Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Forward (+)

14599426 .. 14606626

Gene Structure 7201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1152200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGTCTCAACGCGGCCGCGGCCGAGGCCGCCATTCCGATCCCTCGTACGGCTCCGACGCCCCGCCGTTTAATCGCGGTGGTAGAGGCGGAGGCCGTGGTCGGGGACGACAGTCCGGCGCTCCACCGTCGTTTCAGTCCGAATCGGGCCCTAGCCGTGGTGGTCCTGGAGTTGTCGCCGCTCCGACGGTGACTCAAGCTCCCTCGCCGGCGCCGATGGCTCAAACACCGGCTCCTCGTGGGCCGGCGCCGGCTCAGGCTTCCTCCAGCTCGGCGCCTCCGCCCGCTGAGGCTCTTCTCATCTCTGAGATGGAGCAGAAACTGACGATGACCGCTCCGCCGCCGTCTTCTTCCAAGGCCATCCGGCATCCGCCGAGGCCGGGCTACGGGAAGGTCGGCGAGAAGGTCCAAGTCAGGGCCAACCATTTCTTAGTGGAGGTTGCGGATAGAGATCTCCATCATTACGATGTGTCGATTACCCCTGAAGTTGCATCGAAAAAGATCAACAGGGATGTAATTAAGCAGCTCGTAAAACTTTACAAGGAATCCCACCTGGGCAAGAGAACCCCAGCTTATGATGGGATGAAAAGTATCTATACAGCAGGCCCCTTACCATTTGCCTCGAAAGAGTTTGTGGTGAGGTTGGCCGAGAAGGAAGGCCGGGAGAGTTCCTCTGCGGCAGCTGGTGCCAAGAGGGACCGAGATTTCAAGGTTACTCTTAAATTGGCTAGCAAACCGGACCTTTATCAACTCCAGCAGTTCCTACGAAGCCAGCAGCATGAGTCACCTCAAGACGCAATTCAAGTTCTGGATGTTGCTCTTAGGGCTACACCTTCAGAAAAATACACTGTTGCTGGGAGGTCTTTTTTTGCCATTGAGCTTGGGCAGAAAGGTGATCTTGGTGACGGTCTGGAATACTGGAGAGGCTTTTACCAGAGTCTAAGGCCTACTCAGTTTGGGCTTTCACTCAACATAGATGTATCAGCAAGAGCATTTTATGATCCTGTCCTGGTAACTGTGTTTGTGAAGAAACTTTTAAATTACAGAGAATTGTCAAGGCCTTTGCCTGATCGCGATCGTTTGAAGGTGAAAAAGGCCTTAAAGGGGCTCAAGGTAGCAGTTTCTTATCGTGAGAATAGATCTTATAAAATCAGTGGGGTCTCCGTCGAACCGCTGAACAAGTTGACGTTCACTCGAGAGGATAATAGTAGAATTTCAGTAGAACAATATTATCGCGATACGTACAATATTGTGCTAAGGGATGTGGCAATGCCTGCACTTCAATCTGGGAGCGATTCAAAACCTGTTTATTTGCCTATGGAGCTTTGTTCCATTGTTGCTGGGCAGAGGTACACTAAGAAGTTGAATGAGAGACAAGTAACAGCTCTTCTGAGAGCAACTTGTCAACGCCCTGGAGATAGAGAACGAAGTATATACCAGATGGTTAAACACAATGCTTACAATAAAGATGAGCTTGTCCAGCGGGAATTTGGAATGCATATAAGAGAAGATATGGCTTTAGTTAATGCTCGTGTGTTGCCGCCGCCTTCGCTGAAATACCATGACACTGGTCGTGAGAAGTCTGAAAATCCACGAATGGGGCAATGGAACATGATCAATAAGAAAATGGTTAACGGTGGTCGAGTGGATTTCTGGGCATGCGTCAATTTCTCCCGATTGGACCCAAATTTTAACTTCCGATTCTGTGAGGATTTGGTTAATATGTGTGGCAGCAAGGGAGTGCATTTCCATCCGCAACCTTTACTTGCTCATCAATCAGCACATCCTGGGCAAATAGAGAGGGTGCTTAGAGATATCCATAAGACGTCTAGCAAGAAACTTGATGAAATTGGACATAAGGGAAAGCCTCTTCAGTTGTTAATTGTCATTTTGCCTGATGTCACTGGATCATATGGGATGATAAAACGAATCTGTGAAACCGAGTTAGGAATCGTGTCTCAGTGCTGTCAGCCTAGGGCAGCATCAAAGCTGAGTAAACAATACCTTGAAAATTTATCGCTCAAGATAAATGTGAAGGTTGGCGGAAGGAACACTGTTTTGACCGACGCCATTGAAAGAAGGATTCCTCGGGTGAGTGACATTCCCACAATCATATTTGGTGCGGATGTTACCCATCCTCAACCTGGGGAGGACAGCAGTCCGTCAATTGCTGCTGTGGTGGCGTCCATGGATTGGCCAGAGGTCACCAAGTACAGAGGAATTGTTTCTGCACAGGTTCACCGTGAAGAAATCATCCAAGATCTGTATACTGTAAAACAGGACCCTAACAAGGGACTTATTGCTGGAGGAATGATCAGGGAGCATTTCCGAGCATTTCGACTAGCAACTGGCCAAATACCAAAAAGAGTAATCTTCTTCAGGGATGGAGTTAGCGAAGGGCAATTTAGTCAAGTTCTGTTGTATGAAATGGATGCTATAAGAAAGGCTTGTCAATCACTTCAGGAGGGATATCTGCCACCAGTTACTTTTGTTGTGGTGCAGAAAAGGCATCATACGCGCCTGTTCCCTACTGATAATCGGAGGACTGATAGGAGTGGCAATATTCAACCAGGCACTGTCGTTGACACCCAAATTTGTCATCCGACGGAGTTTGACTTCTATCTCAACAGTCATGCTGGCATTCAGGGAACTAGCAGGCCTGCACATTACCATGTCTTGTATGATGAGAACAATTTCACCGCAGATGCACTGCAGATGCTAACGAACAACCTATGCTACACGTATGCAAGATGCACTCGTTCAGTTTCCATTGTTCCTCCTGCTTACTATGCTCACTTGGCTGCCTTCCGTGCAAGATACTACATTGAAGGCGAGTACTCAGATGGAGGTTCTACTACCGGATCTACAGCTGGGGGTTCTGGTGGTGTGCGGTTCCGTGCCCTACCTGAGATAAAAGAAAATGTGAAAGAAGTTATGTTCTACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

982

Amino Acids

109.35

Weight (kDa)

9.54

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	134 - 273	4.5e-38	N-terminal domain of argonaute
ArgoL1	PF08699	284 - 332	6.9e-19	Argonaute linker 1 domain
PAZ	PF02170	360 - 462	2.2e-29	PAZ domain
ArgoL2	PF16488	472 - 519	3.2e-14	Argonaute linker 2 domain
ArgoMid	PF16487	529 - 607	5.1e-09	Mid domain of argonaute
Piwi	PF02171	626 - 941	3.1e-105	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1143
AatII	GACGTC	1 cut(s)	1826
AccB1I	GGYRCC	4 cut(s)	208, 244, 271, 683
AccB7I	CCANNNNNTGG	1 cut(s)	2190
AccBSI	CCGCTC	2 cut(s)	179, 332
AccI	GTMKAC	1 cut(s)	2264
AccII	CGCG	6 cut(s)	12, 18, 75, 1071, 1233, 2515
AclWI	GGATC	4 cut(s)	32, 992, 1912, 2866
AcoI	YGGCCR	5 cut(s)	13, 19, 642, 2192, 2347
AcsI	RAATTY	5 cut(s)	1209, 1484, 1684, 2008, 2589
AcuI	CTGAAG	5 cut(s)	501, 816, 1853, 2359, 2441
AcyI	GRCGYC	7 cut(s)	57, 209, 245, 272, 1823, 2064, 2180
AfaI	GTAC	5 cut(s)	47, 1241, 1349, 2210, 2834
AflIII	ACRYGT	1 cut(s)	2736
AjnI	CCWGG	7 cut(s)	163, 549, 1005, 1408, 1783, 2140, 2566
Alw26I	GTCTC	4 cut(s)	9, 1162, 1363, 1959
AlwI	GGATC	4 cut(s)	32, 992, 1912, 2866
AlwNI	CAGNNNCTG	2 cut(s)	319, 2573
Ama87I	CYCGRG	2 cut(s)	1191, 2085
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	7 cut(s)	520, 677, 772, 1728, 1976, 2168, 2798
