RchiOBHm_Chr5g0056001

Belongs to the argonaute family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
59423720 .. 59425077
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33293

Sequence Viewer

Length: 930 bp
ATGTCAGGGCGCGGTGGCCGAGGCCGGCATTATTCCGGCGCTCGCTCTAATCCATCGCGGGGCGGAGGCGCCGGGACTCAGACTCCTGCTTATTCTCCACCAGCGGCCTCGTCAAGTTCGGCTCCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGGAGACGACGACGGACGTGGCTGTCGTGCCGCCGGCGTCGTCGAAGGCGGTGAGCTTTCCGCAGAGGCCGAATTTCGGGACGGTCGGCAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTACAGGTTGCAGACAGAGACGTTCACCATTACAATGTTACCATAACCCCAGAAGTTGCATCCAAAAAGATCCACAGGGAGGTGATAAACCAACTGGTCTGTTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCCAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCAACTTCTTCGAAAAGAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGTGCAGCCAGCGTGTTGAAACACCTCAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAGTACTGGAGAGGTTTTTACCAGAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGGTATTGTATTGACTATTGACCATGTTTTCTATGTTTTGAGCATTATACCAACTCAGAAGACAAAATGCTCCAACTCTGATCCAAGTTAA

Protein Analysis

309

Amino Acids

33.51

Weight (kDa)

