Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59488765 .. 59494271

Gene Structure 5507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGTCCGGACGCGGCAGCCGAGGCAGGCATTATTCCGGCGGTCGCTCTAATCCCTCGCACGGCGGAGGCGGCAGAGGAAGTTTCAGCGGCGGAGGAAGTTCAGGCGCCGCAGCTCCGGCGCCGACTCAAACTCGAGCTTATTTTCCTCCGGCGGCCTCGTCAAGCTCGGCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGGAGACGACGACGACGGCCGCCGTGGCTGCTGTGCCGCCGGCGTCGTCGAAGGCGGTGAGGTTTCCGCAGAGGCCGGGGTTCGGGACGGTCGGTAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACCTCCATCATTACGATGTTACGATTACCCCAGAAGTAGCATCAAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTTCGCTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCAACTTCTTCGAAAAGAAAGGATCGAGAGTTTAAAGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGCGTGTTGAAACGCCACAAGAGGCAATACAAGTCCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAATACTGGAGGGGGTTTTACCAAAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCAGCAAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCAAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAATGGACTATCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGAGAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCCATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCTGGACAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATAACACAGATGATCAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAGAGAGGAAATGTCATTGGTTAAAGCTCGGGTTTTACCATCCCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTTATCCCCAGATGGGGCAGTGGAACATGACAAACAAGAAAATGGTCAATGGAGGTAGGTTGCAAGTCTGGGCATTTGTCAATTTCTCCAGAGTGTCCCAAGATATTACTTTTGAGTTTCTTGGGGCTTTGGTTGATGTGTGCAACAGTAAGGGGATGGAGTTTTTTCCCCAACCCTTGCTTCCAGTACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCTGCTCAGCAAGGACGACAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAATAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGTGGAAGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCGCTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCAGCCGGGGATGACAGTAGCCCATCAATAGCAGCAGTTGTCGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACAAATATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCGTTGCCTTCTATAAACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGTTACATGAGGTGGATGCTATAAGAAGGGCTTGTGCCTCTTTGGAGGATGGATATATGCCAACAGTGACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGCTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATCTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGACTCATCCGATGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTTTCCGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

955

Amino Acids

107.12

Weight (kDa)

9.53

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	104 - 246	4.2e-37	N-terminal domain of argonaute
ArgoL1	PF08699	257 - 305	2.7e-18	Argonaute linker 1 domain
PAZ	PF02170	330 - 441	4.3e-25	PAZ domain
ArgoL2	PF16488	451 - 501	3.4e-09	Argonaute linker 2 domain
ArgoMid	PF16487	512 - 589	1.5e-09	Mid domain of argonaute
Piwi	PF02171	601 - 920	9e-108	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1421, 2001
