Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

34621204 .. 34625452

Gene Structure 4249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGTCCATAGCTTCAAGAATGGCATCAACTTTCTCATTATTCTTCTCCATTTTCATCGTCACCTTCTCACCAACCTTGTGCCTGAACCAGTACCATCCCCTAGACCCTCTAACCCAGTCGGAGTTCAATCAGATCAAATCCATAATTCAAAGCTCATACCCCTCTCAAAACCTCACGTTCCAATATGTCGGGTTAGACGAACCAGAAAAGTCCACTGTCATCTTATGGAATTCCAAATCCACAGCCAAATCCTACCCTCCTCGCCGAGCCTCAGTTGTTACAAGACTAAATAAACAAACCCACGAGATTATAGTCGATTTATCAACCCATTCTATTCTCTCTAGTAAAGTTCACAAGGGAAATGGCTACCCTCTGCTAACCGCAGACGAACAAACACTTGCAAATGAGTTGCCTTTTAATTATCAACCATTCATTCAATCCATTAAAAGGAGAGGGCTTAATATATCCCAAGTTGTGTGTAGTGGTTTTACAGTTGGTTGGTTCGGAGAGGGAAAGACTAGAAGAATAATAAAGATTAATTCCTTTTACACAAATGGGACAGTGAACTTGTTTGTGAGGCCAGTGGAGGGAATAACGTTGGTTGTTGATCTTGATATAATGAAGATAGTTCAATACAGTGACAGGGCTGTCGTTCCGGTGCCAAAGGGAGAGGGAACCGAGTACCGGGCCTCAAAGCAGAAGCGGCCTTTTGGTCCACGACTAAATGGTGCTTCAGTTTTGTCTGGGGGAGAAGGGTTCGTCCTTGACGGGAACATTATCAGATGGGCCAACTGGGTTTTTCATCTCGGATTTGATGTTCGAACGGGAACGATTATATCTCAAGCATCAATTTACGATCTGGACAAGAAGAAATACAGGAGAGTTTTGTACAGAGGGTTTGTCTCAGAGCTGTTTGTGCCTTACATGAACCCAACTGCTGACTGGTACTACAAAACCTTCTTTGACAATGGAGAGTTTGGGTTCGGCCAAACTACTGTCTCACTTGAACCATTGACTGATTGTCCTAACAATGCAAAGTTCATAGATGCCTACTATGCTTCACAAGAAGGCACACCTGTGAAGATATCGAATGCTATATGTATCTTTGAACGGCATGCAGGAAACATCTTGTGGCGTCACACAGAAGTTACCATCCCAGATGAAGTGATAACGGAGGTGAGGTCGGAGGTGACCCTAGTGGTGAGGATGATTGCAGTTGTGGGCAACTATGACTACATAATCGATTGGGAATTCAAACCAAGTGGATCCATAAAACTTGAGGTTGGGCTCACTGGTGTGCTAGAAACTGAAGGGGTCAGATACACCCACAAAGACCAAATAAACGAGGAAGTTTATGGTACACTAGTTACAGATAACACAATTGCTGTGAACCATGACCACTTCTTGACTTACTATCTTGACCTTGATGTGGACGGTGAAGCCAACTCTTTTGTTAAGAATAATTTGGTAACCAAACGTGTGACAGACCGGAGTATCCCAAGAAAGAGTTATTGGACAGTGGTAAGCGAGACTGCTAAGACGGAATCAGATGCAAAGATTCATTTGGGTTTGAAGCCGTCTGAACTAGTCGTGGTGAACCCTAATAAAATGACCAAACCTGGGAATTCTGTTGGTTATCGCTTGATTCCAGGATCAGTTGCAGCACCCCTTCTGTTAGAGGAAGATTACCCTCAAATTCGGGGTGCTTTTACTAAGTACAATGTGTGGGTTACACCGTATAACAAATCTGAAAAATGGGCAGGAGGGAAATATGTTGACCAAAGCCGAGGAGGTGATACCTTAGCAGTTTGGAGTCTCAGGTATCGTCTAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

612

Amino Acids

69.07

Weight (kDa)