9.57

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 87 - 229 8.2e-37 N-terminal domain of argonaute
ArgoL1 PF08699 240 - 280 9.4e-15 Argonaute linker 1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 1 cut(s) 805
AccII CGCG 2 cut(s) 12, 58
AciI CCGC 7 cut(s) 12, 58, 63, 104, 200, 218, 230
AclWI GGATC 3 cut(s) 355, 570, 914
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 3 cut(s) 241, 264, 423
AcyI GRCGYC 2 cut(s) 69, 206
AfaI GTAC 3 cut(s) 294, 710, 782
AfiI CCNNNNNNNGG 5 cut(s) 59, 245, 295, 370, 515
AgsI TTSAA 3 cut(s) 269, 543, 647
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 288, 483
AluBI AGCT 5 cut(s) 225, 530, 692, 745, 820
AluI AGCT 5 cut(s) 225, 530, 692, 745, 820
Alw26I GTCTC 3 cut(s) 167, 303, 398
AlwI GGATC 3 cut(s) 355, 570, 914
AoxI GGCC 6 cut(s) 16, 22, 105, 236, 464, 749
ApeKI GCWGC 4 cut(s) 524, 527, 530, 633
ApoI RAATTY 3 cut(s) 241, 264, 423
AspLEI GCGC 3 cut(s) 12, 41, 71
AspS9I GGNCC 2 cut(s) 464, 749
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 232, 308, 385, 779
AsuII TTCGAA 1 cut(s) 551
BanI GGYRCC 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 531, 905
BbvI GCAGC 4 cut(s) 511, 517, 539, 645
BccI CCATC 5 cut(s) 61, 145, 431, 509, 706
BciT130I CCWGG 2 cut(s) 290, 485
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 3 cut(s) 167, 303, 398
BfaI CTAG 2 cut(s) 764, 821
BfmI CTRYAG 2 cut(s) 525, 531
BfoI RGCGCY 2 cut(s) 42, 72
BisI GCNGC 6 cut(s) 105, 200, 525, 528, 531, 634
BlsI GCNGC 6 cut(s) 106, 201, 526, 529, 532, 635
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 3 cut(s) 73, 290, 485
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 464, 749
BmiI GGNNCC 2 cut(s) 70, 123
BmrFI CCNGG 3 cut(s) 73, 290, 485
BmsI GCATC 1 cut(s) 359
BpiI GAAGAC 2 cut(s) 531, 905
BpmI CTGGAG 2 cut(s) 191, 805
Bpu14I TTCGAA 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 2 cut(s) 69, 206
BsaJI CCNNGG 2 cut(s) 19, 483
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 245, 295, 370, 515
Bse118I RCCGGY 2 cut(s) 24, 202
Bse1I ACTGG 3 cut(s) 174, 390, 788
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 2 cut(s) 290, 485
BseDI CCNNGG 2 cut(s) 19, 483
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 5 cut(s) 59, 245, 295, 370, 515
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 4 cut(s) 92, 131, 732, 908
BseNI ACTGG 3 cut(s) 174, 390, 788
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 4 cut(s) 511, 517, 539, 645
BseYI CCCAGC 1 cut(s) 816
BsgI GTGCAG 1 cut(s) 652
Bsh1236I CGCG 2 cut(s) 12, 58
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 6 cut(s) 18, 24, 107, 238, 466, 751
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 5 cut(s) 25, 36, 72, 128, 203
BslFI GGGAC 2 cut(s) 88, 262
BslI CCNNNNNNNGG 5 cut(s) 59, 245, 295, 370, 515
BsmAI GTCTC 3 cut(s) 167, 303, 398
BsmBI CGTCTC 3 cut(s) 167, 303, 398
BsmFI GGGAC 2 cut(s) 88, 262
BsnI GGCC 6 cut(s) 18, 24, 107, 238, 466, 751
Bsp119I TTCGAA 1 cut(s) 551
Bsp143I GATC 3 cut(s) 360, 562, 919
BspACI CCGC 7 cut(s) 12, 58, 63, 104, 200, 218, 230
BspANI GGCC 6 cut(s) 18, 24, 107, 238, 466, 751
BspCNI CTCAG 4 cut(s) 91, 132, 733, 907
BspFNI CGCG 2 cut(s) 12, 58
BspLI GGNNCC 2 cut(s) 70, 123
BspMAI CTGCAG 2 cut(s) 529, 535
BspPI GGATC 3 cut(s) 355, 570, 914
BspQI GCTCTTC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 467
BsrFI RCCGGY 2 cut(s) 24, 202
BsrI ACTGG 3 cut(s) 174, 390, 788
BssAI RCCGGY 2 cut(s) 24, 202
BssECI CCNNGG 2 cut(s) 19, 483
BssMI GATC 3 cut(s) 360, 562, 919
BssNI GRCGYC 2 cut(s) 69, 206
Bst2UI CCWGG 2 cut(s) 290, 485
Bst4CI ACNGT 3 cut(s) 253, 624, 715
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 2 cut(s) 69, 206
BstBI TTCGAA 1 cut(s) 551
BstC8I GCNNGC 4 cut(s) 26, 43, 204, 638
BstDEI CTNAG 5 cut(s) 78, 140, 686, 741, 894
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 350
BstFNI CGCG 2 cut(s) 12, 58
BstH2I RGCGCY 2 cut(s) 42, 72
BstHHI GCGC 3 cut(s) 12, 41, 71
BstKTI GATC 3 cut(s) 363, 565, 922
BstMAI GTCTC 3 cut(s) 167, 303, 398
BstMBI GATC 3 cut(s) 360, 562, 919
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 447, 530
BstNI CCWGG 2 cut(s) 290, 485
BstSCI CCNGG 3 cut(s) 71, 288, 483
BstSFI CTRYAG 2 cut(s) 525, 531
BstUI CGCG 2 cut(s) 12, 58
BstV1I GCAGC 4 cut(s) 511, 517, 539, 645
BstV2I GAAGAC 2 cut(s) 531, 905
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 6 cut(s) 18, 24, 107, 238, 466, 751
BtgZI GCGATG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 167, 711
Cac8I GCNNGC 4 cut(s) 26, 43, 204, 638
CfoI GCGC 3 cut(s) 12, 41, 71
Cfr10I RCCGGY 2 cut(s) 24, 202
Cfr13I GGNCC 2 cut(s) 464, 749
CseI GACGC 2 cut(s) 195, 415
Csp6I GTAC 3 cut(s) 293, 709, 781
CviAII CATG 2 cut(s) 442, 863
CviQI GTAC 3 cut(s) 293, 709, 781
DdeI CTNAG 5 cut(s) 78, 140, 686, 741, 894
DinI GGCGCC 1 cut(s) 70
DpnI GATC 3 cut(s) 362, 564, 921