AarI	CACCTGC	1 cut(s)	2722
Acc36I	ACCTGC	2 cut(s)	337, 2722
AccB1I	GGYRCC	2 cut(s)	104, 118
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	856
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	2 cut(s)	5, 2824
AclWI	GGATC	2 cut(s)	406, 621
AcoI	YGGCCR	3 cut(s)	231, 1205, 2123
AcsI	RAATTY	4 cut(s)	315, 474, 1430, 2543
AcuI	CTGAAG	1 cut(s)	1778
AcyI	GRCGYC	3 cut(s)	105, 119, 257
AfaI	GTAC	7 cut(s)	761, 1178, 1716, 1749, 2424, 2509, 2678
AfiI	CCNNNNNNNGG	9 cut(s)	59, 296, 346, 421, 566, 1020, 1541, 1542, 2072
AflII	CTTAAG	1 cut(s)	1946
AgsI	TTSAA	8 cut(s)	320, 594, 698, 917, 1018, 1217, 1233, 2501
AjnI	CCWGG	4 cut(s)	339, 1729, 2503, 2577
AjuI	GAANNNNNNNTTGG	2 cut(s)	1692, 1724
AloI	GAACNNNNNNTCC	2 cut(s)	2575, 2607
Alw21I	GWGCWC	3 cut(s)	2690, 2749, 2806
Alw26I	GTCTC	5 cut(s)	212, 354, 449, 1395, 1887
Alw44I	GTGCAC	2 cut(s)	2686, 2802
AlwI	GGATC	2 cut(s)	406, 621
AlwNI	CAGNNNCTG	1 cut(s)	2510
Ama87I	CYCGRG	3 cut(s)	132, 1347, 1473
Aor13HI	TCCGGA	2 cut(s)	5, 2824
AoxI	GGCC	8 cut(s)	153, 231, 287, 515, 800, 1205, 2123, 2323
ApaLI	GTGCAC	2 cut(s)	2686, 2802
ApeKI	GCWGC	9 cut(s)	15, 110, 242, 575, 578, 581, 2069, 2099, 2161
ApoI	RAATTY	4 cut(s)	315, 474, 1430, 2543
AspLEI	GCGC	3 cut(s)	107, 121, 2161
AspS9I	GGNCC	3 cut(s)	515, 800, 1053
AsuC2I	CCSGG	2 cut(s)	291, 2074
AsuHPI	GGTGA	7 cut(s)	283, 436, 830, 940, 1015, 2159, 2777
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	3 cut(s)	132, 1347, 1473
AvaII	GGWCC	1 cut(s)	1053
BaeGI	GKGCMC	2 cut(s)	2690, 2806
BaeI	ACNNNNGTAYC	2 cut(s)	2499, 2532
BalI	TGGCCA	2 cut(s)	1207, 2125
BanI	GGYRCC	2 cut(s)	104, 118
BanII	GRGCYC	2 cut(s)	1899, 2821
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	3 cut(s)	2690, 2749, 2806
BbvI	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 2081, 2111, 2173
BceAI	ACGGC	6 cut(s)	76, 221, 246, 2269, 2574, 2765
BcgI	CGANNNNNNTGC	6 cut(s)	1148, 1182, 2136, 2170, 2423, 2457
BciT130I	CCWGG	4 cut(s)	341, 1731, 2505, 2579
BclI	TGATCA	3 cut(s)	1377, 1819, 2458
BcnI	CCSGG	2 cut(s)	291, 2074
BcoDI	GTCTC	5 cut(s)	212, 354, 449, 1395, 1887
BfaI	CTAG	2 cut(s)	815, 872
BfmI	CTRYAG	7 cut(s)	576, 582, 1101, 2140, 2302, 2538, 2703
BfoI	RGCGCY	2 cut(s)	108, 122
BfrI	CTTAAG	1 cut(s)	1946
BfuAI	ACCTGC	2 cut(s)	337, 2722
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	2 cut(s)	905, 2188
BlpI	GCTNAGC	1 cut(s)	1776
Bme1390I	CCNGG	6 cut(s)	291, 341, 1731, 2074, 2505, 2579
Bme18I	GGWCC	1 cut(s)	1053
BmeT110I	CYCGRG	3 cut(s)	132, 1347, 1473
BmgT120I	GGNCC	3 cut(s)	515, 800, 1053
BmiI	GGNNCC	3 cut(s)	106, 120, 171
BmrFI	CCNGG	6 cut(s)	291, 341, 1731, 2074, 2505, 2579
BmsI	GCATC	6 cut(s)	410, 1981, 1998, 2173, 2347, 2443
BoxI	GACNNNNGTC	1 cut(s)	1512
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	4 cut(s)	1247, 1279, 2753, 2785
BpmI	CTGGAG	3 cut(s)	236, 856, 1600
Bpu1102I	GCTNAGC	1 cut(s)	1776
Bpu14I	TTCGAA	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	291, 2074
