Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

23525747 .. 23529671

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAGAAAAGGAAGATTGGTCGACCGCGCACCATGGCTGAATATTTGAGTTCCAGCAGCTCTCAATCTTCAAGCAACAGCATTTCCTCATCACAACAGCCATCACAGTCTTCAAGATTGTCACCACCATCTCCTTCCCCTCCACCTCCTCCTCCACCGCCTCCTCCACCTCCTCCACCTCCTCCACCACCGCCACCCCCTGCACCACCATCTCCACCAGCAGAGATGGAAGTACAAGCTACTGCTGAAAGTTCCAGAGGTCAAAATAAGGGTATCTCAGAATGGAATACTGGAGTTAAAGTTGAAATCAAGTTTGATTCTACGTTCCAACCTGTGGGAGATAGGGCTGCCCAATTAAAGTCGCAGTTAGGACAAATTGTAAGGGATGGGCAAAGAATTCCCCTTACAATAATTGATTGGAAGTCTGTTGGAGCTGAAGTGAAAGATGGAATATGGAAAGAAGTTAAGGATAATTTGCTCAATGTTCCAGAAGGATATAAAACTGTATGTTTGAGATGTTGCAATAGTCTGTGGAAGGATCATAAAAGCAAAACGAAACTCAACTTCTTTGAGAAAAACAAAGAAGATCCAGATATTCTTTCAAAAGTTCCTGCCAATATTGTGACAGAGCAATGGAGTGAGCTAGTTGCCTATTGGAGTAGTGAGGAAGCTAAGATGATAGCAAGAAGAAATTCTATCAATAGGGAGCTTCGTGGACCAGTTCATACTACTGGTCGAAAACACTTTGCTCAATTACGATTTGAGATGGAGCAAAATGGAGAAGAAACTGTTAAGATGAATGTGTGGAAAAAAGCACGAGACCAGTCAAAACCAGAAGTAGTTGAAGTCATTGAAGAATATGAAAAACGACTTTTATTAGAACCTGAGGACCAAAGGAACCTTCAGGCTGTCAAAGACCGTATATTTCATGAATTGATTGGAGAGGATGGCCATGGATATTGTCGCACCTATGGATCTGGCGTGCCTAGAAGATTTGTCTACCTACATGCACCAAATTCCTCTGAAACCACTGATGATATAATACAGAAAGTAACTGAATCTGTGGCAAAAAAGTTTCAGGATCAGCTTAATATGCTACAAGCTCGAATTGATTTTTTGGAGAACAAAGAGAAGAGAGGCACAGATCAAAATGGACAGGTTCCAGATGCAACTAGTGACCATGAAATTCGGAGGGAGTCTATAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

416

Amino Acids

46.75

Weight (kDa)

7.07

Isoelectric Point (pI)

