Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

12111369 .. 12112214

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGGCTTCAACTATGAAACTAACGCTCTTCTTACTCCCTTTGTTCTTCACCTTCTCCCTAATAATCTCAAGCCACCACCCACTAGATCCCTTAACCCCATCTGAATTCAAAAAGGTCCGAACCATAGTGAAAAAATCATACCCATCTGGCCTCAAACACAACCTAACCTTTCAATACATAGGTTTAGACGAGCCAGACAAACCAGTCCTCCAATCATGGCTTTCATCAAAAACCAAATCAAATCCCCCTCCTCGACGAGCCTTTGTCATCGCACGCCTCCACAAAGAAACCCACGAGCTCGTGGTCGATTTATCCAATCGTTACATAATTTCCGATAAAGTTTACGGTGGAAATGATGGTTACCCTATGCTCACCAACGACGAACAAACAGCGGCAAGTGCACTTCCGTTTTCCTATCAACCATTTCTCGGTTCGGTTAAGAAGAGGGAGCTTAACTTGTCCGACGTTGTTTGTTCCACGTATACAGTTGGGTGGTTTGGGGAGAAGCATAGTAGAAGAGCTATCAAAATTCTGTGTTTTTATAAAGAAGGCACGGCTAATCTGTACATGAGGCCCTTGGAGGGAGTATCTTTGTTGGTTGATCTTGATGAAATGAAAATAGTGGAGTATTATGACAGGTCTAGGCTTCCGATGCCGAAGGCTGAAGGAACGGAGTATCGGCTGTCAAAGCAGAAGCCGCCATTCGGTCCGCCGCTGAATGGTTTCGTTATCGAGCAACCGAACGGACCCGGGTTCAAAATCGACGGGCACAAAATAAGGTTAGCTTTACGTGAATTTACTTTAAGAGAAATGTGTGATCACAAGAAATTTCGCAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

282

Amino Acids

32.13

Weight (kDa)