BsaAI	YACGTR	1 cut(s)	2676
BsaHI	GRCGYC	3 cut(s)	105, 119, 257
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	7 cut(s)	19, 237, 290, 534, 1346, 2073, 2578
BsaWI	WCCGGW	3 cut(s)	5, 172, 2824
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 2040, 2070
Bsc4I	CCNNNNNNNGG	9 cut(s)	59, 296, 346, 421, 566, 1020, 1541, 1542, 2072
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	7 cut(s)	219, 441, 839, 1055, 1712, 2326, 2797
Bse3DI	GCAATG	3 cut(s)	518, 1231, 1490
BseAI	TCCGGA	2 cut(s)	5, 2824
BseBI	CCWGG	4 cut(s)	341, 1731, 2505, 2579
BseDI	CCNNGG	7 cut(s)	19, 237, 290, 534, 1346, 2073, 2578
BseGI	GGATG	8 cut(s)	1484, 1689, 1726, 2062, 2083, 2362, 2395, 2771
BseLI	CCNNNNNNNGG	9 cut(s)	59, 296, 346, 421, 566, 1020, 1541, 1542, 2072
BseMI	GCAATG	3 cut(s)	518, 1231, 1490
BseMII	CTCAG	7 cut(s)	176, 783, 924, 1765, 1790, 1898, 2202
BseNI	ACTGG	7 cut(s)	219, 441, 839, 1055, 1712, 2326, 2797
BseSI	GKGCMC	2 cut(s)	2690, 2806
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 2081, 2111, 2173
BseYI	CCCAGC	1 cut(s)	867
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	5 cut(s)	43, 234, 306, 2026, 2696
BshFI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 2125, 2325
BshNI	GGYRCC	2 cut(s)	104, 118
BsiEI	CGRYCG	5 cut(s)	43, 234, 306, 2026, 2696
BsiHKAI	GWGCWC	3 cut(s)	2690, 2749, 2806
BsiHKCI	CYCGRG	3 cut(s)	132, 1347, 1473
BsiSI	CCGG	9 cut(s)	6, 36, 116, 149, 173, 254, 290, 2073, 2825
BsiWI	CGTACG	1 cut(s)	2676
BslFI	GGGAC	5 cut(s)	313, 1061, 1128, 1364, 1609
BslI	CCNNNNNNNGG	9 cut(s)	59, 296, 346, 421, 566, 1020, 1541, 1542, 2072
BsmAI	GTCTC	5 cut(s)	212, 354, 449, 1395, 1887
BsmBI	CGTCTC	3 cut(s)	212, 449, 1395
BsmFI	GGGAC	5 cut(s)	313, 1061, 1128, 1364, 1609
BsnI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 2125, 2325
Bso31I	GGTCTC	1 cut(s)	354
BsoBI	CYCGRG	3 cut(s)	132, 1347, 1473
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	5 cut(s)	1899, 2690, 2749, 2806, 2821
Bsp13I	TCCGGA	2 cut(s)	5, 2824
Bsp1720I	GCTNAGC	1 cut(s)	1776
BspANI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 2125, 2325
BspCNI	CTCAG	7 cut(s)	177, 784, 925, 1764, 1789, 1897, 2203
BspEI	TCCGGA	2 cut(s)	5, 2824
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	106, 120, 171
BspMAI	CTGCAG	3 cut(s)	580, 586, 1105
BspMI	ACCTGC	2 cut(s)	337, 2722
BspPI	GGATC	2 cut(s)	406, 621
BspQI	GCTCTTC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	2 cut(s)	104, 118
BspTI	CTTAAG	1 cut(s)	1946
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	3 cut(s)	518, 1231, 1490
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	7 cut(s)	219, 441, 839, 1055, 1712, 2326, 2797
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	7 cut(s)	19, 237, 290, 534, 1346, 2073, 2578
BssNI	GRCGYC	3 cut(s)	105, 119, 257
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	4 cut(s)	341, 1731, 2505, 2579
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	3 cut(s)	105, 119, 257
BstAFI	CTTAAG	1 cut(s)	1946
BstBAI	YACGTR	1 cut(s)	2676
