FvH4_4g15360

amine oxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
19049366 .. 19051285
1920 bp
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UTR
Exon/CDS
Intron
FvH4_4g15360.t1

Sequence Viewer

Length: 1362 bp
ATGGGTGTTGTTCCGGTGCCAAGGGGGGAGAGAACCGAGTACCAGGCCTCAAAGCAGATGCCGCCTTTCGGTCCACGACTAAACGGTGCTTCAGTGTTGTCCGCCGGAGATGGTTTCGTCCTCGACGGGAACACTATCAGATGGGCCAACTGGGTTTTTCATCTCGGATTTGATGTTCGCACTGGAACGATTATATCTCAAGCATCAATTTACGATCTGGACAAGAAGAAATACAGGAGAGTTTTGTACAGAGGGTTTGTCTCAGAGCTGTTTGTGCCATACATGAACCCAACTGCTGACTGGTACTACAAAACCTTCTTTGACAACGGAGAGTTTGGGTTCGGCCAATCTACCGTCTCGCTTGAACCCTTGACTGATTGTCCTAACAATGCCAAGTTCATAGATGCCTACTATGCTTCACAAGACGGCACACCTGTGAAGATATCAAACGCTATTTGTATCTTTGAACGACACGCAGGAAACATCTTGTGGCGTCACACAGAAGTTACCATCCCAGATGAAGTGATAACGGAGGTGAGGCCGGAGGTCACTCTAGTGGTGAGGATGATTGCAGTTGTGGGCAACTATGACTACATAATCGATTGGGAGTTTAAGCCATGTTGGGCTAACTGGTGTGCTATAGAAACTGAAGGGGTCAAATACACCCACAAAAACCAAATAGACAAAGAAGTTTATGGTACACTAGTAACAGATAACACAATTGCTGTGAACCATGACCACTTCTTGACTTACTATCTTGACCTTGATGTGGACGGTGAAGGCAACACTTTTGTTAAGAACAATTTGGTGACTAAACGTGTGACAGACCCGAGTATTCCAAGAAAGAGTTACTGGACAGTTGTAAGCGAGACCGCTAAGACTGAATCAGATGCAAAAATTCACTTGGGTTTGAAGCCTTCTGAACTAGTTGTGGTGAACCCTAACAAAAGGACCAAACCTGGAAATCATATCGGTTATCGCTTGATTCCGGGATCAGTTGCAGCACCCCTTCTGTTAGAGGATGATTACCCACACATTCGTGGTGCTTTTACGAAGTACAATGTGTGGCTTACACCGTACAACAAGTCGGAAAAATGGGCCGGAGGACAATATGTTGATCAAAGCCGAGGAGGCGATACCTTAGCAGTTTGGAGCCTCAGGGATAGGGAAATTGAGAACAAAGACATAGTGCTGTGGTACACCATTGGCTTTCACCATGTTACTTGCCAAGAAGACTTTCCAATGATGCCAACATTAAGTGGTGGATTTGAGCTCCGGCCAACTAATTTCTTTGAGAGTAGTCCAGTGCTTAAAGTTAGGATTACAGTACCACCTCCTAAGCATGCATGCGCACTCGCCTAA

Protein Analysis

454

Amino Acids

51.35

Weight (kDa)

