Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

41359841 .. 41361002

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCAGGTTGGGCTCACTGGTGTGCTAGAAACTGAAGGGGTCACATACACCCACAAAGACCAAATAAAAGAGGAAGTTTATGGTACACTAGTTACAGATAACACAATTGCTGTGAACCATGACCACTTCTTGACTTACTATCTTGACCTTGATGTGGACGGTGAAGCCAACTCTTTTGTTAAGAACAATTTGGTGACCAAACGTGTGACAGACCGGAGTATCCCAAGAAAGAGTTATTGGACAGTGGTAAGCGAGACTGCTAAGACGGAATCAGATGCAAAAATTCATTTGGGTTTGAAGCAGTCTGAACTAGTCGTGGTGAACCCTAATAAAAGGACCAAACCTGGGAATTCTGTCGGTTATCGCTTGATTCCAGGATCAGTTGCAGCACCCCTTCTGTTAGAGGATGATTACCCTCAAATTCGGGGTGCTTTTACTAAGTACAATGTGTGGGTTACACCGTATAACAAATCTGAAAAATGGGCAGGAGGGAAATATGTTGACCAAAGCCGAGGAGGTGATACCTTAGCAGTTTGGAGTCTCAGGGATAGGGAAATTGAGAACAAAGACATAGTGCTGTGGTACACAATTGGCTTTCACCATGCTCCTTGCCAGGAAGACTTTCCAATGATGCCAACATTAAGTGGTGGATTTGAGCTCCGGCCAACCAATTTCTTTGAGCGCAGTCCGGTGCTGAAAGTTAGAATAACACCACCTCCTAAGCATGCGGACTCCCCTAATTGCACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

250

Amino Acids

28.22

Weight (kDa)