8.52

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	32 - 116	3.4e-19	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	124 - 220	2.8e-21	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	249 - 607	5.2e-111	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	658
AciI	CCGC	2 cut(s)	381, 703
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	3 cut(s)	1260, 1273, 1660
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	4 cut(s)	229, 1250, 1624, 1695
AcuI	CTGAAG	2 cut(s)	717, 1329
AcyI	GRCGYC	1 cut(s)	1135
AfaI	GTAC	6 cut(s)	92, 683, 890, 947, 1360, 1718
AfiI	CCNNNNNNNGG	5 cut(s)	447, 587, 684, 1429, 1620
AflIII	ACRYGT	1 cut(s)	1477
AgsI	TTSAA	9 cut(s)	15, 127, 149, 437, 632, 1007, 1109, 1255, 1573
AhdI	GACNNNNNGTC	1 cut(s)	1020
AhlI	ACTAGT	2 cut(s)	1363, 1585
AjnI	CCWGG	2 cut(s)	1618, 1648
AjuI	GAANNNNNNNTTGG	2 cut(s)	1495, 1527
AleI	CACNNNNGTG	2 cut(s)	1076, 1295
AloI	GAACNNNNNNTCC	2 cut(s)	801, 833
AluBI	AGCT	3 cut(s)	11, 153, 910
AluI	AGCT	3 cut(s)	11, 153, 910
Alw26I	GTCTC	4 cut(s)	907, 1003, 1523, 1820
AlwI	GGATC	3 cut(s)	1260, 1273, 1660
AoxI	GGCC	5 cut(s)	578, 687, 704, 786, 985
ApeKI	GCWGC	1 cut(s)	1661
ApoI	RAATTY	4 cut(s)	229, 1250, 1624, 1695
AseI	ATTAAT	2 cut(s)	537, 1833
AspS9I	GGNCC	3 cut(s)	687, 713, 786
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	8 cut(s)	52, 60, 1189, 1201, 1213, 1448, 1606, 1805
AsuII	TTCGAA	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	713
BaeI	ACNNNNGTAYC	4 cut(s)	1350, 1383, 1477, 1510
BamHI	GGATCC	1 cut(s)	1265
BanI	GGYRCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	1290
BauI	CACGAG	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	1673
BccI	CCATC	3 cut(s)	102, 777, 1160
BceAI	ACGGC	2 cut(s)	1127, 1561
BciT130I	CCWGG	2 cut(s)	1620, 1650
BciVI	GTATCC	1 cut(s)	1505
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	4 cut(s)	907, 1003, 1523, 1820
BcuI	ACTAGT	2 cut(s)	1363, 1585
BfaI	CTAG	7 cut(s)	101, 342, 519, 1196, 1301, 1364, 1586
BfuI	GTATCC	1 cut(s)	1505
BisI	GCNGC	2 cut(s)	704, 1662
BlsI	GCNGC	2 cut(s)	705, 1663
Bme1390I	CCNGG	3 cut(s)	686, 1620, 1650
Bme18I	GGWCC	1 cut(s)	713
BmeRI	GACNNNNNGTC	1 cut(s)	1020
BmgT120I	GGNCC	3 cut(s)	687, 713, 786
BmiI	GGNNCC	3 cut(s)	660, 676, 1267
BmrFI	CCNGG	3 cut(s)	686, 1620, 1650
BmrI	ACTGGG	2 cut(s)	109, 802
BmsI	GCATC	4 cut(s)	32, 854, 1036, 1540
BmuI	ACTGGG	2 cut(s)	109, 802
Bpu10I	CCTNAGC	1 cut(s)	1801
Bpu14I	TTCGAA	1 cut(s)	820
BpuEI	CTTGAG	2 cut(s)	825, 1298
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	1242
BsaHI	GRCGYC	1 cut(s)	1135
BsaJI	CCNNGG	2 cut(s)	1619, 1786