6.08

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_amine_oxid PF01179 34 - 437 2.7e-126 Copper amine oxidase, enzyme domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1351
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 3 cut(s) 62, 102, 873
AclWI GGATC 1 cut(s) 1000
AcoI YGGCCR 2 cut(s) 343, 1277
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 2 cut(s) 75, 669
AcyI GRCGYC 1 cut(s) 493
AfaI GTAC 8 cut(s) 41, 248, 305, 700, 1058, 1079, 1199, 1329
AfiI CCNNNNNNNGG 2 cut(s) 68, 769
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 3 cut(s) 365, 467, 913
AhdI GACNNNNNGTC 1 cut(s) 378
AhlI ACTAGT 2 cut(s) 703, 925
AjnI CCWGG 2 cut(s) 42, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 1221, 1253
AleI CACNNNNGTG 3 cut(s) 434, 554, 1038
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 2 cut(s) 268, 1273
AluI AGCT 2 cut(s) 268, 1273
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 3 cut(s) 265, 361, 863
AlwI GGATC 1 cut(s) 1000
Ama87I CYCGRG 1 cut(s) 829
AoxI GGCC 6 cut(s) 45, 144, 343, 539, 1098, 1277
ApeKI GCWGC 1 cut(s) 1001
ApoI RAATTY 1 cut(s) 897
Asp700I GAANNNNTTC 1 cut(s) 1236
AspLEI GCGC 1 cut(s) 1352
AspS9I GGNCC 4 cut(s) 71, 144, 951, 1098
AsuC2I CCSGG 1 cut(s) 990
AsuHPI GGTGA 6 cut(s) 547, 571, 788, 820, 946, 1205
AvaI CYCGRG 1 cut(s) 829
AvaII GGWCC 2 cut(s) 71, 951
AxyI CCTNAGG 1 cut(s) 1157
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 1275
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 1275
BbvI GCAGC 1 cut(s) 1013
BccI CCATC 3 cut(s) 104, 135, 518
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 44, 960
BclI TGATCA 1 cut(s) 1117
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 3 cut(s) 265, 361, 863
BcuI ACTAGT 2 cut(s) 703, 925
BfaI CTAG 3 cut(s) 554, 704, 926
BfmI CTRYAG 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 1131
BisI GCNGC 2 cut(s) 62, 1002
BlsI GCNGC 2 cut(s) 63, 1003
Bme1390I CCNGG 3 cut(s) 44, 960, 990
Bme18I GGWCC 2 cut(s) 71, 951
BmeRI GACNNNNNGTC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 829
BmgT120I GGNCC 4 cut(s) 71, 144, 951, 1098
BmiI GGNNCC 2 cut(s) 18, 1154
BmrFI CCNGG 3 cut(s) 44, 960, 990
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 5 cut(s) 48, 212, 394, 880, 1236
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 1239
Bpu10I CCTNAGC 2 cut(s) 1141, 1338
BpuEI CTTGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 990
Bsa29I ATCGAT 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 493
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 2 cut(s) 20, 1126
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 769
Bse1I ACTGG 6 cut(s) 155, 187, 305, 635, 857, 1304
Bse21I CCTNAGG 1 cut(s) 1157
BseBI CCWGG 2 cut(s) 44, 960
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 20, 1126
BseGI GGATG 3 cut(s) 510, 570, 1027
BseLI CCNNNNNNNGG 2 cut(s) 68, 769
BseMII CTCAG 2 cut(s) 276, 1171
BseNI ACTGG 6 cut(s) 155, 187, 305, 635, 857, 1304
BseRI GAGGAG 1 cut(s) 1143
BseXI GCAGC 1 cut(s) 1013
BshFI GGCC 6 cut(s) 47, 146, 345, 541, 1100, 1279
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 1275
BsiHKCI CYCGRG 1 cut(s) 829
BsiSI CCGG 6 cut(s) 14, 105, 542, 989, 1101, 1276
BslI CCNNNNNNNGG 2 cut(s) 68, 769
BsmAI GTCTC 3 cut(s) 265, 361, 863
BsmBI CGTCTC 1 cut(s) 361
BsnI GGCC 6 cut(s) 47, 146, 345, 541, 1100, 1279
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 829
Bsp1286I GDGCHC 1 cut(s) 1275
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 3 cut(s) 214, 992, 1117
BspACI CCGC 3 cut(s) 62, 102, 873
BspANI GGCC 6 cut(s) 47, 146, 345, 541, 1100, 1279
