Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

39220059 .. 39221294

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG201600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAATGAGAATAAATTGCAGATAACGGAGGTGAGGTCGGAGGTGACCCTAGTGGTGAGGATGATTGCAGTTGTGGGCAACTATGACTACATAATCGATTGGGAATTCAAACCAAGTGGATCCATAAAACTTGAGGTTGGGCTCACTGGTGTGCTAGAAACTGAAGGGGTCAGATACACCCACAAAGACCAAATAAACGAGGAAGTTTATGGTACACTAGTTACAGATAACACAATTGCTGTGAACCATGACCACTTCTTGACTTACTATCTTGACCTTGATGTGGACGGTGAAGCCAACTCTTTTGTTAAGAACAATTTGGTGACCAAACGTGTGACAGACCGGAGTATCCCAAGAAAGAGTTATTGGACAGTGGTAAGCGAGACTGCTAAGACGGAATCAGATGCAAAGATTCATTTGGGTTTGAAGCCGTCTGAACTAGTCGTGGTGAACCCTAATAAAAGGACCAAACCTGGGAATTCTGTCGGTTATCGCTTGATTCCAGGATCAGTTGCAGCACCCCTTCTGTTAGAGGAAGATTACCCTCAAATTCGGGGTGCTTTTACTAAGTTCAATGTGTGGGTTACACCGTATAACAAATCTGAAAAATGGGCAGGAGGGAAATATGTTGACCAAAGCCGAGGAGGTGATACCTTAGCAGTTTGGAGTCTCAGGGATAGGGAAATTGAGAACAAAGACATAGTGCTGTGGTACACAATTGGCTTTCACCATGCTCCTTGCCAGGAAGACTTTCCAATGATGCCAACATTAAGTGGTGGATTTGAGCTCCGGCCAACCAATTTCTTTGAACGCAGTCCGGTGCTTAAAGTTAGAATAACACCACCTCCTAAGCATGCGGACTCCCCTAATTGCACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

293

Amino Acids

33.18

Weight (kDa)

