Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

19020340 .. 19021352

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTAGTGGACTTATCAACTCGTTCCGTAGTCTCCGATAAGTTCTACGGCGGACACGGCTACCCTTTGCTAACATTTGATGAACAAACAGTCGCAAGTGAGCTCCCACTGTCCTACAAACCATTTGTCAACTCGGTGAAGAAGAGGGGGCTTAACTTGTCCGAGGTGGTTTGCACCACGTTTTCAGTCGGGTGGTTTGGCGAAGAACATAAGAAAAGAGTGATCAAAGTTTTGTGTTACTATATTGAGGGAACACCTAACTTGTACATGAGGCCCTTGGAGGGAATATCACCGGTGGTTGATCTTGATGAGCTAAAGATAGCCGAGTATTATGACCGGGATAGGGTTCCGGTGCCGAAAGCTCAAGGAACCGAGTATCGGCTGTCAAAGCAGAAGCCACCTTTCGGTCCCAGATTAATGGCAAAGAACACGTCAGGAAGGAAGGATCGGGGAAAGAGGCAAAGAGCCATTAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

160

Amino Acids

18.18

Weight (kDa)

9.58

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	22 - 119	5e-23	Copper amine oxidase, N3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	4 cut(s)	281, 343, 378, 404
AflIII	ACRYGT	1 cut(s)	429
AgeI	ACCGGT	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	432
AluBI	AGCT	3 cut(s)	103, 313, 362
AluI	AGCT	3 cut(s)	103, 313, 362
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	453
AoxI	GGCC	1 cut(s)	272
ArsI	GACNNNNNNTTYG	4 cut(s)	111, 143, 416, 448
AseI	ATTAAT	1 cut(s)	416
AsiGI	ACCGGT	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	273, 407
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	148, 282
AvaII	GGWCC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BceAI	ACGGC	2 cut(s)	64, 73
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	273, 407
BmiI	GGNNCC	4 cut(s)	348, 354, 370, 409
BmrFI	CCNGG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	162, 276
BsaWI	WCCGGW	2 cut(s)	292, 349
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 343, 378, 404
Bse118I	RCCGGY	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	162, 276
BseLI	CCNNNNNNNGG	4 cut(s)	281, 343, 378, 404
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	352
BshTI	ACCGGT	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	293, 337, 350
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	4 cut(s)	281, 343, 378, 404
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	222, 301, 445
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	274
BspLI	GGNNCC	4 cut(s)	348, 354, 370, 409
BspPI	GGATC	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	162, 276
BssMI	GATC	3 cut(s)	222, 301, 445
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	91, 111
Bst6I	CTCTTC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	264
BstKTI	GATC	3 cut(s)	225, 304, 448
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	222, 301, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 388
BstSCI	CCNGG	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	273, 407
Csp6I	GTAC	1 cut(s)	265
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	1 cut(s)	268
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	3 cut(s)	224, 303, 447
DpnII	GATC	3 cut(s)	222, 301, 445
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	210, 243, 269, 333
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	3 cut(s)	293, 337, 350
Hin1II	CATG	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HpaII	CCGG	3 cut(s)	293, 337, 350
HphI	GGTGA	2 cut(s)	148, 282
Hpy166II	GTNNAC	2 cut(s)	10, 130
Hpy188I	TCNGA	2 cut(s)	37, 163
Hpy188III	TCNNGA	2 cut(s)	305, 435
Hpy8I	GTNNAC	2 cut(s)	10, 130
HpyAV	CCTTC	2 cut(s)	432, 436
HpyCH4III	ACNGT	2 cut(s)	91, 111
HpyCH4IV	ACGT	2 cut(s)	179, 431
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 388
HpySE526I	ACGT	2 cut(s)	179, 431
Hsp92II	CATG	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	222, 301, 445
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	306, 350, 363, 420, 424
MaeII	ACGT	2 cut(s)	179, 431
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	224, 303, 447
MboI	GATC	3 cut(s)	222, 301, 445
MboII	GAAGA	3 cut(s)	151, 154, 215
MhlI	GDGCHC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	138, 157, 241, 264, 274, 450
MseI	TTAA	2 cut(s)	153, 416
MspI	CCGG	3 cut(s)	293, 337, 350
MspR9I	CCNGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	57, 388
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	222, 301, 445
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	4 cut(s)	348, 354, 370, 409
NmeAIII	GCCGAG	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	4 cut(s)	348, 354, 370, 409
PspPI	GGNCC	2 cut(s)	273, 407
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	153, 416
Sau3AI	GATC	3 cut(s)	222, 301, 445
Sau96I	GGNCC	2 cut(s)	273, 407
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	105, 168, 182, 259, 315, 364, 403, 434
SgrAI	CRCCGGYG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SsiI	CCGC	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	91, 111
TaiI	ACGT	2 cut(s)	182, 434
TaqII	GACCGA	1 cut(s)	395
TatI	WGTACW	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	153, 416
Tru9I	TTAA	2 cut(s)	153, 416
TscAI	CASTG	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	407
VspI	ATTAAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.