BspCNI CTCAG 2 cut(s) 275, 1170
BspDI ATCGAT 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 18, 1154
BspPI GGATC 1 cut(s) 1000
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 6 cut(s) 155, 187, 305, 635, 857, 1304
BssECI CCNNGG 2 cut(s) 20, 1126
BssMI GATC 3 cut(s) 214, 992, 1117
BssNI GRCGYC 1 cut(s) 493
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 44, 960
Bst4CI ACNGT 6 cut(s) 86, 355, 776, 859, 1077, 1327
BstACI GRCGYC 1 cut(s) 493
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 1344, 1348
BstDEI CTNAG 5 cut(s) 262, 876, 1141, 1157, 1338
BstF5I GGATG 3 cut(s) 510, 570, 1027
BstHHI GCGC 1 cut(s) 1352
BstKTI GATC 3 cut(s) 217, 995, 1120
BstMAI GTCTC 3 cut(s) 265, 361, 863
BstMBI GATC 3 cut(s) 214, 992, 1117
BstMWI GCNNNNNNNGC 4 cut(s) 61, 274, 413, 1131
BstNI CCWGG 2 cut(s) 44, 960
BstNSI RCATGY 2 cut(s) 1346, 1350
BstSCI CCNGG 3 cut(s) 42, 958, 988
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 1 cut(s) 1013
BstV2I GAAGAC 1 cut(s) 1239
Bsu15I ATCGAT 1 cut(s) 600
Bsu36I CCTNAGG 1 cut(s) 1157
BsuRI GGCC 6 cut(s) 47, 146, 345, 541, 1100, 1279
BsuTUI ATCGAT 1 cut(s) 600
BtsCI GGATG 3 cut(s) 510, 570, 1027
BtsIMutI CAGTG 3 cut(s) 99, 180, 1311
Cac8I GCNNGC 2 cut(s) 1344, 1348
CfoI GCGC 1 cut(s) 1352
Cfr13I GGNCC 4 cut(s) 71, 144, 951, 1098
ClaI ATCGAT 1 cut(s) 600
CseI GACGC 1 cut(s) 482
Csp6I GTAC 8 cut(s) 40, 247, 304, 699, 1057, 1078, 1198, 1328
CviAII CATG 6 cut(s) 283, 618, 734, 1217, 1343, 1347
CviQI GTAC 8 cut(s) 40, 247, 304, 699, 1057, 1078, 1198, 1328
DdeI CTNAG 5 cut(s) 262, 876, 1141, 1157, 1338
DpnI GATC 3 cut(s) 216, 994, 1119
DpnII GATC 3 cut(s) 214, 992, 1117
DriI GACNNNNNGTC 1 cut(s) 378
EaeI YGGCCR 2 cut(s) 343, 1277
Eam1105I GACNNNNNGTC 1 cut(s) 378
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 1273
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 1275
Eco31I GGTCTC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 71, 951
Eco53kI GAGCTC 1 cut(s) 1273
Eco57I CTGAAG 2 cut(s) 75, 669
Eco81I CCTNAGG 1 cut(s) 1157
Eco88I CYCGRG 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 1273
EcoRII CCWGG 2 cut(s) 42, 958
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 1348
EcoT38I GRGCYC 1 cut(s) 1275
ErhI CCWWGG 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 6 cut(s) 286, 621, 737, 1220, 1346, 1350
FatI CATG 6 cut(s) 282, 617, 733, 1216, 1342, 1346
FbaI TGATCA 1 cut(s) 1117
Fnu4HI GCNGC 2 cut(s) 62, 1002
FokI GGATG 3 cut(s) 497, 577, 1034
FriOI GRGCYC 1 cut(s) 1275
Fsp4HI GCNGC 2 cut(s) 62, 1002
FspAI RTGCGCAY 1 cut(s) 1351
FspBI CTAG 3 cut(s) 554, 704, 926
FspI TGCGCA 1 cut(s) 1351
GlaI GCGC 1 cut(s) 1351
GluI GCNGC 2 cut(s) 62, 1002
HaeIII GGCC 6 cut(s) 47, 146, 345, 541, 1100, 1279
HapII CCGG 6 cut(s) 14, 105, 542, 989, 1101, 1276
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 1352
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 6 cut(s) 286, 621, 737, 1220, 1346, 1350
Hin6I GCGC 1 cut(s) 1350
HinP1I GCGC 1 cut(s) 1350
HinfI GANTC 2 cut(s) 884, 985
HpaII CCGG 6 cut(s) 14, 105, 542, 989, 1101, 1276
HphI GGTGA 6 cut(s) 547, 571, 788, 820, 946, 1205
Hpy166II GTNNAC 6 cut(s) 74, 701, 730, 772, 937, 1200
Hpy188I TCNGA 6 cut(s) 140, 167, 265, 889, 922, 1090
Hpy188III TCNNGA 3 cut(s) 218, 745, 758
Hpy8I GTNNAC 6 cut(s) 74, 701, 730, 772, 937, 1200
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 5 cut(s) 325, 644, 773, 927, 1019
HpyCH4III ACNGT 6 cut(s) 86, 355, 776, 859, 1077, 1327
HpyCH4IV ACGT 1 cut(s) 817
HpyCH4V TGCA 4 cut(s) 572, 893, 1001, 1346
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 274, 413, 1131
