Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

41348434 .. 41352430

Gene Structure 3997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCACCAAGTCTCTTACTACTCTTCTCCGCCTTCATCATCGTCTTCTCACCATCCTTATGCTTGAAGCAACATCCCCTAGACTCTCTAACCCCATCCGAGTTCACCCAGATCAAAACCATACTTGCAAAAACATACCCAGCACACAACATAAGCTTCCAATACGTTGGCCTAGACGAACCCAAAAAATCCACCGTCCTCTTATGGAATTCGAAATCCAACACCAAATCCCTACCTTCTCGCCGTGCCTTGGTCGTTACACGCATTAACAGACAGACTCACAAGTCCATAGTCGATTTGTCAACCAGTTCTGTGGTCACGGGACTACCCCAACGACTGCACCCCGCGGTGCTGGCACGCCTGCGCAACCACTCGCCCAAAAGAGACTGTTTGCACACCAGCTGGTTTTGGAGCCAAACAGAGCGAACAGCCGTTAGCGAATTGCCGTTTACATACAAACCCTTTCTCAAATCCATGAAAAATAGAGGGCTTAACATATCGCAAGTTGTTTGTACCACTTTTTCGGTTGGTTGGTTTGGAGAGAACAAGAGTAGACTGTCGAAGCTGAATTGTTTTTATACAGATGGGACAGTGAACTTGTATGTGACGCCAGTGGAGGGAATTACAGTGGTGGTTGATCTTGAGGAGGTTTTTCCGGTTTTTCTTGCTGGAACTCATATATGGGCCAACTGGGTCTTCCATCTGGGATTTGGTGTTCGAACTGGTGTGGTTATATCCCTAGCATCAATCTACGACCTTGACAAGCACAAATACAGAAGGGTTTTCCAACCGAGGACTGGTACTACAAATTCCTTCTTCGATTGTGGAGAATTCGGGTTCGGCCTCTCAACAGTCTCACTCGAGCCACTGACCGATTTCCCAAGCAATGCCAAGTTCATAGATGGTTACTATGCTGCCGGAGATGGCACGCCAGTGCAGATATCGAATGCCATTTGCATCTTTGAACGACATGCAGGCAACATCTTGTGGCGTCACACAGAAGTTACTATCCCAGATGAAGTGTTGGGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

344

Amino Acids

38.63

Weight (kDa)

