Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Forward (+)

34234496 .. 34235664

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0297100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTGGTTTGCTATCCCTCCACACCGAAGAAGAAAGCTTTGGCTGTGGGATTTTTCATTTCGGCTGCTGCTCTTTTCGCTTACGGTGTGCATCTCTCCTATGTCAACGTTGCGCCTCAGCAAGCTCGAACCAAAGCTCGAAATGAGTTTGTTAGAGAACGATTGAAACAGAAATATGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

61

Amino Acids

6.85

Weight (kDa)

10.24

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	3 cut(s)	38, 125, 137
AluI	AGCT	3 cut(s)	38, 125, 137
ApeKI	GCWGC	2 cut(s)	65, 68
AspLEI	GCGC	1 cut(s)	115
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	52, 55
BisI	GCNGC	2 cut(s)	66, 69
BlsI	GCNGC	2 cut(s)	67, 70
BmsI	GCATC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	52, 55
BspCNI	CTCAG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	52, 55
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	115
CviJI	RGCY	5 cut(s)	38, 44, 65, 125, 137
CviKI_1	RGCY	5 cut(s)	38, 44, 65, 125, 137
DdeI	CTNAG	1 cut(s)	117
FaiI	YATR	2 cut(s)	102, 177
Fnu4HI	GCNGC	2 cut(s)	66, 69
Fsp4HI	GCNGC	2 cut(s)	66, 69
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	66, 69
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	108
HspAI	GCGC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	52, 55
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	108
MboII	GAAGA	2 cut(s)	40, 43
MnlI	CCTC	2 cut(s)	28, 126
MwoI	GCNNNNNNNGC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	67, 70
Psp1406I	AACGTT	1 cut(s)	108
SatI	GCNGC	2 cut(s)	66, 69
SetI	ASST	4 cut(s)	40, 111, 127, 139
SfaNI	GCATC	1 cut(s)	100
SgeI	CNNG	3 cut(s)	134, 138, 150
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	127, 139
TseI	GCWGC	2 cut(s)	65, 68
TspDTI	ATGAA	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.