HpyF3I CTNAG 5 cut(s) 262, 876, 1141, 1157, 1338
HpySE526I ACGT 1 cut(s) 817
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 6 cut(s) 286, 621, 737, 1220, 1346, 1350
HspAI GCGC 1 cut(s) 1350
Ksp22I TGATCA 1 cut(s) 1117
Kzo9I GATC 3 cut(s) 214, 992, 1117
LmnI GCTCC 2 cut(s) 1152, 1278
Lsp1109I GCAGC 1 cut(s) 1013
LweI GCATC 5 cut(s) 48, 212, 394, 880, 1236
MaeI CTAG 3 cut(s) 554, 704, 926
MaeII ACGT 1 cut(s) 817
MaeIII GTNAC 8 cut(s) 494, 505, 547, 706, 808, 820, 848, 1219
MalI GATC 3 cut(s) 216, 994, 1119
MboI GATC 3 cut(s) 214, 992, 1117
MboII GAAGA 3 cut(s) 238, 451, 1244
MfeI CAATTG 1 cut(s) 720
MhlI GDGCHC 1 cut(s) 1275
MluCI AATT 6 cut(s) 207, 720, 802, 897, 1170, 1285
MmeI TCCRAC 1 cut(s) 1068
Mph1103I ATGCAT 1 cut(s) 1348
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 4 cut(s) 612, 795, 1256, 1311
MslI CAYNNNNRTG 3 cut(s) 434, 554, 1038
MspI CCGG 6 cut(s) 14, 105, 542, 989, 1101, 1276
MspR9I CCNGG 3 cut(s) 44, 960, 990
MunI CAATTG 1 cut(s) 720
MvaI CCWGG 2 cut(s) 44, 960
MwoI GCNNNNNNNGC 4 cut(s) 61, 274, 413, 1131
NciI CCSGG 1 cut(s) 990
NdeII GATC 3 cut(s) 214, 992, 1117
NlaIII CATG 6 cut(s) 286, 621, 737, 1220, 1346, 1350
NlaIV GGNNCC 2 cut(s) 18, 1154
NmeAIII GCCGAG 1 cut(s) 1151
NmuCI GTSAC 4 cut(s) 494, 547, 808, 820
NsbI TGCGCA 1 cut(s) 1351
NsiI ATGCAT 1 cut(s) 1348
NspI RCATGY 2 cut(s) 1346, 1350
OliI CACNNNNGTG 3 cut(s) 434, 554, 1038
PaeI GCATGC 2 cut(s) 1346, 1350
PceI AGGCCT 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 2 cut(s) 884, 985
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 2 cut(s) 63, 1003
Psp124BI GAGCTC 1 cut(s) 1275
Psp6I CCWGG 2 cut(s) 42, 958
PspGI CCWGG 2 cut(s) 42, 958
PspN4I GGNNCC 2 cut(s) 18, 1154
PspPI GGNCC 4 cut(s) 71, 144, 951, 1098
RsaI GTAC 8 cut(s) 41, 248, 305, 700, 1058, 1079, 1199, 1329
RsaNI GTAC 8 cut(s) 40, 247, 304, 699, 1057, 1078, 1198, 1328
RseI CAYNNNNRTG 3 cut(s) 434, 554, 1038
SacI GAGCTC 1 cut(s) 1275
SaqAI TTAA 4 cut(s) 612, 795, 1256, 1311
SatI GCNGC 2 cut(s) 62, 1002
Sau3AI GATC 3 cut(s) 214, 992, 1117
Sau96I GGNCC 4 cut(s) 71, 144, 951, 1098
ScrFI CCNGG 3 cut(s) 44, 960, 990
SduI GDGCHC 1 cut(s) 1275
SfaNI GCATC 5 cut(s) 48, 212, 394, 880, 1236
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 2 cut(s) 71, 951
SmiMI CAYNNNNRTG 3 cut(s) 434, 554, 1038
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SpeI ACTAGT 2 cut(s) 703, 925
SphI GCATGC 2 cut(s) 1346, 1350
Sse9I AATT 6 cut(s) 207, 720, 802, 897, 1170, 1285
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 3 cut(s) 62, 102, 873
SspMI CTAG 3 cut(s) 554, 704, 926
SstI GAGCTC 1 cut(s) 1275
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 42, 958, 988
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 6 cut(s) 86, 355, 776, 859, 1077, 1327
TaiI ACGT 1 cut(s) 820
TaqI TCGA 2 cut(s) 123, 600
TaqII GACCGA 1 cut(s) 59
TasI AATT 6 cut(s) 207, 720, 802, 897, 1170, 1285
TatI WGTACW 2 cut(s) 246, 1056
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 884, 985
Tru1I TTAA 4 cut(s) 612, 795, 1256, 1311
Tru9I TTAA 4 cut(s) 612, 795, 1256, 1311
TscAI CASTG 3 cut(s) 99, 187, 1311
TseFI GTSAC 4 cut(s) 494, 547, 808, 820
TseI GCWGC 1 cut(s) 1001
Tsp45I GTSAC 4 cut(s) 494, 547, 808, 820
TspDTI ATGAA 4 cut(s) 149, 299, 388, 534
TspGWI ACGGA 2 cut(s) 342, 545
TspRI CASTG 3 cut(s) 99, 187, 1311
VpaK11BI GGWCC 2 cut(s) 71, 951
XapI RAATTY 1 cut(s) 897
XceI RCATGY 2 cut(s) 1346, 1350
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 3 cut(s) 554, 704, 926
Zsp2I ATGCAT 1 cut(s) 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.