ApoI	RAATTY	5 cut(s)	1209, 1484, 1684, 2008, 2589
Asp700I	GAANNNNTTC	2 cut(s)	2221, 2690
AspA2I	CCTAGG	1 cut(s)	1970
AspLEI	GCGC	5 cut(s)	119, 211, 247, 274, 2517
AsuC2I	CCSGG	2 cut(s)	378, 659
AsuNHI	GCTAGC	1 cut(s)	725
AvaI	CYCGRG	2 cut(s)	1191, 2085
AvaII	GGWCC	6 cut(s)	161, 403, 694, 736, 1678, 2278
AvrII	CCTAGG	1 cut(s)	1970
BaeGI	GKGCMC	2 cut(s)	149, 2899
BalI	TGGCCA	2 cut(s)	2194, 2349
BanI	GGYRCC	4 cut(s)	208, 244, 271, 683
BanII	GRGCYC	2 cut(s)	149, 1107
BarI	GAAGNNNNNNTAC	2 cut(s)	1368, 1400
BauI	CACGAG	2 cut(s)	234, 1527
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	7 cut(s)	532, 689, 784, 1740, 1988, 2155, 2785
BceAI	ACGGC	5 cut(s)	49, 64, 78, 138, 325
BciT130I	CCWGG	7 cut(s)	165, 551, 1007, 1410, 1785, 2142, 2568
BclI	TGATCA	2 cut(s)	1611, 2310
BcnI	CCSGG	2 cut(s)	378, 659
BcoDI	GTCTC	4 cut(s)	9, 1162, 1363, 1959
BfaI	CTAG	6 cut(s)	150, 726, 1827, 1971, 2339, 2649
BfmI	CTRYAG	2 cut(s)	2708, 2862
BfoI	RGCGCY	4 cut(s)	120, 212, 248, 275
BglII	AGATCT	3 cut(s)	448, 1136, 2257
BlnI	CCTAGG	1 cut(s)	1970
BmcAI	AGTACT	1 cut(s)	2834
Bme1390I	CCNGG	9 cut(s)	165, 378, 551, 659, 1007, 1410, 1785, 2142, 2568
Bme18I	GGWCC	6 cut(s)	161, 403, 694, 736, 1678, 2278
BmeT110I	CYCGRG	2 cut(s)	1191, 2085
BmrFI	CCNGG	9 cut(s)	165, 378, 551, 659, 1007, 1410, 1785, 2142, 2568
BmsI	GCATC	8 cut(s)	373, 497, 1988, 2419, 2515, 2692, 2703, 2738
BmtI	GCTAGC	1 cut(s)	729
BoxI	GACNNNNGTC	3 cut(s)	109, 1566, 2154
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpmI	CTGGAG	6 cut(s)	186, 247, 734, 937, 1431, 2322
Bpu10I	CCTNAGC	3 cut(s)	252, 285, 1253
BpuEI	CTTGAG	4 cut(s)	177, 771, 1091, 2003
BpuMI	CCSGG	2 cut(s)	378, 659
BsaAI	YACGTR	2 cut(s)	1239, 2739
BsaBI	GATNNNNATC	3 cut(s)	447, 453, 1071
BsaHI	GRCGYC	7 cut(s)	57, 209, 245, 272, 1823, 2064, 2180
BsaI	GGTCTC	1 cut(s)	1162
BsaWI	WCCGGW	2 cut(s)	733, 2855
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 214, 244
Bse118I	RCCGGY	4 cut(s)	205, 226, 241, 247
Bse1I	ACTGG	5 cut(s)	920, 1570, 1906, 2350, 2477
Bse3DI	GCAATG	2 cut(s)	1272, 1607
Bse8I	GATNNNNATC	3 cut(s)	447, 453, 1071
BseBI	CCWGG	7 cut(s)	165, 551, 1007, 1410, 1785, 2142, 2568
BseJI	GATNNNNATC	3 cut(s)	447, 453, 1071
BseMI	GCAATG	2 cut(s)	1272, 1607
BseMII	CTCAG	9 cut(s)	266, 276, 294, 962, 1379, 1970, 1979, 2850, 2895