66.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	210 - 328	8.7e-19	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	22, 999
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	26, 158, 191
AclWI	GGATC	4 cut(s)	546, 581, 982, 1089
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	4 cut(s)	396, 691, 1015, 1185
AcuI	CTGAAG	2 cut(s)	456, 887
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	7 cut(s)	72, 114, 305, 603, 845, 854, 1227
AhlI	ACTAGT	1 cut(s)	1172
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	8 cut(s)	60, 239, 434, 643, 671, 709, 1087, 1103
AluI	AGCT	8 cut(s)	60, 239, 434, 643, 671, 709, 1087, 1103
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	4 cut(s)	546, 581, 982, 1089
AoxI	GGCC	1 cut(s)	949
ApeKI	GCWGC	2 cut(s)	57, 347
ApoI	RAATTY	4 cut(s)	396, 691, 1015, 1185
Asp700I	GAANNNNTTC	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	716, 889
AsuHPI	GGTGA	1 cut(s)	114
AvaII	GGWCC	2 cut(s)	716, 889
AxyI	CCTNAGG	1 cut(s)	885
BalI	TGGCCA	1 cut(s)	951
BauI	CACGAG	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	69, 334
BccI	CCATC	8 cut(s)	109, 136, 217, 220, 380, 440, 760, 941
BcoDI	GTCTC	1 cut(s)	813
BcuI	ACTAGT	1 cut(s)	1172
BfaI	CTAG	3 cut(s)	644, 987, 1173
BfmI	CTRYAG	1 cut(s)	1200
BisI	GCNGC	2 cut(s)	58, 348
BlsI	GCNGC	2 cut(s)	59, 349
Bme18I	GGWCC	2 cut(s)	716, 889
BmgT120I	GGNCC	2 cut(s)	716, 889
BmiI	GGNNCC	2 cut(s)	899, 1161
BmsI	GCATC	1 cut(s)	1156
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	33, 952
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	4 cut(s)	295, 719, 736, 823
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	2 cut(s)	638, 1248
BseDI	CCNNGG	2 cut(s)	33, 952
BseGI	GGATG	2 cut(s)	391, 952
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	2 cut(s)	638, 1248
BseMII	CTCAG	2 cut(s)	291, 876
BseNI	ACTGG	4 cut(s)	295, 719, 736, 823
BseRI	GAGGAG	5 cut(s)	138, 141, 153, 162, 171
BseXI	GCAGC	2 cut(s)	69, 334
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	951
BsiEI	CGRYCG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	813
BsnI	GGCC	1 cut(s)	951
Bso31I	GGTCTC	1 cut(s)	813
Bsp143I	GATC	5 cut(s)	538, 586, 974, 1081, 1144
Bsp19I	CCATGG	2 cut(s)	33, 952
BspACI	CCGC	3 cut(s)	26, 158, 191
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	2 cut(s)	290, 877
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	2 cut(s)	899, 1161
BspPI	GGATC	4 cut(s)	546, 581, 982, 1089
BspTNI	GGTCTC	1 cut(s)	813
BsrDI	GCAATG	2 cut(s)	638, 1248
BsrI	ACTGG	4 cut(s)	295, 719, 736, 823
BssECI	CCNNGG	2 cut(s)	33, 952
BssMI	GATC	5 cut(s)	538, 586, 974, 1081, 1144
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	2 cut(s)	33, 952
Bst2BI	CACGAG	1 cut(s)	816
Bst4CI	ACNGT	4 cut(s)	108, 505, 790, 920
Bst6I	CTCTTC	1 cut(s)	1127
BstC8I	GCNNGC	1 cut(s)	983
BstDEI	CTNAG	3 cut(s)	277, 672, 885
BstDSI	CCRYGG	2 cut(s)	33, 952
BstF5I	GGATG	2 cut(s)	391, 952
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	5 cut(s)	541, 589, 977, 1084, 1147
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	5 cut(s)	538, 586, 974, 1081, 1144
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	1093
BstNSI	RCATGY	1 cut(s)	1010
BstSFI	CTRYAG	1 cut(s)	1200
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	69, 334
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	586, 974
BstYI	RGATCY	2 cut(s)	586, 974
Bsu36I	CCTNAGG	1 cut(s)	885
BsuRI	GGCC	1 cut(s)	951
BtgI	CCRYGG	2 cut(s)	33, 952
BtsCI	GGATG	2 cut(s)	391, 952
BtsI	GCAGTG	1 cut(s)	1237
BtsIMutI	CAGTG	2 cut(s)	1029, 1237
Cac8I	GCNNGC	1 cut(s)	983
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	716, 889
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	5 cut(s)	34, 929, 953, 1007, 1181
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	3 cut(s)	277, 672, 885
DpnI	GATC	5 cut(s)	540, 588, 976, 1083, 1146
DpnII	GATC	5 cut(s)	538, 586, 974, 1081, 1144
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	1127
