Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59482821 .. 59486245

Gene Structure 3425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCCGGCGCTCGCTTGACTCAGACTCCTGCTTATTCTCCACCAGCGGCCTTGTCAAGTTCGGCTCCTCCGGTGGCTTCGCTGAGTAGGGAGATGGAGCAGAAGTTGACACTCGAGACGACGACGACCGTGGCTGTTGTGCCGCCGGAGTCGTCAATTCCGAAGAGGCCGGGGTTCGGGACGGTCGGTAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACCTCCATCATTACGGGAGAATTCTTCGATACATTGGTGTTTGCCATACCCTCATTTTGTTAAATATTTTGGACCATTGGATTAGTAATATATCCAATAGTTCAAAATATTTAACAAATTGGTTGCAGACAGAGACCTCCATCATTACGAAGGAGGTGATGAACCAACAGGTTCGTTTGTATTCCGAGACGCATTTAGGGAAGATAATTCCTGCTTATGATGGCGTGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCCAGGAGTTTGTTGTCAAACTACTTCCAAATGATGGTCGTGCTGCAGGGTCTTCAACTTCTTCGAAAAGGTTATTGCTCATTGCTCGAGATCGAGAATTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCGCAGCCAGCATGTTGAAACACCTCAAGAGGCAATACTGTTAAGAACTTTGAACACAAGAAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

243

Amino Acids

27.12

Weight (kDa)

9.83

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	64 - 233	9.5e-22	N-terminal domain of argonaute