BseNI	ACTGG	5 cut(s)	920, 1570, 1906, 2350, 2477
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	2 cut(s)	149, 2899
BseX3I	CGGCCG	2 cut(s)	13, 19
BseXI	GCAGC	7 cut(s)	532, 689, 784, 1740, 1988, 2155, 2785
BseYI	CCCAGC	4 cut(s)	565, 851, 1337, 2867
BsgI	GTGCAG	4 cut(s)	1257, 2211, 2516, 2643
Bsh1236I	CGCG	6 cut(s)	12, 18, 75, 1071, 1233, 2515
Bsh1285I	CGRYCG	3 cut(s)	16, 22, 1075
BshNI	GGYRCC	4 cut(s)	208, 244, 271, 683
BsiEI	CGRYCG	3 cut(s)	16, 22, 1075
BsiHKCI	CYCGRG	2 cut(s)	1191, 2085
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	117, 707, 2304
BsmAI	GTCTC	4 cut(s)	9, 1162, 1363, 1959
BsmFI	GGGAC	3 cut(s)	117, 707, 2304
BsmI	GAATGC	2 cut(s)	1497, 2637
Bso31I	GGTCTC	1 cut(s)	1162
BsoBI	CYCGRG	2 cut(s)	1191, 2085
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	149, 1107, 2899
Bsp19I	CCATGG	1 cut(s)	2184
Bsp68I	TCGCGA	2 cut(s)	1071, 1233
BspCNI	CTCAG	9 cut(s)	265, 277, 295, 961, 1380, 1969, 1980, 2849, 2896
BspFNI	CGCG	6 cut(s)	12, 18, 75, 1071, 1233, 2515
BspMAI	CTGCAG	1 cut(s)	2712
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	4 cut(s)	32, 992, 1912, 2866
BspQI	GCTCTTC	2 cut(s)	297, 1389
BspT107I	GGYRCC	4 cut(s)	208, 244, 271, 683
BspTNI	GGTCTC	1 cut(s)	1162
BsrBI	CCGCTC	2 cut(s)	179, 332
BsrDI	GCAATG	2 cut(s)	1272, 1607
BsrFI	RCCGGY	4 cut(s)	205, 226, 241, 247
BsrI	ACTGG	5 cut(s)	920, 1570, 1906, 2350, 2477
BssAI	RCCGGY	4 cut(s)	205, 226, 241, 247
BssNAI	GTATAC	1 cut(s)	2265
BssNI	GRCGYC	7 cut(s)	57, 209, 245, 272, 1823, 2064, 2180
BssSI	CACGAG	2 cut(s)	234, 1527
BssT1I	CCWWGG	3 cut(s)	351, 1970, 2184
Bst1107I	GTATAC	1 cut(s)	2265
Bst2BI	CACGAG	2 cut(s)	234, 1527
Bst2UI	CCWGG	7 cut(s)	165, 551, 1007, 1410, 1785, 2142, 2568
Bst6I	CTCTTC	3 cut(s)	297, 1389, 1872
BstACI	GRCGYC	7 cut(s)	57, 209, 245, 272, 1823, 2064, 2180
BstAPI	GCANNNNNTGC	2 cut(s)	683, 1271
BstBAI	YACGTR	2 cut(s)	1239, 2739
BstDSI	CCRYGG	4 cut(s)	16, 94, 154, 2184
BstEII	GGTNACC	1 cut(s)	2200
BstFNI	CGCG	6 cut(s)	12, 18, 75, 1071, 1233, 2515
BstH2I	RGCGCY	4 cut(s)	120, 212, 248, 275
BstHHI	GCGC	5 cut(s)	119, 211, 247, 274, 2517
BstMAI	GTCTC	4 cut(s)	9, 1162, 1363, 1959
BstMCI	CGRYCG	3 cut(s)	16, 22, 1075
BstNI	CCWGG	7 cut(s)	165, 551, 1007, 1410, 1785, 2142, 2568
BstNSI	RCATGY	1 cut(s)	1659
BstPAI	GACNNNNGTC	3 cut(s)	109, 1566, 2154
