Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

41341923 .. 41343315

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACTATATTATTGATTGGGAATTCAAACCAAGTGGGGTGCTGGAAATTGCAGCGGCTAAATATTACCCACATAAACCAAATAAAGGAGGAAGTTTATGGTACGTTGGTGGCAGATAACTCCATTGCAGTAAACCATGATCACTTCTTGACCTACCATATTGACCTTGATGTGGATGGTGAAGCCAACTCCTTTGTGAAGAACAATTTCGTGACAAAACGAGTTACAGACCCAAACATACCAAGGAAGAGTTACTGGAATGTTGTAAGCGAAACCGCTAGGACGGAAGCGGATGCACGGATTCACCTAGGCTTGAAGCCAGCCGACCTGGTTGTGGTAAATCCTAATAAGAAGACCAAACCCGGGAACCCTATTGGTTACCGTTTGATTCCAGGGTCATTTGTAAATCCCCTTCTGGTGGAGGATGACTACCCACAAATTCGTGGTGCTTTCACCAACTATAATGTTTGGAATAGGAAGATTGAGAATAAGGACATAGTGTTGTGGTACACCGTTGGGTTTCACCACAATCCTTGCCAAGAGGACTTTCCGATGATGCCAACATTGAGCGGTGGATTTGAGCTCCGGCCAGCTAATTTCTTTGAGAGCAGTCCAGTTCTTAAAGTTAGAACAACACCTCCTCCTAAGCATGTACCATCTCCTAATTGCACCAAGCAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

227

Amino Acids

25.73

Weight (kDa)