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	539
AciI	CCGC	2 cut(s)	47, 143
AcsI	RAATTY	3 cut(s)	195, 261, 602
AfiI	CCNNNNNNNGG	3 cut(s)	176, 226, 539
AgsI	TTSAA	5 cut(s)	200, 345, 561, 680, 715
AjnI	CCWGG	2 cut(s)	219, 507
Alw26I	GTCTC	4 cut(s)	110, 234, 368, 422
Ama87I	CYCGRG	2 cut(s)	113, 591
AoxI	GGCC	3 cut(s)	48, 167, 488
ApeKI	GCWGC	2 cut(s)	548, 666
ApoI	RAATTY	3 cut(s)	195, 261, 602
AspLEI	GCGC	2 cut(s)	11, 666
AspS9I	GGNCC	2 cut(s)	313, 488
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	409
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	113, 591
AvaII	GGWCC	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	262, 295
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	535, 678
BccI	CCATC	5 cut(s)	88, 255, 389, 455, 533
BciT130I	CCWGG	2 cut(s)	221, 509
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	4 cut(s)	110, 234, 368, 422
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	48, 143, 549, 667
BlsI	GCNGC	4 cut(s)	49, 144, 550, 668
Bme1390I	CCNGG	3 cut(s)	171, 221, 509
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	2 cut(s)	113, 591
BmgT120I	GGNCC	2 cut(s)	313, 488
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	3 cut(s)	171, 221, 509
BpiI	GAAGAC	1 cut(s)	549
Bpu14I	TTCGAA	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	171
BsaI	GGTCTC	2 cut(s)	234, 368
BsaJI	CCNNGG	3 cut(s)	129, 170, 507
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 89, 119
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 226, 539
Bse3DI	GCAATG	2 cut(s)	491, 585
BseBI	CCWGG	2 cut(s)	221, 509
BseDI	CCNNGG	3 cut(s)	129, 170, 507
BseLI	CCNNNNNNNGG	3 cut(s)	176, 226, 539
BseMI	GCAATG	2 cut(s)	491, 585
BseMII	CTCAG	2 cut(s)	35, 74
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	535, 678
BsgI	GTGCAG	1 cut(s)	245
Bsh1285I	CGRYCG	2 cut(s)	129, 186
BshFI	GGCC	3 cut(s)	50, 169, 490
BsiEI	CGRYCG	2 cut(s)	129, 186
BsiHKCI	CYCGRG	2 cut(s)	113, 591
BsiSI	CCGG	4 cut(s)	6, 71, 146, 170
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	176, 226, 539
BsmAI	GTCTC	4 cut(s)	110, 234, 368, 422
BsmBI	CGTCTC	2 cut(s)	110, 422
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	50, 169, 490
Bso31I	GGTCTC	2 cut(s)	234, 368
BsoBI	CYCGRG	2 cut(s)	113, 591
Bsp119I	TTCGAA	1 cut(s)	569
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	2 cut(s)	47, 143
BspANI	GGCC	3 cut(s)	50, 169, 490
BspCNI	CTCAG	2 cut(s)	34, 75
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	569
BspTNI	GGTCTC	2 cut(s)	234, 368
BsrDI	GCAATG	2 cut(s)	491, 585
BssECI	CCNNGG	3 cut(s)	129, 170, 507
BssMI	GATC	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	221, 509
Bst4CI	ACNGT	4 cut(s)	130, 184, 657, 702
Bst6I	CTCTTC	2 cut(s)	158, 464
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	13, 671
BstDEI	CTNAG	2 cut(s)	21, 83
BstDSI	CCRYGG	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 666
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	4 cut(s)	110, 234, 368, 422
BstMBI	GATC	1 cut(s)	595
BstMCI	CGRYCG	2 cut(s)	129, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 670
BstNI	CCWGG	2 cut(s)	221, 509
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	3 cut(s)	169, 219, 507
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	535, 678
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	3 cut(s)	50, 169, 490
BtgI	CCRYGG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	13, 671
CfoI	GCGC	2 cut(s)	11, 666
Cfr13I	GGNCC	2 cut(s)	313, 488
CseI	GACGC	1 cut(s)	439
CviAII	CATG	1 cut(s)	674
DdeI	CTNAG	2 cut(s)	21, 83
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	158, 464
EarI	CTCTTC	2 cut(s)	158, 464
Eco31I	GGTCTC	2 cut(s)	234, 368
Eco47I	GGWCC	1 cut(s)	313
Eco88I	CYCGRG	2 cut(s)	113, 591
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	219, 507
Esp3I	CGTCTC	2 cut(s)	110, 422
FaeI	CATG	1 cut(s)	677
FaiI	YATR	5 cut(s)	288, 332, 459, 480, 675
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	48, 143, 549, 667
Fsp4HI	GCNGC	4 cut(s)	48, 143, 549, 667
FspI	TGCGCA	1 cut(s)	665
GlaI	GCGC	2 cut(s)	10, 665
GluI	GCNGC	4 cut(s)	48, 143, 549, 667
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	50, 169, 490
HapII	CCGG	4 cut(s)	6, 71, 146, 170
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	2 cut(s)	11, 666
Hin1II	CATG	1 cut(s)	677
Hin6I	GCGC	2 cut(s)	9, 664
HinP1I	GCGC	2 cut(s)	9, 664
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	19, 25, 149
HpaII	CCGG	4 cut(s)	6, 71, 146, 170
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	4 cut(s)	24, 162, 206, 427
Hpy188III	TCNNGA	5 cut(s)	115, 178, 593, 599, 689
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	4 cut(s)	130, 184, 657, 702
HpyCH4V	TGCA	4 cut(s)	226, 233, 367, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 670
HpyF3I	CTNAG	2 cut(s)	21, 83
Hsp92II	CATG	1 cut(s)	677
HspAI	GCGC	2 cut(s)	9, 664
Kzo9I	GATC	1 cut(s)	595
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	70, 97
Lsp1109I	GCAGC	2 cut(s)	535, 678
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	6 cut(s)	175, 257, 454, 481, 549, 558
MluCI	AATT	6 cut(s)	156, 195, 261, 358, 447, 602
MlyI	GAGTC	3 cut(s)	13, 19, 158
MseI	TTAA	4 cut(s)	302, 353, 606, 704
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	4 cut(s)	6, 71, 146, 170
MspR9I	CCNGG	3 cut(s)	171, 221, 509
MvaI	CCWGG	2 cut(s)	221, 509
MwoI	GCNNNNNNNGC	2 cut(s)	471, 670
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	1 cut(s)	677
NlaIV	GGNNCC	1 cut(s)	66
NsbI	TGCGCA	1 cut(s)	665
NspI	RCATGY	1 cut(s)	677
NspV	TTCGAA	1 cut(s)	569
PaeR7I	CTCGAG	2 cut(s)	113, 591
PciSI	GCTCTTC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	49, 144, 550, 668
PleI	GAGTC	3 cut(s)	13, 19, 157
PpsI	GAGTC	3 cut(s)	13, 19, 157
Psp6I	CCWGG	2 cut(s)	219, 507
PspGI	CCWGG	2 cut(s)	219, 507
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	313, 488
PstI	CTGCAG	1 cut(s)	553
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	4 cut(s)	302, 353, 606, 704
SatI	GCNGC	4 cut(s)	48, 143, 549, 667
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	2 cut(s)	313, 488
SchI	GAGTC	3 cut(s)	13, 19, 158
ScrFI	CCNGG	3 cut(s)	171, 221, 509
SetI	ASST	9 cut(s)	231, 246, 380, 399, 414, 578, 612, 642, 688
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	2 cut(s)	113, 591
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	1 cut(s)	313
SlaI	CTCGAG	2 cut(s)	113, 591
SmlI	CTYRAG	3 cut(s)	113, 591, 687
SmoI	CTYRAG	3 cut(s)	113, 591, 687
Sse9I	AATT	6 cut(s)	156, 195, 261, 358, 447, 602
SsiI	CCGC	2 cut(s)	47, 143
SspI	AATATT	2 cut(s)	307, 350
StyD4I	CCNGG	3 cut(s)	169, 219, 507
TaaI	ACNGT	4 cut(s)	130, 184, 657, 702
TaqI	TCGA	5 cut(s)	114, 268, 569, 592, 598
TasI	AATT	6 cut(s)	156, 195, 261, 358, 447, 602
TauI	GCSGC	2 cut(s)	50, 145
Tru1I	TTAA	4 cut(s)	302, 353, 606, 704
Tru9I	TTAA	4 cut(s)	302, 353, 606, 704
TseI	GCWGC	2 cut(s)	548, 666
TspDTI	ATGAA	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	3 cut(s)	195, 261, 602
XceI	RCATGY	1 cut(s)	677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XhoI	CTCGAG	2 cut(s)	113, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.