BsaWI	WCCGGW	2 cut(s)	655, 1488
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	5 cut(s)	447, 587, 684, 1429, 1620
Bse1I	ACTGG	6 cut(s)	88, 115, 581, 797, 947, 1297
BseBI	CCWGG	2 cut(s)	1620, 1650
BseCI	ATCGAT	1 cut(s)	1242
BseDI	CCNNGG	2 cut(s)	1619, 1786
BseGI	GGATG	3 cut(s)	94, 1152, 1212
BseLI	CCNNNNNNNGG	5 cut(s)	447, 587, 684, 1429, 1620
BseMII	CTCAG	3 cut(s)	285, 918, 1831
BseNI	ACTGG	6 cut(s)	88, 115, 581, 797, 947, 1297
BseRI	GAGGAG	2 cut(s)	249, 1803
BseXI	GCAGC	1 cut(s)	1673
BshFI	GGCC	5 cut(s)	580, 689, 706, 788, 987
BshNI	GGYRCC	1 cut(s)	658
BshVI	ATCGAT	1 cut(s)	1242
BsiSI	CCGG	3 cut(s)	656, 685, 1489
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	5 cut(s)	447, 587, 684, 1429, 1620
BsmAI	GTCTC	4 cut(s)	907, 1003, 1523, 1820
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	5 cut(s)	580, 689, 706, 788, 987
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	1290
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	5 cut(s)	132, 607, 856, 1265, 1652
BspACI	CCGC	2 cut(s)	381, 703
BspANI	GGCC	5 cut(s)	580, 689, 706, 788, 987
BspCNI	CTCAG	3 cut(s)	284, 917, 1830
BspDI	ATCGAT	1 cut(s)	1242
BspLI	GGNNCC	3 cut(s)	660, 676, 1267
BspPI	GGATC	3 cut(s)	1260, 1273, 1660
BspT104I	TTCGAA	1 cut(s)	820
BspT107I	GGYRCC	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	6 cut(s)	88, 115, 581, 797, 947, 1297
BssECI	CCNNGG	2 cut(s)	1619, 1786
BssMI	GATC	5 cut(s)	132, 607, 856, 1265, 1652
BssNI	GRCGYC	1 cut(s)	1135
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	1620, 1650
Bst4CI	ACNGT	8 cut(s)	217, 493, 562, 638, 997, 1436, 1519, 1737
BstACI	GRCGYC	1 cut(s)	1135
BstAUI	TGTACA	1 cut(s)	888
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	1 cut(s)	1116
BstDEI	CTNAG	6 cut(s)	271, 904, 1536, 1713, 1801, 1817
BstEII	GGTNACC	2 cut(s)	1189, 1468
BstF5I	GGATG	3 cut(s)	94, 1152, 1212
BstKTI	GATC	5 cut(s)	135, 610, 859, 1268, 1655
BstMAI	GTCTC	4 cut(s)	907, 1003, 1523, 1820
BstMBI	GATC	5 cut(s)	132, 607, 856, 1265, 1652
BstMWI	GCNNNNNNNGC	3 cut(s)	703, 916, 1055
BstNI	CCWGG	2 cut(s)	1620, 1650
BstNSI	RCATGY	1 cut(s)	1118
BstPI	GGTNACC	2 cut(s)	1189, 1468
BstSCI	CCNGG	3 cut(s)	684, 1618, 1648
BstV1I	GCAGC	1 cut(s)	1673
BstX2I	RGATCY	1 cut(s)	1265
BstYI	RGATCY	1 cut(s)	1265
Bsu15I	ATCGAT	1 cut(s)	1242
BsuI	GTATCC	1 cut(s)	1505
BsuRI	GGCC	5 cut(s)	580, 689, 706, 788, 987
BsuTUI	ATCGAT	1 cut(s)	1242
BtsCI	GGATG	3 cut(s)	94, 1152, 1212
BtsIMutI	CAGTG	6 cut(s)	213, 567, 588, 643, 1290, 1524
Cac8I	GCNNGC	1 cut(s)	1116
Cfr13I	GGNCC	3 cut(s)	687, 713, 786
ClaI	ATCGAT	1 cut(s)	1242