9.16

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	25 - 106	3.9e-16	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	141 - 219	2.2e-17	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	228 - 336	6.3e-22	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc16I	TGCGCA	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	553
AccII	CGCG	1 cut(s)	347
AciI	CCGC	3 cut(s)	30, 345, 347
AcsI	RAATTY	3 cut(s)	208, 808, 830
AcyI	GRCGYC	2 cut(s)	608, 991
AfaI	GTAC	3 cut(s)	514, 802, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	250, 617, 797
AgsI	TTSAA	2 cut(s)	67, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AleI	CACNNNNGTG	1 cut(s)	932
AloI	GAACNNNNNNTCC	2 cut(s)	699, 731
AluBI	AGCT	3 cut(s)	156, 402, 565
AluI	AGCT	3 cut(s)	156, 402, 565
Alw26I	GTCTC	3 cut(s)	17, 378, 859
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	3 cut(s)	169, 684, 841
ApeKI	GCWGC	1 cut(s)	914
ApoI	RAATTY	3 cut(s)	208, 808, 830
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	42, 97
AsuII	TTCGAA	2 cut(s)	212, 718
AvaI	CYCGRG	1 cut(s)	860
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	37, 688
BbvI	GCAGC	1 cut(s)	901
BccI	CCATC	6 cut(s)	61, 103, 578, 708, 896, 917
BceAI	ACGGC	3 cut(s)	228, 416, 430
BcoDI	GTCTC	3 cut(s)	17, 378, 859
BfaI	CTAG	3 cut(s)	80, 173, 740
BisI	GCNGC	1 cut(s)	915
BlsI	GCNGC	1 cut(s)	916
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	6, 413
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	2 cut(s)	752, 966
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	2 cut(s)	37, 688
Bpu14I	TTCGAA	2 cut(s)	212, 718
BpuEI	CTTGAG	1 cut(s)	662
BsaHI	GRCGYC	2 cut(s)	608, 991
BsaJI	CCNNGG	3 cut(s)	249, 345, 791
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 617, 797
Bse1I	ACTGG	6 cut(s)	306, 611, 695, 727, 802, 932
Bse3DI	GCAATG	1 cut(s)	892
BseDI	CCNNGG	3 cut(s)	249, 345, 791
BseGI	GGATG	3 cut(s)	53, 73, 95
BseLI	CCNNNNNNNGG	3 cut(s)	250, 617, 797
BseMI	GCAATG	1 cut(s)	892
BseNI	ACTGG	6 cut(s)	306, 611, 695, 727, 802, 932
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	901
BseYI	CCCAGC	1 cut(s)	139
BsgI	GTGCAG	2 cut(s)	323, 956
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	3 cut(s)	171, 686, 843
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	2 cut(s)	656, 918
BslFI	GGGAC	2 cut(s)	336, 601
BslI	CCNNNNNNNGG	3 cut(s)	250, 617, 797
BsmAI	GTCTC	3 cut(s)	17, 378, 859
BsmFI	GGGAC	2 cut(s)	336, 601
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	3 cut(s)	171, 686, 843
BsoBI	CYCGRG	1 cut(s)	860
Bsp119I	TTCGAA	2 cut(s)	212, 718
Bsp143I	GATC	2 cut(s)	111, 637
BspACI	CCGC	3 cut(s)	30, 345, 347
BspANI	GGCC	3 cut(s)	171, 686, 843
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	6, 413
BspT104I	TTCGAA	2 cut(s)	212, 718
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	892
BsrI	ACTGG	6 cut(s)	306, 611, 695, 727, 802, 932
BssECI	CCNNGG	3 cut(s)	249, 345, 791
BssMI	GATC	2 cut(s)	111, 637
BssNI	GRCGYC	2 cut(s)	608, 991
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	6 cut(s)	196, 389, 558, 592, 628, 853
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	2 cut(s)	608, 991
BstBI	TTCGAA	2 cut(s)	212, 718
BstC8I	GCNNGC	5 cut(s)	354, 358, 362, 929, 976
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	53, 73, 95
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	114, 640
BstMAI	GTCTC	3 cut(s)	17, 378, 859
BstMBI	GATC	2 cut(s)	111, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	974
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	901
BstV2I	GAAGAC	2 cut(s)	37, 688
BstXI	CCANNNNNNTGG	2 cut(s)	167, 313
BsuRI	GGCC	3 cut(s)	171, 686, 843
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	53, 73, 95
BtsIMutI	CAGTG	5 cut(s)	597, 618, 633, 866, 939
Cac8I	GCNNGC	5 cut(s)	354, 358, 362, 929, 976
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	684
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	2 cut(s)	616, 980
Csp6I	GTAC	3 cut(s)	513, 801, 1030
CviAII	CATG	2 cut(s)	475, 971
CviQI	GTAC	3 cut(s)	513, 801, 1030
DpnI	GATC	2 cut(s)	113, 639
DpnII	GATC	2 cut(s)	111, 637
