Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

55705267 .. 55719675

Gene Structure 14409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG414700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGTTTGTGTGTCAATAATTGTTGTAAGAACTTCGTGATGGTGAAGTATAATCTTATATATGAGACGCGGTATGGTAGTTCAAGGAGCAACCGCGTCGCCAACGTCGGCCTCCGGAACCTCGACCTCCTCTTGAGCCTTGATAACCGCGACAAATATACTGTCGTCGAGGCCCACAACGGTGATTACAGCCTCTCGAGATCGGGATCTGCTGCCTTGATCCGATGTTGGAATCGCTGCGGCAACGGCGAGCGCCGCGACACCTACGTCGGCTGCAAGGGCGCCGTTTGGTACTCCGACATCGGGCTTCGTTCACCAGCGAGCCCACATGAGGCAATTTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

115

Amino Acids

12.94

Weight (kDa)

9.17

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	4 cut(s)	70, 96, 150, 258
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	5 cut(s)	70, 94, 148, 240, 256
AclWI	GGATC	2 cut(s)	214, 214
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	303, 331
AgsI	TTSAA	1 cut(s)	84
AleI	CACNNNNGTG	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	214, 214
Ama87I	CYCGRG	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	2 cut(s)	109, 171
ApeKI	GCWGC	3 cut(s)	212, 237, 273
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	2 cut(s)	255, 284
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	55, 194, 306
AvaI	CYCGRG	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	199, 224, 260
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	262, 269
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcoDI	GTCTC	1 cut(s)	59
BfoI	RGCGCY	2 cut(s)	256, 285
BisI	GCNGC	5 cut(s)	213, 238, 241, 256, 274
BlsI	GCNGC	5 cut(s)	214, 239, 242, 257, 275
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	119, 283
BpuEI	CTTGAG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	282
BsaWI	WCCGGW	2 cut(s)	114, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 331
Bse8I	GATNNNNATC	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	303, 331
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	199, 224, 260
Bsh1236I	CGCG	4 cut(s)	70, 96, 150, 258
BshFI	GGCC	2 cut(s)	111, 173
BshNI	GGYRCC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	115, 343
BslI	CCNNNNNNNGG	2 cut(s)	303, 331
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	111, 173
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	200, 206, 219
BspACI	CCGC	5 cut(s)	70, 94, 148, 240, 256
BspANI	GGCC	2 cut(s)	111, 173
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	4 cut(s)	70, 96, 150, 258
BspLI	GGNNCC	2 cut(s)	119, 283
BspPI	GGATC	2 cut(s)	214, 214
BspT107I	GGYRCC	1 cut(s)	281
BssMI	GATC	3 cut(s)	200, 206, 219
BssNI	GRCGYC	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	163, 182
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	251, 322
BstFNI	CGCG	4 cut(s)	70, 96, 150, 258
BstH2I	RGCGCY	2 cut(s)	256, 285
BstHHI	GCGC	2 cut(s)	255, 284
BstKTI	GATC	3 cut(s)	203, 209, 222
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	200, 206, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 255, 279
BstUI	CGCG	4 cut(s)	70, 96, 150, 258
BstV1I	GCAGC	3 cut(s)	199, 224, 260
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	111, 173
Cac8I	GCNNGC	2 cut(s)	251, 322
CfoI	GCGC	2 cut(s)	255, 284
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	2 cut(s)	76, 85
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	7 cut(s)	111, 138, 173, 192, 273, 307, 324
CviKI_1	RGCY	7 cut(s)	111, 138, 173, 192, 273, 307, 324
CviQI	GTAC	1 cut(s)	292
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	3 cut(s)	202, 208, 221
DpnII	GATC	3 cut(s)	200, 206, 219
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	326
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	332
FaiI	YATR	7 cut(s)	51, 59, 61, 63, 75, 159, 330
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	5 cut(s)	213, 238, 241, 256, 274
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	5 cut(s)	213, 238, 241, 256, 274
GlaI	GCGC	2 cut(s)	254, 283
GluI	GCNGC	5 cut(s)	213, 238, 241, 256, 274
HaeII	RGCGCY	2 cut(s)	256, 285
HaeIII	GGCC	2 cut(s)	111, 173
HapII	CCGG	2 cut(s)	115, 343
HgaI	GACGC	2 cut(s)	76, 85
HhaI	GCGC	2 cut(s)	255, 284
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	2 cut(s)	253, 282
HinP1I	GCGC	2 cut(s)	253, 282
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	115, 343
HphI	GGTGA	3 cut(s)	55, 194, 306
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	224, 298
Hpy188III	TCNNGA	6 cut(s)	37, 115, 133, 196, 198, 204
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	4 cut(s)	101, 110, 170, 272
HpyCH4III	ACNGT	2 cut(s)	163, 182
HpyCH4IV	ACGT	2 cut(s)	105, 267
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 255, 279
HpySE526I	ACGT	2 cut(s)	105, 267
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	2 cut(s)	253, 282
KasI	GGCGCC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	200, 206, 219
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	2 cut(s)	128, 330
Lsp1109I	GCAGC	3 cut(s)	199, 224, 260
MaeII	ACGT	2 cut(s)	105, 267
MalI	GATC	3 cut(s)	202, 208, 221
MboI	GATC	3 cut(s)	200, 206, 219
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	2 cut(s)	19, 336
Mly113I	GGCGCC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	209, 321
MnlI	CCTC	7 cut(s)	122, 131, 137, 140, 163, 203, 325
MroI	TCCGGA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	115, 343
MvnI	CGCG	4 cut(s)	70, 96, 150, 258
MwoI	GCNNNNNNNGC	3 cut(s)	246, 255, 279
NarI	GGCGCC	1 cut(s)	282
NdeII	GATC	3 cut(s)	200, 206, 219
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	119, 283
OliI	CACNNNNGTG	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	214, 239, 242, 257, 275
PluTI	GGCGCC	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	119, 283
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	180
SatI	GCNGC	5 cut(s)	213, 238, 241, 256, 274
Sau3AI	GATC	3 cut(s)	200, 206, 219
Sau96I	GGNCC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	5 cut(s)	108, 123, 129, 266, 270
SfoI	GGCGCC	1 cut(s)	283
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	133, 196
SmoI	CTYRAG	2 cut(s)	133, 196
Sse9I	AATT	2 cut(s)	19, 336
SsiI	CCGC	5 cut(s)	70, 94, 148, 240, 256
SspDI	GGCGCC	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	163, 182
TaiI	ACGT	2 cut(s)	108, 270
TaqI	TCGA	3 cut(s)	123, 168, 197
TasI	AATT	2 cut(s)	19, 336
TauI	GCSGC	2 cut(s)	243, 258
TfiI	GAWTC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	212, 237, 273
XhoI	CTCGAG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.