8.38

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	23 - 157	3.7e-29	Copper amine oxidase, enzyme domain
Cu_amine_oxid	PF01179	158 - 207	1.8e-18	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	570
AciI	CCGC	4 cut(s)	55, 276, 290, 570
AcoI	YGGCCR	1 cut(s)	587
AcsI	RAATTY	2 cut(s)	22, 438
AfaI	GTAC	3 cut(s)	103, 509, 654
AfiI	CCNNNNNNNGG	5 cut(s)	85, 172, 334, 363, 418
AgsI	TTSAA	2 cut(s)	27, 316
AjnI	CCWGG	2 cut(s)	327, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AloI	GAACNNNNNNTCC	2 cut(s)	622, 654
AluBI	AGCT	2 cut(s)	583, 593
AluI	AGCT	2 cut(s)	583, 593
Alw21I	GWGCWC	1 cut(s)	585
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	587
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	22, 438
Asp700I	GAANNNNTTC	1 cut(s)	206
AspA2I	CCTAGG	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	363, 364
AsuHPI	GGTGA	4 cut(s)	191, 296, 445, 515
AvaI	CYCGRG	1 cut(s)	362
AvrII	CCTAGG	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BanII	GRGCYC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	170, 664
BciT130I	CCWGG	2 cut(s)	329, 393
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	363, 364
BfaI	CTAG	3 cut(s)	279, 308, 682
BisI	GCNGC	2 cut(s)	53, 56
BlnI	CCTAGG	1 cut(s)	307
BlsI	GCNGC	2 cut(s)	54, 57
Bme1390I	CCNGG	4 cut(s)	329, 363, 364, 393
BmeT110I	CYCGRG	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	4 cut(s)	329, 363, 364, 393
BmsI	GCATC	2 cut(s)	283, 546
BpiI	GAAGAC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	645
BpuMI	CCSGG	2 cut(s)	363, 364
BsaJI	CCNNGG	4 cut(s)	242, 307, 362, 392
BsaXI	ACNNNNNCTCC	4 cut(s)	622, 625, 652, 655
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 172, 334, 363, 418
Bse1I	ACTGG	2 cut(s)	260, 614
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	329, 393
BseDI	CCNNGG	4 cut(s)	242, 307, 362, 392
BseGI	GGATG	3 cut(s)	181, 298, 430
BseLI	CCNNNNNNNGG	5 cut(s)	85, 172, 334, 363, 418
BseMI	GCAATG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	260, 614
BseRI	GAGGAG	1 cut(s)	630
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	2 cut(s)	363, 586
BslI	CCNNNNNNNGG	5 cut(s)	85, 172, 334, 363, 418
BsnI	GGCC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	4 cut(s)	55, 276, 290, 570
BspANI	GGCC	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	260, 614
BssECI	CCNNGG	4 cut(s)	242, 307, 362, 392
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	2 cut(s)	242, 307
Bst2UI	CCWGG	2 cut(s)	329, 393
Bst4CI	ACNGT	2 cut(s)	383, 514
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	321, 591
BstDEI	CTNAG	1 cut(s)	645
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	181, 298, 430
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	329, 393
BstNSI	RCATGY	1 cut(s)	653
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	327, 361, 362, 391
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	181, 298, 430
Cac8I	GCNNGC	2 cut(s)	321, 591
Cfr9I	CCCGGG	1 cut(s)	362
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	102, 508, 653
CspCI	CAANNNNNGTGG	4 cut(s)	15, 50, 515, 550
CviAII	CATG	2 cut(s)	137, 650
CviJI	RGCY	8 cut(s)	58, 185, 312, 319, 323, 583, 589, 593
CviKI_1	RGCY	8 cut(s)	58, 185, 312, 319, 323, 583, 589, 593
CviQI	GTAC	3 cut(s)	102, 508, 653
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	587
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	242, 307
Eco24I	GRGCYC	1 cut(s)	585
Eco53kI	GAGCTC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	327, 391
EcoT14I	CCWWGG	2 cut(s)	242, 307
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	2 cut(s)	242, 307
FaeI	CATG	2 cut(s)	140, 653
FaiI	YATR	9 cut(s)	8, 74, 99, 138, 159, 239, 462, 497, 651
FatI	CATG	2 cut(s)	136, 649
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	53, 56
FokI	GGATG	3 cut(s)	188, 305, 437
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	53, 56
FspBI	CTAG	3 cut(s)	279, 308, 682
GluI	GCNGC	2 cut(s)	53, 56
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	2 cut(s)	363, 586
Hin1II	CATG	2 cut(s)	140, 653
HinfI	GANTC	2 cut(s)	301, 388
HpaII	CCGG	2 cut(s)	363, 586
HphI	GGTGA	4 cut(s)	191, 296, 445, 515
Hpy166II	GTNNAC	2 cut(s)	133, 510
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	2 cut(s)	148, 211
Hpy8I	GTNNAC	2 cut(s)	133, 510
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	383, 514
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	52, 128, 296, 669
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	140, 653
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	283, 546
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	3 cut(s)	279, 308, 682
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	4 cut(s)	211, 223, 251, 377
MalI	GATC	1 cut(s)	141
MbiI	CCGCTC	1 cut(s)	570
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	211, 259, 364, 490
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	6 cut(s)	22, 47, 205, 438, 595, 664
MnlI	CCTC	5 cut(s)	82, 415, 535, 648, 651
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	363, 586
MspR9I	CCNGG	4 cut(s)	329, 363, 364, 393
MvaI	CCWGG	2 cut(s)	329, 393
NciI	CCSGG	2 cut(s)	363, 364
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	140, 653
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	301, 388
PkrI	GCNGC	2 cut(s)	54, 57
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	327, 391
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	327, 391
PspN4I	GGNNCC	1 cut(s)	368
RsaI	GTAC	3 cut(s)	103, 509, 654
RsaNI	GTAC	3 cut(s)	102, 508, 653
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	2 cut(s)	53, 56
Sau3AI	GATC	1 cut(s)	139
ScrFI	CCNGG	4 cut(s)	329, 363, 364, 393
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	9 cut(s)	107, 155, 168, 309, 330, 585, 595, 640, 683
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	283, 546
SmaI	CCCGGG	1 cut(s)	364
Sse9I	AATT	6 cut(s)	22, 47, 205, 438, 595, 664
SsiI	CCGC	4 cut(s)	55, 276, 290, 570
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	3 cut(s)	279, 308, 682
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	4 cut(s)	327, 361, 362, 391
StyI	CCWWGG	2 cut(s)	242, 307
TaaI	ACNGT	2 cut(s)	383, 514
TaiI	ACGT	1 cut(s)	107
TasI	AATT	6 cut(s)	22, 47, 205, 438, 595, 664
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	301, 388
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	2 cut(s)	299, 313
TspMI	CCCGGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	22, 438
XceI	RCATGY	1 cut(s)	653
XmaI	CCCGGG	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	3 cut(s)	279, 308, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.