BstPI	GGTNACC	1 cut(s)	2200
BstSCI	CCNGG	9 cut(s)	163, 376, 549, 657, 1005, 1408, 1783, 2140, 2566
BstSFI	CTRYAG	2 cut(s)	2708, 2862
BstSLI	GKGCMC	2 cut(s)	149, 2899
BstSNI	TACGTA	1 cut(s)	1239
BstUI	CGCG	6 cut(s)	12, 18, 75, 1071, 1233, 2515
BstV1I	GCAGC	7 cut(s)	532, 689, 784, 1740, 1988, 2155, 2785
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	4 cut(s)	448, 1136, 2257, 2858
BstXI	CCANNNNNNTGG	1 cut(s)	1565
BstYI	RGATCY	4 cut(s)	448, 1136, 2257, 2858
BstZ17I	GTATAC	1 cut(s)	2265
BstZI	CGGCCG	2 cut(s)	13, 19
BtgI	CCRYGG	4 cut(s)	16, 94, 154, 2184
BtsI	GCAGTG	1 cut(s)	2705
BtsIMutI	CAGTG	8 cut(s)	843, 1156, 1563, 1899, 1964, 2049, 2571, 2705
BtuMI	TCGCGA	2 cut(s)	1071, 1233
CaiI	CAGNNNCTG	2 cut(s)	319, 2573
CciNI	GCGGCCGC	1 cut(s)	13
CfoI	GCGC	5 cut(s)	119, 211, 247, 274, 2517
Cfr10I	RCCGGY	4 cut(s)	205, 226, 241, 247
Cfr42I	CCGCGG	1 cut(s)	19
CseI	GACGC	5 cut(s)	65, 800, 1648, 2072, 2169
Csp6I	GTAC	5 cut(s)	46, 1240, 1348, 2209, 2833
CviAII	CATG	7 cut(s)	776, 1559, 1609, 1656, 2185, 2630, 2669
CviQI	GTAC	5 cut(s)	46, 1240, 1348, 2209, 2833
DinI	GGCGCC	3 cut(s)	210, 246, 273
DraI	TTTAAA	1 cut(s)	1035
EaeI	YGGCCR	5 cut(s)	13, 19, 642, 2192, 2347
EagI	CGGCCG	2 cut(s)	13, 19
Eam1104I	CTCTTC	3 cut(s)	297, 1389, 1872
EarI	CTCTTC	3 cut(s)	297, 1389, 1872
EciI	GGCGGA	5 cut(s)	102, 267, 324, 357, 2055
EclXI	CGGCCG	2 cut(s)	13, 19
Eco105I	TACGTA	1 cut(s)	1239
Eco130I	CCWWGG	3 cut(s)	351, 1970, 2184
Eco147I	AGGCCT	4 cut(s)	943, 1057, 1094, 2656
Eco24I	GRGCYC	2 cut(s)	149, 1107
Eco31I	GGTCTC	1 cut(s)	1162
Eco32I	GATATC	2 cut(s)	1813, 2468
Eco47I	GGWCC	6 cut(s)	161, 403, 694, 736, 1678, 2278
Eco52I	CGGCCG	2 cut(s)	13, 19
Eco57I	CTGAAG	5 cut(s)	501, 816, 1853, 2359, 2441
Eco88I	CYCGRG	2 cut(s)	1191, 2085
Eco91I	GGTNACC	1 cut(s)	2200
EcoO109I	RGGNCCY	3 cut(s)	146, 602, 2278
EcoO65I	GGTNACC	1 cut(s)	2200
EcoRII	CCWGG	7 cut(s)	163, 549, 1005, 1408, 1783, 2140, 2566
EcoRV	GATATC	2 cut(s)	1813, 2468
EcoT14I	CCWWGG	3 cut(s)	351, 1970, 2184
EcoT22I	ATGCAT	1 cut(s)	1497
EcoT38I	GRGCYC	2 cut(s)	149, 1107
EgeI	GGCGCC	3 cut(s)	210, 246, 273
EheI	GGCGCC	3 cut(s)	210, 246, 273
ErhI	CCWWGG	3 cut(s)	351, 1970, 2184
FaeI	CATG	7 cut(s)	779, 1562, 1612, 1659, 2188, 2633, 2672
FalI	AAGNNNNNCTT	6 cut(s)	879, 911, 1455, 1487, 2428, 2460
