Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

34221179 .. 34222180

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0297000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCCAGAAATGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCCTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTTAAGAGCCGAAACCTTCTCTGCGTCAAGGAAACTTTTCAGCCTTCCACTTGAGACAAAGAAGCACAACCTTAATCCAAATCCTTACCACGGTTACCTTGGACCAAGTGTCCACGCTCCCTTGTATGAAGGCTTTGGCTTTGAGGAAGCATCCAACTATGAATCCCTTAGTAGCTTGACAGAAGATATATGGAGTCATGACCAGTTTTGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGTTGAAAGATATGATTAACTTGATGATTCTTGATAGCTATGGTTTGGAAGAGACATCAAATTTGATCATGGTGTCCAAGACACTGCTACGGTTACAGAAGTACACGGCACCTCCTTCAAGGGAGTACACCATGGGATCCCCGGCTCACACTGACAAGAATTTTGGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGAATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCTTTCGTCTTTGTTGTTGGAGACTCCCTCATGGTACAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

233

Amino Acids

26.65

Weight (kDa)

4.91

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 90	7.5e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	165 - 231	1.5e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 514
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	537, 550
AcsI	RAATTY	4 cut(s)	38, 49, 466, 565
AfaI	GTAC	4 cut(s)	86, 509, 533, 693
AfiI	CCNNNNNNNGG	2 cut(s)	28, 254
AgsI	TTSAA	4 cut(s)	412, 525, 608, 614
AhdI	GACNNNNNGTC	1 cut(s)	272
AluBI	AGCT	3 cut(s)	339, 400, 444
AluI	AGCT	3 cut(s)	339, 400, 444
Alw26I	GTCTC	3 cut(s)	212, 452, 672
AlwI	GGATC	2 cut(s)	537, 550
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	4 cut(s)	38, 49, 466, 565
ArsI	GACNNNNNNTTYG	4 cut(s)	451, 483, 551, 583
Asp700I	GAANNNNTTC	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	84, 514
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	528
BclI	TGATCA	2 cut(s)	471, 589
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	3 cut(s)	212, 452, 672
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	3 cut(s)	86, 516, 544
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	5 cut(s)	67, 253, 262, 537, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 254
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	5 cut(s)	67, 253, 262, 537, 546
BseGI	GGATG	2 cut(s)	314, 409
BseLI	CCNNNNNNNGG	2 cut(s)	28, 254
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	2 cut(s)	84, 514
BsiSI	CCGG	2 cut(s)	29, 548
BslI	CCNNNNNNNGG	2 cut(s)	28, 254
BsmAI	GTCTC	3 cut(s)	212, 452, 672
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	471, 542, 589
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	86, 516, 544
BspPI	GGATC	2 cut(s)	537, 550
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 514
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	5 cut(s)	67, 253, 262, 537, 546
BssMI	GATC	3 cut(s)	471, 542, 589
BssT1I	CCWWGG	2 cut(s)	262, 537
Bst4CI	ACNGT	3 cut(s)	257, 379, 498
Bst6I	CTCTTC	1 cut(s)	450
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	2 cut(s)	253, 537
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	314, 409
BstKTI	GATC	3 cut(s)	474, 545, 592
BstMAI	GTCTC	3 cut(s)	212, 452, 672
BstMBI	GATC	3 cut(s)	471, 542, 589
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	546
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	2 cut(s)	253, 537
BtsCI	GGATG	2 cut(s)	314, 409
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	3 cut(s)	375, 488, 555
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	4 cut(s)	85, 508, 532, 692
CviAII	CATG	4 cut(s)	362, 475, 538, 688
CviJI	RGCY	9 cut(s)	113, 173, 207, 297, 303, 339, 400, 444, 551