6.66

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	2 - 232	5.8e-70	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	3 cut(s)	282, 349, 420
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	85, 443, 584
AfiI	CCNNNNNNNGG	2 cut(s)	154, 345
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	2 cut(s)	88, 310
AjnI	CCWGG	3 cut(s)	343, 373, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	1 cut(s)	658
AluI	AGCT	1 cut(s)	658
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	2 cut(s)	248, 545
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	3 cut(s)	282, 349, 420
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	5 cut(s)	173, 205, 331, 530, 590
AvaII	GGWCC	1 cut(s)	336
BaeI	ACNNNNGTAYC	4 cut(s)	75, 108, 202, 235
BanII	GRGCYC	2 cut(s)	15, 660
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	398
BciT130I	CCWGG	3 cut(s)	345, 375, 614
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	248, 545
BcuI	ACTAGT	2 cut(s)	88, 310
BfaI	CTAG	3 cut(s)	26, 89, 311
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	345, 375, 614
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	345, 375, 614
BmsI	GCATC	2 cut(s)	265, 621
BpiI	GAAGAC	1 cut(s)	624
Bpu10I	CCTNAGC	2 cut(s)	526, 720
BsaJI	CCNNGG	2 cut(s)	344, 511
BsaWI	WCCGGW	2 cut(s)	213, 688
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 345
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	3 cut(s)	345, 375, 614
BseDI	CCNNGG	2 cut(s)	344, 511
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	154, 345
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	528
BseXI	GCAGC	1 cut(s)	398
BshFI	GGCC	1 cut(s)	664
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	3 cut(s)	214, 661, 689
BslI	CCNNNNNNNGG	2 cut(s)	154, 345
BsmAI	GTCTC	2 cut(s)	248, 545
BsnI	GGCC	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	15, 660
Bsp143I	GATC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	1 cut(s)	555
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	344, 511
BssMI	GATC	1 cut(s)	377
Bst2UI	CCWGG	3 cut(s)	345, 375, 614
Bst4CI	ACNGT	3 cut(s)	161, 244, 462
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	5 cut(s)	261, 438, 526, 542, 720
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	2 cut(s)	248, 545
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	3 cut(s)	345, 375, 614
BstNSI	RCATGY	1 cut(s)	728
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	343, 373, 612
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	15, 249
Cac8I	GCNNGC	1 cut(s)	726
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	84, 442, 583
CviAII	CATG	3 cut(s)	119, 602, 725
CviJI	RGCY	6 cut(s)	13, 167, 510, 594, 658, 664
CviKI_1	RGCY	6 cut(s)	13, 167, 510, 594, 658, 664
CviQI	GTAC	3 cut(s)	84, 442, 583
DdeI	CTNAG	5 cut(s)	261, 438, 526, 542, 720
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	662
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	2 cut(s)	15, 660
Eco47I	GGWCC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	343, 373, 612
EcoT38I	GRGCYC	2 cut(s)	15, 660
FaeI	CATG	3 cut(s)	122, 605, 728
FaiI	YATR	8 cut(s)	46, 81, 120, 465, 498, 572, 603, 726
FatI	CATG	3 cut(s)	118, 601, 724
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	2 cut(s)	15, 660
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	3 cut(s)	26, 89, 311
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	664
HapII	CCGG	3 cut(s)	214, 661, 689
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	3 cut(s)	122, 605, 728
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	4 cut(s)	269, 370, 538, 731
HpaII	CCGG	3 cut(s)	214, 661, 689
HphI	GGTGA	5 cut(s)	173, 205, 331, 530, 590
Hpy166II	GTNNAC	6 cut(s)	86, 115, 157, 322, 502, 585
Hpy188I	TCNGA	3 cut(s)	274, 307, 475
Hpy188III	TCNNGA	2 cut(s)	130, 143
Hpy8I	GTNNAC	6 cut(s)	86, 115, 157, 322, 502, 585
HpyAV	CCTTC	2 cut(s)	29, 404
HpyCH4III	ACNGT	3 cut(s)	161, 244, 462
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	4, 278, 386, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	5 cut(s)	261, 438, 526, 542, 720
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	122, 605, 728
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	2 cut(s)	610, 663
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	2 cut(s)	265, 621
MaeI	CTAG	3 cut(s)	26, 89, 311
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	5 cut(s)	40, 91, 193, 205, 454
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	1 cut(s)	629
MfeI	CAATTG	2 cut(s)	105, 588
MhlI	GDGCHC	2 cut(s)	15, 660
MluCI	AATT	9 cut(s)	105, 187, 282, 349, 420, 555, 588, 670, 739
MlyI	GAGTC	2 cut(s)	547, 725
MnlI	CCTC	7 cut(s)	64, 397, 426, 482, 506, 509, 726
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	2 cut(s)	180, 641
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	3 cut(s)	214, 661, 689
MspR9I	CCNGG	3 cut(s)	345, 375, 614
MunI	CAATTG	2 cut(s)	105, 588
MvaI	CCWGG	3 cut(s)	345, 375, 614
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	122, 605, 728
NmeAIII	GCCGAG	1 cut(s)	536
NmuCI	GTSAC	3 cut(s)	40, 193, 205
NspI	RCATGY	1 cut(s)	728
OliI	CACNNNNGTG	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	269, 370
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	546, 725
PpsI	GAGTC	2 cut(s)	546, 725
Psp124BI	GAGCTC	1 cut(s)	660
Psp6I	CCWGG	3 cut(s)	343, 373, 612
PspEI	GGTNACC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	343, 373, 612
PspPI	GGNCC	1 cut(s)	336
RsaI	GTAC	3 cut(s)	85, 443, 584
RsaNI	GTAC	3 cut(s)	84, 442, 583
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	2 cut(s)	180, 641
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	377
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	2 cut(s)	547, 725
ScrFI	CCNGG	3 cut(s)	345, 375, 614
SduI	GDGCHC	2 cut(s)	15, 660
SetI	ASST	8 cut(s)	9, 150, 205, 346, 520, 527, 660, 718
SfaNI	GCATC	2 cut(s)	265, 621
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	20
SpeI	ACTAGT	2 cut(s)	88, 310
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	9 cut(s)	105, 187, 282, 349, 420, 555, 588, 670, 739
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	3 cut(s)	26, 89, 311
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	343, 373, 612
TaaI	ACNGT	3 cut(s)	161, 244, 462
TaiI	ACGT	1 cut(s)	205
TasI	AATT	9 cut(s)	105, 187, 282, 349, 420, 555, 588, 670, 739
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	269, 370
Tru1I	TTAA	2 cut(s)	180, 641
Tru9I	TTAA	2 cut(s)	180, 641
TscAI	CASTG	2 cut(s)	22, 249
TseFI	GTSAC	3 cut(s)	40, 193, 205
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	3 cut(s)	40, 193, 205
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	22, 249
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	3 cut(s)	282, 349, 420
XceI	RCATGY	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	3 cut(s)	26, 89, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.