FaqI	GGGAC	3 cut(s)	117, 707, 2304
FatI	CATG	7 cut(s)	775, 1558, 1608, 1655, 2184, 2629, 2668
FauI	CCCGC	3 cut(s)	69, 289, 1473
FauNDI	CATATG	1 cut(s)	1909
FbaI	TGATCA	2 cut(s)	1611, 2310
FblI	GTMKAC	1 cut(s)	2264
FriOI	GRGCYC	2 cut(s)	149, 1107
FspBI	CTAG	6 cut(s)	150, 726, 1827, 1971, 2339, 2649
GlaI	GCGC	5 cut(s)	118, 210, 246, 273, 2516
GsaI	CCCAGC	4 cut(s)	569, 855, 1341, 2871
GsuI	CTGGAG	6 cut(s)	186, 247, 734, 937, 1431, 2322
HaeII	RGCGCY	4 cut(s)	120, 212, 248, 275
HgaI	GACGC	5 cut(s)	65, 800, 1648, 2072, 2169
HhaI	GCGC	5 cut(s)	119, 211, 247, 274, 2517
Hin1I	GRCGYC	7 cut(s)	57, 209, 245, 272, 1823, 2064, 2180
Hin1II	CATG	7 cut(s)	779, 1562, 1612, 1659, 2188, 2633, 2672
Hin6I	GCGC	5 cut(s)	117, 209, 245, 272, 2515
HinP1I	GCGC	5 cut(s)	117, 209, 245, 272, 2515
HincII	GTYRAC	4 cut(s)	1182, 1403, 1630, 2581
HindII	GTYRAC	4 cut(s)	1182, 1403, 1630, 2581
HpaI	GTTAAC	1 cut(s)	1630
Hpy166II	GTNNAC	9 cut(s)	1182, 1188, 1350, 1403, 1630, 1994, 2236, 2265, 2581
Hpy8I	GTNNAC	9 cut(s)	1182, 1188, 1350, 1403, 1630, 1994, 2236, 2265, 2581
Hpy99I	CGWCG	6 cut(s)	59, 130, 187, 1166, 2066, 2605
HpyCH4IV	ACGT	4 cut(s)	1184, 1238, 1823, 2738
HpySE526I	ACGT	4 cut(s)	1184, 1238, 1823, 2738
Hsp92I	GRCGYC	7 cut(s)	57, 209, 245, 272, 1823, 2064, 2180
Hsp92II	CATG	7 cut(s)	779, 1562, 1612, 1659, 2188, 2633, 2672
HspAI	GCGC	5 cut(s)	117, 209, 245, 272, 2515
KasI	GGCGCC	3 cut(s)	208, 244, 271
KroI	GCCGGC	3 cut(s)	205, 241, 247
KroNI	GCCGGC	3 cut(s)	207, 243, 249
Ksp22I	TGATCA	2 cut(s)	1611, 2310
KspAI	GTTAAC	1 cut(s)	1630
KspI	CCGCGG	1 cut(s)	19
LguI	GCTCTTC	2 cut(s)	297, 1389
Lsp1109I	GCAGC	7 cut(s)	532, 689, 784, 1740, 1988, 2155, 2785
LweI	GCATC	8 cut(s)	373, 497, 1988, 2419, 2515, 2692, 2703, 2738
MaeI	CTAG	6 cut(s)	150, 726, 1827, 1971, 2339, 2649
MaeII	ACGT	4 cut(s)	1184, 1238, 1823, 2738
MbiI	CCGCTC	2 cut(s)	179, 332
MfeI	CAATTG	1 cut(s)	2163
MflI	RGATCY	4 cut(s)	448, 1136, 2257, 2858
MhlI	GDGCHC	3 cut(s)	149, 1107, 2899
MlsI	TGGCCA	2 cut(s)	2194, 2349
MluNI	TGGCCA	2 cut(s)	2194, 2349
Mly113I	GGCGCC	3 cut(s)	209, 245, 272
MlyI	GAGTC	3 cut(s)	184, 788, 943
MmeI	TCCRAC	3 cut(s)	78, 206, 2624
Mox20I	TGGCCA	2 cut(s)	2194, 2349
Mph1103I	ATGCAT	1 cut(s)	1497
MreI	CGCCGGCG	1 cut(s)	205
MroNI	GCCGGC	3 cut(s)	205, 241, 247