CviKI_1	RGCY	9 cut(s)	113, 173, 207, 297, 303, 339, 400, 444, 551
CviQI	GTAC	4 cut(s)	85, 508, 532, 692
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	3 cut(s)	473, 544, 591
DpnII	GATC	3 cut(s)	471, 542, 589
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	450
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	262, 537
Eco147I	AGGCCT	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	64, 266
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	38, 49
EcoT14I	CCWWGG	2 cut(s)	262, 537
ErhI	CCWWGG	2 cut(s)	262, 537
FaeI	CATG	4 cut(s)	365, 478, 541, 691
FatI	CATG	4 cut(s)	361, 474, 537, 687
FbaI	TGATCA	2 cut(s)	471, 589
Fnu4HI	GCNGC	1 cut(s)	398
FokI	GGATG	2 cut(s)	301, 416
Fsp4HI	GCNGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	29, 548
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	365, 478, 541, 691
HinfI	GANTC	6 cut(s)	11, 25, 326, 358, 433, 680
HpaII	CCGG	2 cut(s)	29, 548
Hpy166II	GTNNAC	3 cut(s)	277, 510, 534
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	107, 362, 437, 605
Hpy8I	GTNNAC	3 cut(s)	277, 510, 534
HpyAV	CCTTC	5 cut(s)	94, 190, 218, 287, 531
HpyCH4III	ACNGT	3 cut(s)	257, 379, 498
HpyCH4V	TGCA	2 cut(s)	96, 375
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	365, 478, 541, 691
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	471, 589
Kzo9I	GATC	3 cut(s)	471, 542, 589
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	8 cut(s)	35, 42, 69, 127, 380, 386, 561, 585
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	257, 498
MalI	GATC	3 cut(s)	473, 544, 591
MboI	GATC	3 cut(s)	471, 542, 589
MboII	GAAGA	2 cut(s)	359, 467
MflI	RGATCY	1 cut(s)	542
MluCI	AATT	7 cut(s)	38, 49, 121, 138, 466, 565, 697
MlyI	GAGTC	2 cut(s)	367, 674
MmeI	TCCRAC	2 cut(s)	342, 655
MnlI	CCTC	7 cut(s)	62, 103, 168, 301, 528, 663, 695
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	4 cut(s)	167, 237, 423, 700
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	29, 548
MspR9I	CCNGG	1 cut(s)	548
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	3 cut(s)	471, 542, 589
NlaIII	CATG	4 cut(s)	365, 478, 541, 691
NlaIV	GGNNCC	3 cut(s)	86, 516, 544
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	11, 25, 326, 433
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	2 cut(s)	366, 674
PpsI	GAGTC	2 cut(s)	366, 674
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	3 cut(s)	86, 516, 544
PspPI	GGNCC	2 cut(s)	64, 266
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	4 cut(s)	86, 509, 533, 693
RsaNI	GTAC	4 cut(s)	85, 508, 532, 692
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	4 cut(s)	167, 237, 423, 700
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	3 cut(s)	471, 542, 589
Sau96I	GGNCC	2 cut(s)	64, 266
SchI	GAGTC	2 cut(s)	367, 674
ScrFI	CCNGG	1 cut(s)	548
SfaNI	GCATC	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	38, 49, 121, 138, 466, 565, 697
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	262, 537
TaaI	ACNGT	3 cut(s)	257, 379, 498
TaqI	TCGA	3 cut(s)	106, 135, 585
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	7 cut(s)	38, 49, 121, 138, 466, 565, 697
TatI	WGTACW	2 cut(s)	507, 531
TfiI	GAWTC	4 cut(s)	11, 25, 326, 433
Tru1I	TTAA	4 cut(s)	167, 237, 423, 700
Tru9I	TTAA	4 cut(s)	167, 237, 423, 700
TscAI	CASTG	3 cut(s)	382, 495, 562
TseI	GCWGC	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	62, 306, 339, 407, 639
TspRI	CASTG	3 cut(s)	382, 495, 562
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	4 cut(s)	38, 49, 466, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.