SmoI	CTYRAG	3 cut(s)	114, 1455, 1928
SnaBI	TACGTA	1 cut(s)	2655
SspDI	GGCGCC	2 cut(s)	86, 100
SspI	AATATT	5 cut(s)	871, 1145, 1348, 1910, 2476
SspMI	CTAG	2 cut(s)	797, 854
StyD4I	CCNGG	7 cut(s)	271, 321, 1711, 2054, 2430, 2482, 2556
StyI	CCWWGG	2 cut(s)	246, 516
TaiI	ACGT	3 cut(s)	1327, 2393, 2657
TaqI	TCGA	6 cut(s)	115, 584, 598, 1456, 2267, 2722
TaqII	GACCGA	2 cut(s)	929, 2018
TatI	WGTACW	3 cut(s)	741, 1158, 1696
TauI	GCSGC	6 cut(s)	15, 72, 92, 137, 235, 2054
TfiI	GAWTC	6 cut(s)	1211, 1394, 1811, 2553, 2607, 2747
TscAI	CASTG	9 cut(s)	201, 751, 949, 1498, 1535, 1874, 1966, 2302, 2617
TseFI	GTSAC	4 cut(s)	910, 1294, 1999, 2113
TseI	GCWGC	8 cut(s)	15, 92, 224, 557, 560, 563, 2081, 2143
Tsp45I	GTSAC	4 cut(s)	910, 1294, 1999, 2113
TspDTI	ATGAA	8 cut(s)	425, 491, 1059, 1137, 1803, 2172, 2195, 2739
TspGWI	ACGGA	1 cut(s)	2114
TspRI	CASTG	9 cut(s)	201, 751, 949, 1498, 1535, 1874, 1966, 2302, 2617
Van91I	CCANNNNNTGG	1 cut(s)	548
Vha464I	CTTAAG	1 cut(s)	1928
VneI	GTGCAC	2 cut(s)	2665, 2781
VpaK11BI	GGWCC	1 cut(s)	1035
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	4 cut(s)	297, 456, 1412, 2522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XhoI	CTCGAG	2 cut(s)	114, 1455
XspI	CTAG	2 cut(s)	797, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.