MroXI	GAANNNNTTC	2 cut(s)	2221, 2690
MscI	TGGCCA	2 cut(s)	2194, 2349
MslI	CAYNNNNRTG	2 cut(s)	462, 2667
Msp20I	TGGCCA	2 cut(s)	2194, 2349
MspA1I	CMGCKG	6 cut(s)	18, 284, 680, 1171, 1480, 2867
MspR9I	CCNGG	9 cut(s)	165, 378, 551, 659, 1007, 1410, 1785, 2142, 2568
MunI	CAATTG	1 cut(s)	2163
Mva1269I	GAATGC	2 cut(s)	1497, 2637
MvaI	CCWGG	7 cut(s)	165, 551, 1007, 1410, 1785, 2142, 2568
MvnI	CGCG	6 cut(s)	12, 18, 75, 1071, 1233, 2515
NaeI	GCCGGC	3 cut(s)	207, 243, 249
NarI	GGCGCC	3 cut(s)	209, 245, 272
NciI	CCSGG	2 cut(s)	378, 659
NcoI	CCATGG	1 cut(s)	2184
NdeI	CATATG	1 cut(s)	1909
NgoMIV	GCCGGC	3 cut(s)	205, 241, 247
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	7 cut(s)	779, 1562, 1612, 1659, 2188, 2633, 2672
NmeAIII	GCCGAG	4 cut(s)	47, 248, 396, 670
NmuCI	GTSAC	6 cut(s)	187, 780, 899, 1897, 2093, 2200
NotI	GCGGCCGC	1 cut(s)	13
NruI	TCGCGA	2 cut(s)	1071, 1233
NsiI	ATGCAT	1 cut(s)	1497
NspI	RCATGY	1 cut(s)	1659
PaeI	GCATGC	1 cut(s)	1659
PaeR7I	CTCGAG	1 cut(s)	1191
PceI	AGGCCT	4 cut(s)	943, 1057, 1094, 2656
PciSI	GCTCTTC	2 cut(s)	297, 1389
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	2 cut(s)	1497, 2637
PdiI	GCCGGC	3 cut(s)	207, 243, 249
PdmI	GAANNNNTTC	2 cut(s)	2221, 2690
PfeI	GAWTC	7 cut(s)	140, 542, 1292, 1698, 1926, 1947, 2080
Pfl23II	CGTACG	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	2190
PfoI	TCCNGGA	1 cut(s)	163
Ple19I	CGATCG	1 cut(s)	1075
PleI	GAGTC	3 cut(s)	184, 787, 942
PluTI	GGCGCC	3 cut(s)	212, 248, 275
PpsI	GAGTC	3 cut(s)	184, 787, 942
Ppu21I	YACGTR	2 cut(s)	1239, 2739
PpuMI	RGGWCCY	1 cut(s)	2278
PshAI	GACNNNNGTC	3 cut(s)	109, 1566, 2154
PsiI	TTATAA	1 cut(s)	1143
Psp5II	RGGWCCY	1 cut(s)	2278
Psp6I	CCWGG	7 cut(s)	163, 549, 1005, 1408, 1783, 2140, 2566
PspEI	GGTNACC	1 cut(s)	2200
PspFI	CCCAGC	4 cut(s)	565, 851, 1337, 2867
PspGI	CCWGG	7 cut(s)	163, 549, 1005, 1408, 1783, 2140, 2566
PspLI	CGTACG	1 cut(s)	45
PspOMI	GGGCCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	2278
PstI	CTGCAG	1 cut(s)	2712
PstNI	CAGNNNCTG	2 cut(s)	319, 2573
PsuI	RGATCY	4 cut(s)	448, 1136, 2257, 2858
PvuI	CGATCG	1 cut(s)	1075
PvuII	CAGCTG	2 cut(s)	680, 2867
RruI	TCGCGA	2 cut(s)	1071, 1233
RsaI	GTAC	5 cut(s)	47, 1241, 1349, 2210, 2834
RsaNI	GTAC	5 cut(s)	46, 1240, 1348, 2209, 2833
RseI	CAYNNNNRTG	2 cut(s)	462, 2667