EarI	CTCTTC	1 cut(s)	1127
Eco130I	CCWWGG	2 cut(s)	33, 952
Eco31I	GGTCTC	1 cut(s)	813
Eco47I	GGWCC	2 cut(s)	716, 889
Eco57I	CTGAAG	2 cut(s)	456, 887
Eco81I	CCTNAGG	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	33, 952
ErhI	CCWWGG	2 cut(s)	33, 952
FaeI	CATG	5 cut(s)	37, 932, 956, 1010, 1184
FatI	CATG	5 cut(s)	33, 928, 952, 1006, 1180
FblI	GTMKAC	2 cut(s)	22, 999
Fnu4HI	GCNGC	2 cut(s)	58, 348
FokI	GGATG	2 cut(s)	398, 959
Fsp4HI	GCNGC	2 cut(s)	58, 348
FspBI	CTAG	3 cut(s)	644, 987, 1173
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	58, 348
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	951
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	37, 932, 956, 1010, 1184
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	5 cut(s)	317, 1058, 1196, 1216, 1223
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	3 cut(s)	23, 716, 1000
Hpy188I	TCNGA	3 cut(s)	280, 1024, 1191
Hpy188III	TCNNGA	8 cut(s)	114, 255, 488, 590, 929, 1079, 1163, 1220
Hpy8I	GTNNAC	3 cut(s)	23, 716, 1000
HpyAV	CCTTC	5 cut(s)	144, 485, 529, 911, 1205
HpyCH4III	ACNGT	4 cut(s)	108, 505, 790, 920
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	4 cut(s)	203, 522, 1010, 1169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1093
HpyF3I	CTNAG	3 cut(s)	277, 672, 885
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	5 cut(s)	37, 932, 956, 1010, 1184
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	538, 586, 974, 1081, 1144
LmnI	GCTCC	3 cut(s)	431, 706, 769
Lsp1109I	GCAGC	2 cut(s)	69, 334
LweI	GCATC	1 cut(s)	1156
MaeI	CTAG	3 cut(s)	644, 987, 1173
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	120, 622, 1051, 1175
MalI	GATC	5 cut(s)	540, 588, 976, 1083, 1146
MboI	GATC	5 cut(s)	538, 586, 974, 1081, 1144
MflI	RGATCY	2 cut(s)	586, 974
MlsI	TGGCCA	1 cut(s)	951
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	1 cut(s)	1205
MmeI	TCCRAC	2 cut(s)	352, 409
Mox20I	TGGCCA	1 cut(s)	951
MroXI	GAANNNNTTC	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	5 cut(s)	297, 356, 465, 792, 1089
Msp20I	TGGCCA	1 cut(s)	951
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	1093
NcoI	CCATGG	2 cut(s)	33, 952
NdeII	GATC	5 cut(s)	538, 586, 974, 1081, 1144
NlaIII	CATG	5 cut(s)	37, 932, 956, 1010, 1184
NlaIV	GGNNCC	2 cut(s)	899, 1161
NmuCI	GTSAC	3 cut(s)	120, 622, 1175
NspI	RCATGY	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	928
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	4 cut(s)	317, 1058, 1216, 1223
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	59, 349
PleI	GAGTC	1 cut(s)	1204
PpsI	GAGTC	1 cut(s)	1204
PspN4I	GGNNCC	2 cut(s)	899, 1161
PspPI	GGNCC	2 cut(s)	716, 889
PsuI	RGATCY	2 cut(s)	586, 974
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	297, 356, 465, 792, 1089
SatI	GCNGC	2 cut(s)	58, 348
Sau3AI	GATC	5 cut(s)	538, 586, 974, 1081, 1144
Sau96I	GGNCC	2 cut(s)	716, 889
SchI	GAGTC	1 cut(s)	1205
SfaNI	GCATC	1 cut(s)	1156
SfcI	CTRYAG	1 cut(s)	1200
SinI	GGWCC	2 cut(s)	716, 889
SpeI	ACTAGT	1 cut(s)	1172
SsiI	CCGC	3 cut(s)	26, 158, 191
SspI	AATATT	2 cut(s)	44, 619
SspMI	CTAG	3 cut(s)	644, 987, 1173
StyI	CCWWGG	2 cut(s)	33, 952
TaaI	ACNGT	4 cut(s)	108, 505, 790, 920
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	22, 736, 1105
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	4 cut(s)	317, 1058, 1216, 1223
Tru1I	TTAA	5 cut(s)	297, 356, 465, 792, 1089
Tru9I	TTAA	5 cut(s)	297, 356, 465, 792, 1089
TscAI	CASTG	2 cut(s)	1036, 1237
TseFI	GTSAC	3 cut(s)	120, 622, 1175
TseI	GCWGC	2 cut(s)	57, 347
Tsp45I	GTSAC	3 cut(s)	120, 622, 1175
TspDTI	ATGAA	7 cut(s)	17, 713, 812, 876, 917, 945, 1197
TspRI	CASTG	2 cut(s)	1036, 1237
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	716, 889
XapI	RAATTY	4 cut(s)	396, 691, 1015, 1185
XceI	RCATGY	1 cut(s)	1010
XmiI	GTMKAC	2 cut(s)	22, 999
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	3 cut(s)	644, 987, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.