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	6 cut(s)	26, 255, 689, 1209, 1222, 2030
BstDEI	CTNAG	9 cut(s)	185, 737, 792, 933, 1751, 1776, 1884, 1891, 2211
BstDSI	CCRYGG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	8 cut(s)	1484, 1689, 1726, 2062, 2083, 2362, 2395, 2771
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	108, 122
BstHHI	GCGC	3 cut(s)	107, 121, 2161
BstMAI	GTCTC	5 cut(s)	212, 354, 449, 1395, 1887
BstMCI	CGRYCG	5 cut(s)	43, 234, 306, 2026, 2696
BstNI	CCWGG	4 cut(s)	341, 1731, 2505, 2579
BstPAI	GACNNNNGTC	1 cut(s)	1512
BstSCI	CCNGG	6 cut(s)	289, 339, 1729, 2072, 2503, 2577
BstSFI	CTRYAG	7 cut(s)	576, 582, 1101, 2140, 2302, 2538, 2703
BstSLI	GKGCMC	2 cut(s)	2690, 2806
BstSNI	TACGTA	1 cut(s)	2676
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 2081, 2111, 2173
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	3 cut(s)	411, 905, 2188
BstXI	CCANNNNNNTGG	1 cut(s)	1511
BstYI	RGATCY	3 cut(s)	411, 905, 2188
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 2125, 2325
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	8 cut(s)	1484, 1689, 1726, 2062, 2083, 2362, 2395, 2771
BtsI	GCAGTG	2 cut(s)	1553, 2631
BveI	ACCTGC	2 cut(s)	337, 2722
Cac8I	GCNNGC	6 cut(s)	26, 255, 689, 1209, 1222, 2030
CaiI	CAGNNNCTG	1 cut(s)	2510
CfoI	GCGC	3 cut(s)	107, 121, 2161
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	515, 800, 1053
CseI	GACGC	3 cut(s)	18, 246, 466
CsiI	ACCWGGT	1 cut(s)	2503
Csp6I	GTAC	7 cut(s)	760, 1177, 1715, 1748, 2423, 2508, 2677
CviAII	CATG	7 cut(s)	493, 1505, 1555, 2228, 2348, 2567, 2606
CviQI	GTAC	7 cut(s)	760, 1177, 1715, 1748, 2423, 2508, 2677
DdeI	CTNAG	9 cut(s)	185, 737, 792, 933, 1751, 1776, 1884, 1891, 2211
DinI	GGCGCC	2 cut(s)	106, 120
DraI	TTTAAA	2 cut(s)	625, 1986
EaeI	YGGCCR	3 cut(s)	231, 1205, 2123
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	2 cut(s)	78, 105
EclXI	CGGCCG	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	2676
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	1899, 2821
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	1053
Eco52I	CGGCCG	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	1778
Eco88I	CYCGRG	3 cut(s)	132, 1347, 1473
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	4 cut(s)	339, 1729, 2503, 2577
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	1899, 2821
EgeI	GGCGCC	2 cut(s)	106, 120
EheI	GGCGCC	2 cut(s)	106, 120
ErhI	CCWWGG	1 cut(s)	534
Esp3I	CGTCTC	3 cut(s)	212, 449, 1395
FaeI	CATG	7 cut(s)	496, 1508, 1558, 2231, 2351, 2570, 2609
FalI	AAGNNNNNCTT	8 cut(s)	998, 1030, 1114, 1146, 1401, 1433, 2356, 2388
FaqI	GGGAC	5 cut(s)	313, 1061, 1128, 1364, 1609
FatI	CATG	7 cut(s)	492, 1504, 1554, 2227, 2347, 2566, 2605
FauI	CCCGC	1 cut(s)	1014
FbaI	TGATCA	3 cut(s)	1377, 1819, 2458
FblI	GTMKAC	1 cut(s)	856
FokI	GGATG	8 cut(s)	1471, 1696, 1713, 2049, 2090, 2369, 2402, 2758
FriOI	GRGCYC	2 cut(s)	1899, 2821
FspBI	CTAG	2 cut(s)	815, 872
GlaI	GCGC	3 cut(s)	106, 120, 2160