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	860
EcoRI	GAATTC	2 cut(s)	208, 830
EcoRV	GATATC	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	478, 974
FaqI	GGGAC	2 cut(s)	336, 601
FatI	CATG	2 cut(s)	474, 970
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	915
FokI	GGATG	3 cut(s)	40, 60, 82
Fsp4HI	GCNGC	1 cut(s)	915
FspBI	CTAG	3 cut(s)	80, 173, 740
FspI	TGCGCA	1 cut(s)	365
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	915
GsaI	CCCAGC	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	171, 686, 843
HapII	CCGG	2 cut(s)	656, 918
HgaI	GACGC	2 cut(s)	616, 980
HhaI	GCGC	1 cut(s)	366
Hin1I	GRCGYC	2 cut(s)	608, 991
Hin1II	CATG	2 cut(s)	478, 974
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	83, 277
HpaII	CCGG	2 cut(s)	656, 918
HphI	GGTGA	2 cut(s)	42, 97
Hpy166II	GTNNAC	5 cut(s)	105, 303, 450, 554, 595
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	5 cut(s)	105, 303, 450, 554, 595
HpyAV	CCTTC	4 cut(s)	43, 246, 771, 823
HpyCH4III	ACNGT	6 cut(s)	196, 389, 558, 592, 628, 853
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	128, 340, 394, 937, 957, 974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	2 cut(s)	608, 991
Hsp92II	CATG	2 cut(s)	478, 974
HspAI	GCGC	1 cut(s)	364
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	111, 637
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	901
LweI	GCATC	2 cut(s)	752, 966
MaeI	CTAG	3 cut(s)	80, 173, 740
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	6 cut(s)	256, 316, 604, 905, 992, 1003
MalI	GATC	2 cut(s)	113, 639
MboI	GATC	2 cut(s)	111, 637
MboII	GAAGA	4 cut(s)	16, 37, 688, 808
MluCI	AATT	6 cut(s)	208, 440, 568, 621, 808, 830
MlyI	GAGTC	2 cut(s)	77, 271
MmeI	TCCRAC	2 cut(s)	243, 811
MnlI	CCTC	7 cut(s)	209, 479, 610, 637, 640, 786, 854
MseI	TTAA	2 cut(s)	267, 492
MslI	CAYNNNNRTG	2 cut(s)	58, 932
MspA1I	CMGCKG	2 cut(s)	347, 402
MspI	CCGG	2 cut(s)	656, 918
Mva1269I	GAATGC	1 cut(s)	952
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	2 cut(s)	111, 637
NlaIII	CATG	2 cut(s)	478, 974
NlaIV	GGNNCC	2 cut(s)	6, 413
NmuCI	GTSAC	3 cut(s)	316, 604, 992
NsbI	TGCGCA	1 cut(s)	365
NspI	RCATGY	1 cut(s)	974
NspV	TTCGAA	2 cut(s)	212, 718
OliI	CACNNNNGTG	1 cut(s)	932
PaeR7I	CTCGAG	1 cut(s)	860
PctI	GAATGC	1 cut(s)	952
PkrI	GCNGC	1 cut(s)	916
PleI	GAGTC	2 cut(s)	77, 271
PpsI	GAGTC	2 cut(s)	77, 271
PspFI	CCCAGC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	6, 413
PspPI	GGNCC	1 cut(s)	684
PspXI	VCTCGAGB	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	402
RsaI	GTAC	3 cut(s)	514, 802, 1031
RsaNI	GTAC	3 cut(s)	513, 801, 1030
RseI	CAYNNNNRTG	2 cut(s)	58, 932
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	267, 492
SatI	GCNGC	1 cut(s)	915
Sau3AI	GATC	2 cut(s)	111, 637
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	2 cut(s)	77, 271
SetI	ASST	7 cut(s)	158, 168, 238, 404, 567, 651, 759
SfaNI	GCATC	2 cut(s)	752, 966
Sfr274I	CTCGAG	1 cut(s)	860
Sfr303I	CCGCGG	1 cut(s)	348
SfuI	TTCGAA	2 cut(s)	212, 718
SgrBI	CCGCGG	1 cut(s)	348
SlaI	CTCGAG	1 cut(s)	860
SmiMI	CAYNNNNRTG	2 cut(s)	58, 932
SmlI	CTYRAG	2 cut(s)	641, 860
SmoI	CTYRAG	2 cut(s)	641, 860
Sse9I	AATT	6 cut(s)	208, 440, 568, 621, 808, 830
SsiI	CCGC	3 cut(s)	30, 345, 347
SspMI	CTAG	3 cut(s)	80, 173, 740
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	6 cut(s)	196, 389, 558, 592, 628, 853
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	7 cut(s)	212, 294, 560, 718, 819, 861, 944
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	6 cut(s)	208, 440, 568, 621, 808, 830
Tru1I	TTAA	2 cut(s)	267, 492
Tru9I	TTAA	2 cut(s)	267, 492
TscAI	CASTG	5 cut(s)	597, 618, 633, 873, 939
TseFI	GTSAC	3 cut(s)	316, 604, 992
TseI	GCWGC	1 cut(s)	914
Tsp45I	GTSAC	3 cut(s)	316, 604, 992
TspDTI	ATGAA	4 cut(s)	25, 491, 886, 1032
TspRI	CASTG	5 cut(s)	597, 618, 633, 873, 939
XapI	RAATTY	3 cut(s)	208, 808, 830
XceI	RCATGY	1 cut(s)	974
XcmI	CCANNNNNNNNNTGG	2 cut(s)	707, 794
XhoI	CTCGAG	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	3 cut(s)	80, 173, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.