6.2

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	7 - 275	2.4e-87	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	3 cut(s)	114, 127, 514
AcoI	YGGCCR	1 cut(s)	791
AcsI	RAATTY	3 cut(s)	104, 478, 549
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	214, 713
AfiI	CCNNNNNNNGG	2 cut(s)	283, 474
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	109, 427, 574, 809
AhlI	ACTAGT	2 cut(s)	217, 439
AjnI	CCWGG	3 cut(s)	472, 502, 741
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	787
AluI	AGCT	1 cut(s)	787
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	2 cut(s)	377, 674
AlwI	GGATC	3 cut(s)	114, 127, 514
AoxI	GGCC	1 cut(s)	791
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	104, 478, 549
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	8 cut(s)	43, 55, 67, 302, 334, 460, 659, 719
AvaII	GGWCC	1 cut(s)	465
BaeI	ACNNNNGTAYC	4 cut(s)	204, 237, 331, 364
BamHI	GGATCC	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	144, 789
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	3 cut(s)	474, 504, 743
BciVI	GTATCC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	377, 674
BcuI	ACTAGT	2 cut(s)	217, 439
BfaI	CTAG	4 cut(s)	50, 155, 218, 440
BfuI	GTATCC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	3 cut(s)	474, 504, 743
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	3 cut(s)	474, 504, 743
BmsI	GCATC	2 cut(s)	394, 750
BpiI	GAAGAC	1 cut(s)	753
Bpu10I	CCTNAGC	2 cut(s)	655, 849
BpuEI	CTTGAG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	473, 640
BsaWI	WCCGGW	2 cut(s)	342, 817
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 829, 859
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 474
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	474, 504, 743
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	473, 640
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	283, 474
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	1 cut(s)	793
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	3 cut(s)	343, 790, 818
BslI	CCNNNNNNNGG	2 cut(s)	283, 474
BsmAI	GTCTC	2 cut(s)	377, 674
BsnI	GGCC	1 cut(s)	793
Bsp1286I	GDGCHC	2 cut(s)	144, 789
Bsp143I	GATC	2 cut(s)	119, 506
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	1 cut(s)	793
BspCNI	CTCAG	1 cut(s)	684
BspDI	ATCGAT	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	3 cut(s)	114, 127, 514
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	473, 640
BssMI	GATC	2 cut(s)	119, 506
Bst2UI	CCWGG	3 cut(s)	474, 504, 743
Bst4CI	ACNGT	3 cut(s)	290, 373, 591
BstC8I	GCNNGC	1 cut(s)	855
BstDEI	CTNAG	5 cut(s)	390, 567, 655, 671, 849
BstEII	GGTNACC	2 cut(s)	43, 322
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	2 cut(s)	122, 509
BstMAI	GTCTC	2 cut(s)	377, 674
BstMBI	GATC	2 cut(s)	119, 506
BstNI	CCWGG	3 cut(s)	474, 504, 743
BstNSI	RCATGY	1 cut(s)	857
BstPI	GGTNACC	2 cut(s)	43, 322
BstSCI	CCNGG	3 cut(s)	472, 502, 741
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	793
BsuTUI	ATCGAT	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	144, 378
Cac8I	GCNNGC	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	213, 712
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	3 cut(s)	248, 731, 854
CviJI	RGCY	7 cut(s)	142, 296, 430, 639, 723, 787, 793
CviKI_1	RGCY	7 cut(s)	142, 296, 430, 639, 723, 787, 793
CviQI	GTAC	2 cut(s)	213, 712
DdeI	CTNAG	5 cut(s)	390, 567, 655, 671, 849
DpnI	GATC	2 cut(s)	121, 508
DpnII	GATC	2 cut(s)	119, 506
EaeI	YGGCCR	1 cut(s)	791
Ecl136II	GAGCTC	1 cut(s)	787
Eco24I	GRGCYC	2 cut(s)	144, 789
Eco47I	GGWCC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	183
Eco91I	GGTNACC	2 cut(s)	43, 322
EcoICRI	GAGCTC	1 cut(s)	787
EcoO65I	GGTNACC	2 cut(s)	43, 322
EcoRI	GAATTC	2 cut(s)	104, 478
EcoRII	CCWGG	3 cut(s)	472, 502, 741
EcoT38I	GRGCYC	2 cut(s)	144, 789
FaeI	CATG	3 cut(s)	251, 734, 857
FatI	CATG	3 cut(s)	247, 730, 853
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	2 cut(s)	144, 789
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	4 cut(s)	50, 155, 218, 440
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	793
HapII	CCGG	3 cut(s)	343, 790, 818
Hin1II	CATG	3 cut(s)	251, 734, 857
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	5 cut(s)	398, 412, 499, 667, 860
HpaII	CCGG	3 cut(s)	343, 790, 818
HphI	GGTGA	8 cut(s)	43, 55, 67, 302, 334, 460, 659, 719
Hpy166II	GTNNAC	6 cut(s)	215, 244, 286, 451, 631, 714
Hpy188I	TCNGA	5 cut(s)	40, 173, 403, 436, 604
Hpy188III	TCNNGA	2 cut(s)	259, 272
Hpy8I	GTNNAC	6 cut(s)	215, 244, 286, 451, 631, 714
HpyAV	CCTTC	2 cut(s)	158, 533
HpyCH4III	ACNGT	3 cut(s)	290, 373, 591
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	19, 68, 407, 515, 873
HpyF3I	CTNAG	5 cut(s)	390, 567, 655, 671, 849
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	3 cut(s)	251, 734, 857
Kzo9I	GATC	2 cut(s)	119, 506
LmnI	GCTCC	2 cut(s)	739, 792
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	2 cut(s)	394, 750
MaeI	CTAG	4 cut(s)	50, 155, 218, 440
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	5 cut(s)	43, 220, 322, 334, 583
MalI	GATC	2 cut(s)	121, 508
MboI	GATC	2 cut(s)	119, 506
MboII	GAAGA	2 cut(s)	548, 758
MfeI	CAATTG	2 cut(s)	234, 717
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	144, 789
MlyI	GAGTC	2 cut(s)	676, 854
MmeI	TCCRAC	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	309, 770, 825
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	3 cut(s)	343, 790, 818
MspR9I	CCNGG	3 cut(s)	474, 504, 743
MunI	CAATTG	2 cut(s)	234, 717
MvaI	CCWGG	3 cut(s)	474, 504, 743
NdeII	GATC	2 cut(s)	119, 506
NlaIII	CATG	3 cut(s)	251, 734, 857
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	665
NmuCI	GTSAC	3 cut(s)	43, 322, 334
NspI	RCATGY	1 cut(s)	857
OliI	CACNNNNGTG	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	857
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	398, 412, 499
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	675, 854
PpsI	GAGTC	2 cut(s)	675, 854
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	472, 502, 741
PspEI	GGTNACC	2 cut(s)	43, 322
PspGI	CCWGG	3 cut(s)	472, 502, 741
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	2 cut(s)	214, 713
RsaNI	GTAC	2 cut(s)	213, 712
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	309, 770, 825
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	119, 506
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	676, 854
ScrFI	CCNGG	3 cut(s)	474, 504, 743
SduI	GDGCHC	2 cut(s)	144, 789
SfaNI	GCATC	2 cut(s)	394, 750
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	2 cut(s)	217, 439
SphI	GCATGC	1 cut(s)	857
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	4 cut(s)	50, 155, 218, 440
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	3 cut(s)	472, 502, 741
TaaI	ACNGT	3 cut(s)	290, 373, 591
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	398, 412, 499
Tru1I	TTAA	3 cut(s)	309, 770, 825
Tru9I	TTAA	3 cut(s)	309, 770, 825
TscAI	CASTG	2 cut(s)	151, 378
TseFI	GTSAC	3 cut(s)	43, 322, 334
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	3 cut(s)	43, 322, 334
TspDTI	ATGAA	2 cut(s)	17, 404
TspGWI	ACGGA	2 cut(s)	41, 410
TspRI	CASTG	2 cut(s)	151, 378
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	3 cut(s)	104, 478, 549
XceI	RCATGY	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	4 cut(s)	50, 155, 218, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.