DpnII GATC 3 cut(s) 360, 562, 919
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 288, 483
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
Esp3I CGTCTC 3 cut(s) 167, 303, 398
FaeI CATG 2 cut(s) 445, 866
FaiI YATR 7 cut(s) 335, 435, 443, 456, 864, 873, 887
FaqI GGGAC 2 cut(s) 88, 262
FatI CATG 2 cut(s) 441, 862
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 6 cut(s) 105, 200, 525, 528, 531, 634
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 6 cut(s) 105, 200, 525, 528, 531, 634
FspBI CTAG 2 cut(s) 764, 821
GlaI GCGC 3 cut(s) 11, 40, 70
GluI GCNGC 6 cut(s) 105, 200, 525, 528, 531, 634
GsaI CCCAGC 1 cut(s) 820
GsuI CTGGAG 2 cut(s) 191, 805
HaeII RGCGCY 2 cut(s) 42, 72
HaeIII GGCC 6 cut(s) 18, 24, 107, 238, 466, 751
HapII CCGG 5 cut(s) 25, 36, 72, 128, 203
HgaI GACGC 2 cut(s) 195, 415
HhaI GCGC 3 cut(s) 12, 41, 71
Hin1I GRCGYC 2 cut(s) 69, 206
Hin1II CATG 2 cut(s) 445, 866
Hin6I GCGC 3 cut(s) 10, 39, 69
HinP1I GCGC 3 cut(s) 10, 39, 69
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 3 cut(s) 76, 82, 802
HpaII CCGG 5 cut(s) 25, 36, 72, 128, 203
HphI GGTGA 4 cut(s) 232, 308, 385, 779
Hpy166II GTNNAC 4 cut(s) 165, 316, 711, 806
Hpy188I TCNGA 6 cut(s) 81, 275, 403, 703, 897, 919
Hpy188III TCNNGA 4 cut(s) 247, 566, 656, 674
Hpy8I GTNNAC 4 cut(s) 165, 316, 711, 806
Hpy99I CGWCG 4 cut(s) 181, 184, 211, 214
HpyAV CCTTC 2 cut(s) 208, 764
HpyCH4III ACNGT 3 cut(s) 253, 624, 715
HpyCH4IV ACGT 2 cut(s) 186, 312
HpyCH4V TGCA 5 cut(s) 302, 350, 527, 533, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 530
HpyF3I CTNAG 5 cut(s) 78, 140, 686, 741, 894
HpySE526I ACGT 2 cut(s) 186, 312
Hsp92I GRCGYC 2 cut(s) 69, 206
Hsp92II CATG 2 cut(s) 445, 866
HspAI GCGC 3 cut(s) 10, 39, 69
KasI GGCGCC 1 cut(s) 68
KroI GCCGGC 2 cut(s) 24, 202
KroNI GCCGGC 2 cut(s) 26, 204
Kzo9I GATC 3 cut(s) 360, 562, 919
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 3 cut(s) 127, 154, 914
Lsp1109I GCAGC 4 cut(s) 511, 517, 539, 645
LweI GCATC 1 cut(s) 359
MaeI CTAG 2 cut(s) 764, 821
MaeII ACGT 2 cut(s) 186, 312
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 362, 564, 921
MboI GATC 3 cut(s) 360, 562, 919
MboII GAAGA 4 cut(s) 457, 531, 540, 910
MflI RGATCY 1 cut(s) 360
MluCI AATT 4 cut(s) 241, 264, 423, 500
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 3 cut(s) 70, 76, 811
MreI CGCCGGCG 1 cut(s) 202
MroNI GCCGGC 2 cut(s) 24, 202
MseI TTAA 3 cut(s) 573, 834, 928
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 2 cut(s) 104, 530
MspI CCGG 5 cut(s) 25, 36, 72, 128, 203
MspR9I CCNGG 3 cut(s) 73, 290, 485
MvaI CCWGG 2 cut(s) 290, 485
MvnI CGCG 2 cut(s) 12, 58
MwoI GCNNNNNNNGC 2 cut(s) 447, 530
NaeI GCCGGC 2 cut(s) 26, 204
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 360, 562, 919
NgoMIV GCCGGC 2 cut(s) 24, 202
NlaIII CATG 2 cut(s) 445, 866
NlaIV GGNNCC 2 cut(s) 70, 123
NmeAIII GCCGAG 1 cut(s) 44
NspV TTCGAA 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 2 cut(s) 26, 204
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 6 cut(s) 106, 201, 526, 529, 532, 635
PleI GAGTC 3 cut(s) 70, 76, 810
PluTI GGCGCC 1 cut(s) 72
PpsI GAGTC 3 cut(s) 70, 76, 810
Psp6I CCWGG 2 cut(s) 288, 483
PspFI CCCAGC 1 cut(s) 816
PspGI CCWGG 2 cut(s) 288, 483
PspN4I GGNNCC 2 cut(s) 70, 123
PspPI GGNCC 2 cut(s) 464, 749
PstI CTGCAG 2 cut(s) 529, 535
PsuI RGATCY 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 3 cut(s) 294, 710, 782
RsaNI GTAC 3 cut(s) 293, 709, 781
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 573, 834, 928
SatI GCNGC 6 cut(s) 105, 200, 525, 528, 531, 634
Sau3AI GATC 3 cut(s) 360, 562, 919
Sau96I GGNCC 2 cut(s) 464, 749
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 3 cut(s) 70, 76, 811
ScrFI CCNGG 3 cut(s) 73, 290, 485
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 2 cut(s) 525, 531
SfoI GGCGCC 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 551
SgrAI CRCCGGYG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
Sse9I AATT 4 cut(s) 241, 264, 423, 500
SsiI CCGC 7 cut(s) 12, 58, 63, 104, 200, 218, 230
SspDI GGCGCC 1 cut(s) 68
SspI AATATT 1 cut(s) 838
SspMI CTAG 2 cut(s) 764, 821
StyD4I CCNGG 3 cut(s) 71, 288, 483
TaaI ACNGT 3 cut(s) 253, 624, 715
TaiI ACGT 2 cut(s) 189, 315
TaqI TCGA 3 cut(s) 212, 551, 565
TasI AATT 4 cut(s) 241, 264, 423, 500
TatI WGTACW 2 cut(s) 708, 780
TauI GCSGC 2 cut(s) 107, 202
Tru1I TTAA 3 cut(s) 573, 834, 928
Tru9I TTAA 3 cut(s) 573, 834, 928
TscAI CASTG 2 cut(s) 174, 718
TseI GCWGC 4 cut(s) 524, 527, 530, 633
TspDTI ATGAA 1 cut(s) 458
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 174, 718
Van91I CCANNNNNTGG 1 cut(s) 515
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 3 cut(s) 241, 264, 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 805
XspI CTAG 2 cut(s) 764, 821
ZrmI AGTACT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.