GsaI	CCCAGC	1 cut(s)	871
GsuI	CTGGAG	3 cut(s)	236, 856, 1600
HaeII	RGCGCY	2 cut(s)	108, 122
HaeIII	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 2125, 2325
HapII	CCGG	9 cut(s)	6, 36, 116, 149, 173, 254, 290, 2073, 2825
HgaI	GACGC	3 cut(s)	18, 246, 466
HhaI	GCGC	3 cut(s)	107, 121, 2161
Hin1I	GRCGYC	3 cut(s)	105, 119, 257
Hin1II	CATG	7 cut(s)	496, 1508, 1558, 2231, 2351, 2570, 2609
Hin6I	GCGC	3 cut(s)	105, 119, 2159
HinP1I	GCGC	3 cut(s)	105, 119, 2159
HincII	GTYRAC	3 cut(s)	210, 1340, 2518
HindII	GTYRAC	3 cut(s)	210, 1340, 2518
HinfI	GANTC	7 cut(s)	124, 1229, 1412, 1829, 2574, 2628, 2768
HpaII	CCGG	9 cut(s)	6, 36, 116, 149, 173, 254, 290, 2073, 2825
HphI	GGTGA	7 cut(s)	283, 436, 830, 940, 1015, 2159, 2777
Hpy166II	GTNNAC	9 cut(s)	210, 762, 857, 1128, 1243, 1340, 2518, 2688, 2804
Hpy188I	TCNGA	7 cut(s)	326, 454, 754, 2212, 2478, 2776, 2816
Hpy188III	TCNNGA	9 cut(s)	6, 298, 617, 989, 1349, 1517, 1617, 2289, 2825
Hpy8I	GTNNAC	9 cut(s)	210, 762, 857, 1128, 1243, 1340, 2518, 2688, 2804
Hpy99I	CGWCG	6 cut(s)	226, 229, 232, 262, 265, 2290
HpyAV	CCTTC	8 cut(s)	259, 815, 1954, 2209, 2269, 2315, 2361, 2831
HpyCH4IV	ACGT	3 cut(s)	1342, 2411, 2675
HpyF3I	CTNAG	9 cut(s)	185, 737, 792, 933, 1751, 1776, 1884, 1891, 2211
HpySE526I	ACGT	3 cut(s)	1342, 2411, 2675
Hsp92I	GRCGYC	3 cut(s)	105, 119, 257
Hsp92II	CATG	7 cut(s)	496, 1508, 1558, 2231, 2351, 2570, 2609
HspAI	GCGC	3 cut(s)	105, 119, 2159
KasI	GGCGCC	2 cut(s)	104, 118
Kpn2I	TCCGGA	2 cut(s)	5, 2824
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Ksp22I	TGATCA	3 cut(s)	1377, 1819, 2458
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	5 cut(s)	118, 175, 199, 1255, 2048
Lsp1109I	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 2081, 2111, 2173
LweI	GCATC	6 cut(s)	410, 1981, 1998, 2173, 2347, 2443
MabI	ACCWGGT	1 cut(s)	2503
MaeI	CTAG	2 cut(s)	815, 872
MaeII	ACGT	3 cut(s)	1342, 2411, 2675
MaeIII	GTNAC	9 cut(s)	379, 928, 1312, 2017, 2056, 2131, 2343, 2407, 2765
MboII	GAAGA	9 cut(s)	508, 582, 591, 1018, 1076, 1148, 1855, 1983, 2017
MfeI	CAATTG	2 cut(s)	1266, 2148
MflI	RGATCY	3 cut(s)	411, 905, 2188
MhlI	GDGCHC	5 cut(s)	1899, 2690, 2749, 2806, 2821
MlsI	TGGCCA	2 cut(s)	1207, 2125
MluNI	TGGCCA	2 cut(s)	1207, 2125
Mly113I	GGCGCC	2 cut(s)	105, 119
MlyI	GAGTC	2 cut(s)	118, 2762
Mox20I	TGGCCA	2 cut(s)	1207, 2125
MreI	CGCCGGCG	1 cut(s)	253
MroI	TCCGGA	2 cut(s)	5, 2824
MroNI	GCCGGC	1 cut(s)	253
MscI	TGGCCA	2 cut(s)	1207, 2125
MslI	CAYNNNNRTG	6 cut(s)	375, 926, 1509, 2169, 2172, 2604
Msp20I	TGGCCA	2 cut(s)	1207, 2125
MspA1I	CMGCKG	2 cut(s)	87, 581
MspCI	CTTAAG	1 cut(s)	1946
MspI	CCGG	9 cut(s)	6, 36, 116, 149, 173, 254, 290, 2073, 2825
MspR9I	CCNGG	6 cut(s)	291, 341, 1731, 2074, 2505, 2579
MunI	CAATTG	2 cut(s)	1266, 2148
MvaI	CCWGG	4 cut(s)	341, 1731, 2505, 2579
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	1 cut(s)	255
NarI	GGCGCC	2 cut(s)	105, 119
NciI	CCSGG	2 cut(s)	291, 2074
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	7 cut(s)	496, 1508, 1558, 2231, 2351, 2570, 2609