SacII	CCGCGG	1 cut(s)	19
SapI	GCTCTTC	2 cut(s)	297, 1389
ScaI	AGTACT	1 cut(s)	2834
SchI	GAGTC	3 cut(s)	184, 788, 943
ScrFI	CCNGG	9 cut(s)	165, 378, 551, 659, 1007, 1410, 1785, 2142, 2568
SduI	GDGCHC	3 cut(s)	149, 1107, 2899
SfaNI	GCATC	8 cut(s)	373, 497, 1988, 2419, 2515, 2692, 2703, 2738
SfcI	CTRYAG	2 cut(s)	2708, 2862
SfoI	GGCGCC	3 cut(s)	210, 246, 273
Sfr274I	CTCGAG	1 cut(s)	1191
Sfr303I	CCGCGG	1 cut(s)	19
SgrAI	CRCCGGYG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	19
SinI	GGWCC	6 cut(s)	161, 403, 694, 736, 1678, 2278
SlaI	CTCGAG	1 cut(s)	1191
SmiMI	CAYNNNNRTG	2 cut(s)	462, 2667
SmlI	CTYRAG	5 cut(s)	192, 786, 1106, 1191, 2018
SmoI	CTYRAG	5 cut(s)	192, 786, 1106, 1191, 2018
SnaBI	TACGTA	1 cut(s)	1239
SphI	GCATGC	1 cut(s)	1659
SseBI	AGGCCT	4 cut(s)	943, 1057, 1094, 2656
SspDI	GGCGCC	3 cut(s)	208, 244, 271
SspI	AATATT	3 cut(s)	1226, 1246, 2560
SspMI	CTAG	6 cut(s)	150, 726, 1827, 1971, 2339, 2649
StuI	AGGCCT	4 cut(s)	943, 1057, 1094, 2656
StyD4I	CCNGG	9 cut(s)	163, 376, 549, 657, 1005, 1408, 1783, 2140, 2566
StyI	CCWWGG	3 cut(s)	351, 1970, 2184
TaiI	ACGT	4 cut(s)	1187, 1241, 1826, 2741
TaqI	TCGA	7 cut(s)	470, 491, 620, 1164, 1192, 1639, 2335
TaqII	GACCGA	2 cut(s)	711, 2075
TatI	WGTACW	2 cut(s)	2208, 2832
TauI	GCSGC	9 cut(s)	15, 18, 21, 30, 179, 340, 677, 1540, 1543
TfiI	GAWTC	7 cut(s)	140, 542, 1292, 1698, 1926, 1947, 2080
TscAI	CASTG	8 cut(s)	850, 1156, 1570, 1906, 1964, 2056, 2578, 2712
TseFI	GTSAC	6 cut(s)	187, 780, 899, 1897, 2093, 2200
TseI	GCWGC	7 cut(s)	520, 677, 772, 1728, 1976, 2168, 2798
Tsp45I	GTSAC	6 cut(s)	187, 780, 899, 1897, 2093, 2200
TspDTI	ATGAA	3 cut(s)	596, 1857, 2436
TspGWI	ACGGA	5 cut(s)	1150, 2148, 2618, 2795, 2882
TspRI	CASTG	8 cut(s)	850, 1156, 1570, 1906, 1964, 2056, 2578, 2712
Van91I	CCANNNNNTGG	1 cut(s)	2190
VpaK11BI	GGWCC	6 cut(s)	161, 403, 694, 736, 1678, 2278
XapI	RAATTY	5 cut(s)	1209, 1484, 1684, 2008, 2589
XceI	RCATGY	1 cut(s)	1659
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1484, 2138
XhoI	CTCGAG	1 cut(s)	1191
XmaJI	CCTAGG	1 cut(s)	1970
XmiI	GTMKAC	1 cut(s)	2264
XmnI	GAANNNNTTC	2 cut(s)	2221, 2690
XspI	CTAG	6 cut(s)	150, 726, 1827, 1971, 2339, 2649
ZraI	GACGTC	1 cut(s)	1824
ZrmI	AGTACT	1 cut(s)	2834
Zsp2I	ATGCAT	1 cut(s)	1497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.