9.5

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	27 - 114	3.5e-19	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	123 - 217	3.8e-22	Copper amine oxidase, N3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AasI	GACNNNNNNGTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	5 cut(s)	5, 395, 701, 713, 716
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	4 cut(s)	107, 531, 797, 830
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
AgsI	TTSAA	4 cut(s)	12, 112, 176, 760
AluBI	AGCT	4 cut(s)	301, 454, 524, 788
AluI	AGCT	4 cut(s)	301, 454, 524, 788
Alw21I	GWGCWC	2 cut(s)	303, 406
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	151, 575
ApaLI	GTGCAC	1 cut(s)	402
ApoI	RAATTY	4 cut(s)	107, 531, 797, 830
Asp700I	GAANNNNTTC	1 cut(s)	725
AspS9I	GGNCC	4 cut(s)	118, 576, 710, 749
AsuC2I	CCSGG	2 cut(s)	753, 754
AsuHPI	GGTGA	2 cut(s)	43, 367
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	118, 710, 749
BaeGI	GKGCMC	2 cut(s)	406, 774
BanII	GRGCYC	1 cut(s)	303
BauI	CACGAG	2 cut(s)	296, 302
Bbv12I	GWGCWC	2 cut(s)	303, 406
BccI	CCATC	3 cut(s)	109, 154, 353
BceAI	ACGGC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	2 cut(s)	753, 754
BfaI	CTAG	2 cut(s)	86, 645
BisI	GCNGC	4 cut(s)	6, 396, 701, 716
BlsI	GCNGC	4 cut(s)	7, 397, 702, 717
Bme1390I	CCNGG	2 cut(s)	753, 754
Bme18I	GGWCC	3 cut(s)	118, 710, 749
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	4 cut(s)	118, 576, 710, 749
BmiI	GGNNCC	1 cut(s)	751
BmrFI	CCNGG	2 cut(s)	753, 754
BmsI	GCATC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	753, 754
BsaAI	YACGTR	2 cut(s)	483, 794
BsaJI	CCNNGG	2 cut(s)	579, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	579, 752
BseLI	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	2 cut(s)	406, 774
BshFI	GGCC	2 cut(s)	153, 577
BsiHKAI	GWGCWC	2 cut(s)	303, 406
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	753
BslI	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
BsnI	GGCC	2 cut(s)	153, 577
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	3 cut(s)	303, 406, 774
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	88, 604, 820
BspACI	CCGC	5 cut(s)	5, 395, 701, 713, 716
BspANI	GGCC	2 cut(s)	153, 577
BspLI	GGNNCC	1 cut(s)	751
BspPI	GGATC	1 cut(s)	83
BspQI	GCTCTTC	2 cut(s)	35, 514
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	579, 752
BssMI	GATC	3 cut(s)	88, 604, 820
BssNAI	GTATAC	1 cut(s)	486
BssSI	CACGAG	2 cut(s)	296, 302
BssT1I	CCWWGG	1 cut(s)	579
Bst1107I	GTATAC	1 cut(s)	486
Bst2BI	CACGAG	2 cut(s)	296, 302
Bst4CI	ACNGT	2 cut(s)	350, 490
Bst6I	CTCTTC	3 cut(s)	35, 440, 514
BstAUI	TGTACA	1 cut(s)	567
BstBAI	YACGTR	2 cut(s)	483, 794
BstC8I	GCNNGC	1 cut(s)	277
BstEII	GGTNACC	1 cut(s)	362
BstKTI	GATC	3 cut(s)	91, 607, 823
BstMBI	GATC	3 cut(s)	88, 604, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 655, 691, 700
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	751, 752
BstSLI	GKGCMC	2 cut(s)	406, 774
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	153, 577
BtgZI	GCGATG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	277
Cfr13I	GGNCC	4 cut(s)	118, 576, 710, 749
Cfr9I	CCCGGG	1 cut(s)	752
CpoI	CGGWCCG	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	568
CspI	CGGWCCG	1 cut(s)	710
CviAII	CATG	2 cut(s)	219, 571
CviQI	GTAC	1 cut(s)	568
DpnI	GATC	3 cut(s)	90, 606, 822
DpnII	GATC	3 cut(s)	88, 604, 820
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	3 cut(s)	35, 440, 514
EarI	CTCTTC	3 cut(s)	35, 440, 514
EciI	GGCGGA	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	118, 710, 749
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	2 cut(s)	222, 574
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FatI	CATG	2 cut(s)	218, 570
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	4 cut(s)	6, 396, 701, 716
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	6, 396, 701, 716
FspBI	CTAG	2 cut(s)	86, 645
GluI	GCNGC	4 cut(s)	6, 396, 701, 716
HaeIII	GGCC	2 cut(s)	153, 577
HapII	CCGG	1 cut(s)	753
Hin1II	CATG	2 cut(s)	222, 574
HpaII	CCGG	1 cut(s)	753
HphI	GGTGA	2 cut(s)	43, 367
Hpy166II	GTNNAC	3 cut(s)	346, 404, 486
Hpy188I	TCNGA	5 cut(s)	106, 122, 337, 466, 654
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	3 cut(s)	346, 404, 486
Hpy99I	CGWCG	4 cut(s)	261, 386, 470, 770
HpyAV	CCTTC	4 cut(s)	64, 545, 655, 662
HpyCH4III	ACNGT	2 cut(s)	350, 490
HpyCH4IV	ACGT	3 cut(s)	468, 482, 793
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 655, 691, 700
HpySE526I	ACGT	3 cut(s)	468, 482, 793
Hsp92II	CATG	2 cut(s)	222, 574
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	3 cut(s)	88, 604, 820
LguI	GCTCTTC	2 cut(s)	35, 514
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	5 cut(s)	135, 210, 219, 625, 766
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	2 cut(s)	86, 645
MaeII	ACGT	3 cut(s)	468, 482, 793
MaeIII	GTNAC	2 cut(s)	323, 362
MalI	GATC	3 cut(s)	90, 606, 822
MboI	GATC	3 cut(s)	88, 604, 820
MboII	GAAGA	4 cut(s)	22, 40, 457, 531
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	303, 406, 774
MluCI	AATT	5 cut(s)	107, 330, 531, 797, 830
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	9 cut(s)	164, 221, 261, 264, 290, 441, 567, 577, 833
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	4 cut(s)	95, 441, 456, 806
MspA1I	CMGCKG	2 cut(s)	395, 718
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	2 cut(s)	753, 754
MwoI	GCNNNNNNNGC	4 cut(s)	401, 655, 691, 700
NciI	CCSGG	2 cut(s)	753, 754
NdeII	GATC	3 cut(s)	88, 604, 820
NlaIII	CATG	2 cut(s)	222, 574
NlaIV	GGNNCC	1 cut(s)	751
PciSI	GCTCTTC	2 cut(s)	35, 514
PdmI	GAANNNNTTC	1 cut(s)	725
PkrI	GCNGC	4 cut(s)	7, 397, 702, 717
Ppu21I	YACGTR	2 cut(s)	483, 794
PsiI	TTATAA	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	751
PspPI	GGNCC	4 cut(s)	118, 576, 710, 749
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
Rsr2I	CGGWCCG	1 cut(s)	710
RsrII	CGGWCCG	1 cut(s)	710
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	2 cut(s)	35, 514
SaqAI	TTAA	4 cut(s)	95, 441, 456, 806
SatI	GCNGC	4 cut(s)	6, 396, 701, 716
Sau3AI	GATC	3 cut(s)	88, 604, 820
Sau96I	GGNCC	4 cut(s)	118, 576, 710, 749
ScrFI	CCNGG	2 cut(s)	753, 754
SduI	GDGCHC	3 cut(s)	303, 406, 774
SfaNI	GCATC	1 cut(s)	645
SinI	GGWCC	3 cut(s)	118, 710, 749
SmaI	CCCGGG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	5 cut(s)	107, 330, 531, 797, 830
SsiI	CCGC	5 cut(s)	5, 395, 701, 713, 716
SspMI	CTAG	2 cut(s)	86, 645
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	751, 752
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	350, 490
TaiI	ACGT	3 cut(s)	471, 485, 796
TaqI	TCGA	4 cut(s)	256, 309, 735, 765
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	5 cut(s)	107, 330, 531, 797, 830
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	4 cut(s)	8, 398, 703, 718
Tru1I	TTAA	4 cut(s)	95, 441, 456, 806
Tru9I	TTAA	4 cut(s)	95, 441, 456, 806
TspDTI	ATGAA	4 cut(s)	32, 216, 627, 632
TspGWI	ACGGA	3 cut(s)	399, 689, 762
TspMI	CCCGGG	1 cut(s)	752
VneI	GTGCAC	1 cut(s)	402
VpaK11BI	GGWCC	3 cut(s)	118, 710, 749
XapI	RAATTY	4 cut(s)	107, 531, 797, 830
XmaI	CCCGGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	86, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.