NlaIV	GGNNCC	3 cut(s)	106, 120, 171
NmeAIII	GCCGAG	2 cut(s)	44, 146
NmuCI	GTSAC	6 cut(s)	928, 1312, 2017, 2131, 2407, 2765
NspV	TTCGAA	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	2722
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	5 cut(s)	1229, 1412, 1829, 2574, 2628
Pfl23II	CGTACG	1 cut(s)	2676
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	1729
Ple19I	CGATCG	2 cut(s)	2026, 2696
PleI	GAGTC	2 cut(s)	118, 2762
PluTI	GGCGCC	2 cut(s)	108, 122
PpsI	GAGTC	2 cut(s)	118, 2762
Ppu21I	YACGTR	1 cut(s)	2676
PshAI	GACNNNNGTC	1 cut(s)	1512
PsiI	TTATAA	2 cut(s)	1421, 2001
Psp6I	CCWGG	4 cut(s)	339, 1729, 2503, 2577
PspFI	CCCAGC	1 cut(s)	867
PspGI	CCWGG	4 cut(s)	339, 1729, 2503, 2577
PspLI	CGTACG	1 cut(s)	2676
PspN4I	GGNNCC	3 cut(s)	106, 120, 171
PspPI	GGNCC	3 cut(s)	515, 800, 1053
PspXI	VCTCGAGB	1 cut(s)	132
PstI	CTGCAG	3 cut(s)	580, 586, 1105
PstNI	CAGNNNCTG	1 cut(s)	2510
PsuI	RGATCY	3 cut(s)	411, 905, 2188
PvuI	CGATCG	2 cut(s)	2026, 2696
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	7 cut(s)	761, 1178, 1716, 1749, 2424, 2509, 2678
RsaNI	GTAC	7 cut(s)	760, 1177, 1715, 1748, 2423, 2508, 2677
RseI	CAYNNNNRTG	6 cut(s)	375, 926, 1509, 2169, 2172, 2604
SapI	GCTCTTC	1 cut(s)	491
Sau96I	GGNCC	3 cut(s)	515, 800, 1053
SchI	GAGTC	2 cut(s)	118, 2762
ScrFI	CCNGG	6 cut(s)	291, 341, 1731, 2074, 2505, 2579
SduI	GDGCHC	5 cut(s)	1899, 2690, 2749, 2806, 2821
SexAI	ACCWGGT	1 cut(s)	2503
SfaNI	GCATC	6 cut(s)	410, 1981, 1998, 2173, 2347, 2443
SfcI	CTRYAG	7 cut(s)	576, 582, 1101, 2140, 2302, 2538, 2703
SfoI	GGCGCC	2 cut(s)	106, 120
Sfr274I	CTCGAG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	602
SgrAI	CRCCGGYG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	1053
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	6 cut(s)	375, 926, 1509, 2169, 2172, 2604
SmlI	CTYRAG	2 cut(s)	132, 1946
SmoI	CTYRAG	2 cut(s)	132, 1946
SnaBI	TACGTA	1 cut(s)	2676
SspDI	GGCGCC	2 cut(s)	104, 118
SspI	AATATT	4 cut(s)	889, 1163, 1928, 2497
SspMI	CTAG	2 cut(s)	815, 872
StyD4I	CCNGG	6 cut(s)	289, 339, 1729, 2072, 2503, 2577
StyI	CCWWGG	1 cut(s)	534
TaiI	ACGT	3 cut(s)	1345, 2414, 2678
TaqI	TCGA	6 cut(s)	133, 263, 602, 616, 2288, 2743
TaqII	GACCGA	1 cut(s)	2036
TatI	WGTACW	3 cut(s)	759, 1176, 1714
TauI	GCSGC	7 cut(s)	15, 72, 90, 110, 155, 236, 253
TfiI	GAWTC	5 cut(s)	1229, 1412, 1829, 2574, 2628
TseFI	GTSAC	6 cut(s)	928, 1312, 2017, 2131, 2407, 2765
TseI	GCWGC	9 cut(s)	15, 110, 242, 575, 578, 581, 2069, 2099, 2161
Tsp45I	GTSAC	6 cut(s)	928, 1312, 2017, 2131, 2407, 2765
TspDTI	ATGAA	5 cut(s)	443, 509, 1821, 2190, 2216
TspGWI	ACGGA	1 cut(s)	2132
Van91I	CCANNNNNTGG	1 cut(s)	566
Vha464I	CTTAAG	1 cut(s)	1946
VneI	GTGCAC	2 cut(s)	2686, 2802
VpaK11BI	GGWCC	1 cut(s)	1053
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	4 cut(s)	315, 474, 1430, 2543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	856
XspI	CTAG	2 cut(s)	815, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.