Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

23670240 .. 23673849

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGGAATTTGTTCGTGAAGAAACCCAAGATCACCGATGTCGATCGAGCTATTCTCTCTCTCAAGACCCAGAGACGCAAGCTCGGTCAATACCAACAACAGCTTGAAGCTGTAATTGAAGCAGAAAAGCAGGCTGCAAGGGACTTGATTCGTGATAAGAAAAAGGAAAGAGCCTTATTAGCATTGAAGAAGAAAAAGGCACAAGAAGAATTATTGAAGCAAGTAGATACCTGGGTTATTAATGTTGAGCAACAATTGCAAGATATTGAACTATCAAGCAAGCAGAAAGCTGTATTTGAGAGTTTGAAGGCCGGTAATAATGCAATTAAAGCTATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGAGGAAGCTAAAGTTTACCAAGATGAAATTAGTGCAATTTTGGGGGAGAAATTATCAACCGAAGATGAAGAGGAAATTTTAGCAGAATTTGACAACTTGGAAGCTCAGATCACTGTTCAAGACCTTCCTGAAGCTCCTGCTTCGGTGCCGGGTCATCAAGATGAGAAGTTGGACCTTCCCGATGTACCAACCAAAGTACCAGTTGCACCTGATGTGGTCGCAGATGATGCAAAAGATTCAGCTAAGAGTAAAGTTATGGAGGAACCGGTGTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

220

Amino Acids

24.64

Weight (kDa)

4.73

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 193	1.2e-41	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AcsI	RAATTY	3 cut(s)	7, 459, 470
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	570, 582
AgeI	ACCGGT	1 cut(s)	649
AgsI	TTSAA	8 cut(s)	107, 119, 187, 217, 269, 307, 365, 503
AjnI	CCWGG	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	3 cut(s)	7, 459, 470
AseI	ATTAAT	1 cut(s)	240
AsiGI	ACCGGT	1 cut(s)	649
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	556
BaeI	ACNNNNGTAYC	4 cut(s)	219, 252, 564, 597
BanI	GGYRCC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	232, 534
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	531, 648
BmrFI	CCNGG	2 cut(s)	232, 534
BmsI	GCATC	1 cut(s)	601
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpuEI	CTTGAG	2 cut(s)	47, 374
BpuMI	CCSGG	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	649
Bse118I	RCCGGY	2 cut(s)	311, 649
Bse1I	ACTGG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	364, 382
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	375, 503
BseNI	ACTGG	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	529
BshTI	ACCGGT	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	312, 533, 650
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	30, 43, 345, 492
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	376, 502
BspLI	GGNNCC	2 cut(s)	531, 648
BspT107I	GGYRCC	1 cut(s)	529
BsrFI	RCCGGY	2 cut(s)	311, 649
BsrI	ACTGG	1 cut(s)	584
BssAI	RCCGGY	2 cut(s)	311, 649
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	30, 43, 345, 492
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	2 cut(s)	256, 611
BstC8I	GCNNGC	3 cut(s)	80, 132, 281
BstDEI	CTNAG	3 cut(s)	384, 489, 627
BstF5I	GGATG	2 cut(s)	364, 382
BstKTI	GATC	4 cut(s)	33, 46, 348, 495
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	30, 43, 345, 492
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 256, 329, 611
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	230, 532
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	364, 382
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	80, 132, 281
Cfr10I	RCCGGY	2 cut(s)	311, 649
Cfr13I	GGNCC	1 cut(s)	556
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	569, 581
CspAI	ACCGGT	1 cut(s)	649
CviQI	GTAC	2 cut(s)	569, 581
DdeI	CTNAG	3 cut(s)	384, 489, 627
DpnI	GATC	4 cut(s)	32, 45, 347, 494
DpnII	GATC	4 cut(s)	30, 43, 345, 492
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	2 cut(s)	335, 641
FaqI	GGGAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	371, 389
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	3 cut(s)	312, 533, 650
HgaI	GACGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	148, 620
HpaII	CCGG	3 cut(s)	312, 533, 650
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	7 cut(s)	16, 64, 152, 503, 512, 542, 563
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	3 cut(s)	301, 518, 569
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	6 cut(s)	137, 259, 323, 419, 590, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 256, 329, 611
HpyF3I	CTNAG	3 cut(s)	384, 489, 627
Kzo9I	GATC	4 cut(s)	30, 43, 345, 492
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	601
MalI	GATC	4 cut(s)	32, 45, 347, 494
MboI	GATC	4 cut(s)	30, 43, 345, 492
MboII	GAAGA	6 cut(s)	31, 199, 202, 218, 458, 464
MfeI	CAATTG	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	4 cut(s)	349, 379, 448, 637
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	240, 327
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	3 cut(s)	312, 533, 650
MspR9I	CCNGG	2 cut(s)	232, 534
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	179, 256, 329, 611
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	4 cut(s)	30, 43, 345, 492
NlaIV	GGNNCC	2 cut(s)	531, 648
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	148, 620
PinAI	ACCGGT	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	531, 648
PspPI	GGNCC	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	570, 582
RsaNI	GTAC	2 cut(s)	569, 581
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	240, 327
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	4 cut(s)	30, 43, 345, 492
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	232, 534
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	62, 353
SmoI	CTYRAG	2 cut(s)	62, 353
StyD4I	CCNGG	2 cut(s)	230, 532
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	42, 46
TaqII	GACCGA	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	148, 620
Tru1I	TTAA	2 cut(s)	240, 327
Tru9I	TTAA	2 cut(s)	240, 327
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	423, 465
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	556
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	3 cut(s)	7, 459, 470
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.