Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

55828700 .. 55829125

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG415300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCCACCTCATATTACAACCTCTTTTCTCTCTCTCAGCAACCGCGTCGCCAACGTCGGCCTCCGGAACCTCGACCTCCTCTTGAGCCTTAAGAACCGCGTCAAATACACCGTCGTCGAGGCCCTCAACGGCGACTACAGCCTCTCGAGATCGGGATCTGCTGCCTTGATCCGATGTCGGAATCGCTGCCGCAACGGCGAGCGCCTCGACACCTACGTCGGCTGCAACGGCGCCGTTTGGTGCTGCGACGTCGGGCTTGGTTCATCAGCGAGCCCACTTGAGGCAATTTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

98

Amino Acids

10.63

Weight (kDa)

9.01

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	2 cut(s)	45, 99
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	3 cut(s)	43, 97, 190
AclWI	GGATC	2 cut(s)	163, 163
AcyI	GRCGYC	2 cut(s)	231, 249
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	89
AlwI	GGATC	2 cut(s)	163, 163
Ama87I	CYCGRG	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	2 cut(s)	58, 120
ApeKI	GCWGC	4 cut(s)	161, 186, 222, 243
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AspLEI	GCGC	2 cut(s)	204, 233
AspS9I	GGNCC	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	275
BbvI	GCAGC	4 cut(s)	148, 173, 209, 230
BceAI	ACGGC	4 cut(s)	145, 211, 218, 244
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	2 cut(s)	205, 234
BfrI	CTTAAG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	5 cut(s)	162, 187, 190, 223, 244
BlsI	GCNGC	5 cut(s)	163, 188, 191, 224, 245
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	68, 232
BpuEI	CTTGAG	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	154
BsaHI	GRCGYC	2 cut(s)	231, 249
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	154
BseAI	TCCGGA	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	148, 173, 209, 230
Bsh1236I	CGCG	2 cut(s)	45, 99
BshFI	GGCC	2 cut(s)	60, 122
BshNI	GGYRCC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	280
BsnI	GGCC	2 cut(s)	60, 122
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	149, 155, 168
BspACI	CCGC	3 cut(s)	43, 97, 190
BspANI	GGCC	2 cut(s)	60, 122
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	63
BspFNI	CGCG	2 cut(s)	45, 99
BspLI	GGNNCC	2 cut(s)	68, 232
BspPI	GGATC	2 cut(s)	163, 163
BspT107I	GGYRCC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	89
BssMI	GATC	3 cut(s)	149, 155, 168
BssNI	GRCGYC	2 cut(s)	231, 249
Bst4CI	ACNGT	1 cut(s)	112
BstACI	GRCGYC	2 cut(s)	231, 249
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	200, 271
BstDEI	CTNAG	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	45, 99
BstH2I	RGCGCY	2 cut(s)	205, 234
BstHHI	GCGC	2 cut(s)	204, 233
BstKTI	GATC	3 cut(s)	152, 158, 171
BstMBI	GATC	3 cut(s)	149, 155, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 195, 228
BstSFI	CTRYAG	1 cut(s)	136
BstUI	CGCG	2 cut(s)	45, 99
BstV1I	GCAGC	4 cut(s)	148, 173, 209, 230
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	60, 122
Cac8I	GCNNGC	2 cut(s)	200, 271
CfoI	GCGC	2 cut(s)	204, 233
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	2 cut(s)	34, 88
CviJI	RGCY	7 cut(s)	60, 87, 122, 141, 222, 256, 273
CviKI_1	RGCY	7 cut(s)	60, 87, 122, 141, 222, 256, 273
DdeI	CTNAG	1 cut(s)	35
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	3 cut(s)	151, 157, 170
DpnII	GATC	3 cut(s)	149, 155, 168
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	275
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaiI	YATR	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	162, 187, 190, 223, 244
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	5 cut(s)	162, 187, 190, 223, 244
GlaI	GCGC	2 cut(s)	203, 232
GluI	GCNGC	5 cut(s)	162, 187, 190, 223, 244
HaeII	RGCGCY	2 cut(s)	205, 234
HaeIII	GGCC	2 cut(s)	60, 122
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	2 cut(s)	34, 88
HhaI	GCGC	2 cut(s)	204, 233
Hin1I	GRCGYC	2 cut(s)	231, 249
Hin6I	GCGC	2 cut(s)	202, 231
HinP1I	GCGC	2 cut(s)	202, 231
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	173, 180
Hpy188III	TCNNGA	5 cut(s)	64, 82, 145, 147, 153
Hpy99I	CGWCG	7 cut(s)	50, 59, 116, 119, 221, 251, 254
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	3 cut(s)	54, 216, 249
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 195, 228
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	54, 216, 249
Hsp92I	GRCGYC	2 cut(s)	231, 249
HspAI	GCGC	2 cut(s)	202, 231
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	149, 155, 168
LpnPI	CCDG	1 cut(s)	77
Lsp1109I	GCAGC	4 cut(s)	148, 173, 209, 230
MaeII	ACGT	3 cut(s)	54, 216, 249
MalI	GATC	3 cut(s)	151, 157, 170
MboI	GATC	3 cut(s)	149, 155, 168
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	1 cut(s)	285
Mly113I	GGCGCC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	63
MseI	TTAA	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	45, 99
MwoI	GCNNNNNNNGC	3 cut(s)	138, 195, 228
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	3 cut(s)	149, 155, 168
NlaIV	GGNNCC	2 cut(s)	68, 232
PaeR7I	CTCGAG	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	163, 188, 191, 224, 245
PluTI	GGCGCC	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	68, 232
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	5 cut(s)	162, 187, 190, 223, 244
Sau3AI	GATC	3 cut(s)	149, 155, 168
Sau96I	GGNCC	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	8 cut(s)	10, 23, 57, 72, 78, 215, 219, 252
SfcI	CTRYAG	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	145
SmlI	CTYRAG	4 cut(s)	82, 89, 145, 278
SmoI	CTYRAG	4 cut(s)	82, 89, 145, 278
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	3 cut(s)	43, 97, 190
SspDI	GGCGCC	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	3 cut(s)	57, 219, 252
TaqI	TCGA	4 cut(s)	72, 117, 146, 207
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	4 cut(s)	161, 186, 222, 243
TspDTI	ATGAA	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	145
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.