Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

34959003 .. 34959207

Gene Structure 205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGCCACTCCTTTCTTTGTTCTCTTTCCTCTCTCTCAACAACCGCGTCACCGACGTCGGTCTTTGGAATCTCTACCTCCTCATCAGTCTCGAGAACCGCGTCAAATATACCGTCGTCGAGGTCCTCAATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

45

Amino Acids

5.23

Weight (kDa)

4.58

Isoelectric Point (pI)

21.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
AccII	CGCG	2 cut(s)	45, 99
AciI	CCGC	2 cut(s)	43, 97
AcyI	GRCGYC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	45, 99
BsiHKCI	CYCGRG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	89
BspACI	CCGC	2 cut(s)	43, 97
BspFNI	CGCG	2 cut(s)	45, 99
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	54
BstFNI	CGCG	2 cut(s)	45, 99
BstMAI	GTCTC	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	57
BstUI	CGCG	2 cut(s)	45, 99
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	2 cut(s)	34, 88
Eco47I	GGWCC	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	121
FaiI	YATR	1 cut(s)	108
FspBI	CTAG	1 cut(s)	136
HgaI	GACGC	2 cut(s)	34, 88
Hin1I	GRCGYC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	89, 91
Hpy99I	CGWCG	4 cut(s)	56, 59, 116, 119
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	136
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	38, 86, 89, 112, 134
MvnI	CGCG	2 cut(s)	45, 99
NmuCI	GTSAC	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	121
PshAI	GACNNNNGTC	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	121
PspPPI	RGGWCCY	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	121
SetI	ASST	3 cut(s)	57, 78, 123
Sfr274I	CTCGAG	1 cut(s)	89
SgeI	CNNG	5 cut(s)	56, 101, 103, 110, 130
SinI	GGWCC	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	2 cut(s)	43, 97
SspMI	CTAG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	90, 117
TaqII	GACCGA	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	1 cut(s)	136
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.