CseI	GACGC	1 cut(s)	1124
Csp6I	GTAC	6 cut(s)	91, 682, 889, 946, 1359, 1717
CspCI	CAANNNNNGTGG	2 cut(s)	1243, 1278
CviAII	CATG	3 cut(s)	925, 1115, 1394
CviQI	GTAC	6 cut(s)	91, 682, 889, 946, 1359, 1717
DdeI	CTNAG	6 cut(s)	271, 904, 1536, 1713, 1801, 1817
DpnI	GATC	5 cut(s)	134, 609, 858, 1267, 1654
DpnII	GATC	5 cut(s)	132, 607, 856, 1265, 1652
DrdI	GACNNNNNNGTC	1 cut(s)	647
DriI	GACNNNNNGTC	1 cut(s)	1020
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	985
Eam1105I	GACNNNNNGTC	1 cut(s)	1020
Eco24I	GRGCYC	1 cut(s)	1290
Eco32I	GATATC	1 cut(s)	1086
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	2 cut(s)	717, 1329
Eco91I	GGTNACC	2 cut(s)	1189, 1468
EcoO65I	GGTNACC	2 cut(s)	1189, 1468
EcoRI	GAATTC	3 cut(s)	229, 1250, 1624
EcoRII	CCWGG	2 cut(s)	1618, 1648
EcoRV	GATATC	1 cut(s)	1086
EcoT38I	GRGCYC	1 cut(s)	1290
FaeI	CATG	3 cut(s)	928, 1118, 1397
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	3 cut(s)	924, 1114, 1393
Fnu4HI	GCNGC	2 cut(s)	704, 1662
FokI	GGATG	3 cut(s)	81, 1139, 1219
FriOI	GRGCYC	1 cut(s)	1290
Fsp4HI	GCNGC	2 cut(s)	704, 1662
FspBI	CTAG	7 cut(s)	101, 342, 519, 1196, 1301, 1364, 1586
GluI	GCNGC	2 cut(s)	704, 1662
HaeIII	GGCC	5 cut(s)	580, 689, 706, 788, 987
HapII	CCGG	3 cut(s)	656, 685, 1489
HgaI	GACGC	1 cut(s)	1124
Hin1I	GRCGYC	1 cut(s)	1135
Hin1II	CATG	3 cut(s)	928, 1118, 1397
HincII	GTYRAC	1 cut(s)	1777
HindII	GTYRAC	1 cut(s)	1777
HinfI	GANTC	4 cut(s)	1544, 1558, 1645, 1813
HpaII	CCGG	3 cut(s)	656, 685, 1489
HphI	GGTGA	8 cut(s)	52, 60, 1189, 1201, 1213, 1448, 1606, 1805
Hpy166II	GTNNAC	9 cut(s)	213, 352, 565, 716, 1361, 1390, 1432, 1597, 1777
Hpy188III	TCNNGA	5 cut(s)	15, 611, 860, 1405, 1418
Hpy8I	GTNNAC	9 cut(s)	213, 352, 565, 716, 1361, 1390, 1432, 1597, 1777
HpyAV	CCTTC	6 cut(s)	73, 746, 967, 1061, 1304, 1679
HpyCH4III	ACNGT	8 cut(s)	217, 493, 562, 638, 997, 1436, 1519, 1737
HpyCH4IV	ACGT	3 cut(s)	176, 596, 1477
HpyCH4V	TGCA	6 cut(s)	401, 1034, 1118, 1214, 1553, 1661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	703, 916, 1055
HpyF3I	CTNAG	6 cut(s)	271, 904, 1536, 1713, 1801, 1817
HpySE526I	ACGT	3 cut(s)	176, 596, 1477
Hsp92I	GRCGYC	1 cut(s)	1135
Hsp92II	CATG	3 cut(s)	928, 1118, 1397
Kzo9I	GATC	5 cut(s)	132, 607, 856, 1265, 1652
Lsp1109I	GCAGC	1 cut(s)	1673
LweI	GCATC	4 cut(s)	32, 854, 1036, 1540
MaeI	CTAG	7 cut(s)	101, 342, 519, 1196, 1301, 1364, 1586
MaeII	ACGT	3 cut(s)	176, 596, 1477
MalI	GATC	5 cut(s)	134, 609, 858, 1267, 1654
MboI	GATC	5 cut(s)	132, 607, 856, 1265, 1652
MboII	GAAGA	6 cut(s)	34, 534, 634, 880, 1093, 1694
MfeI	CAATTG	1 cut(s)	1380
MflI	RGATCY	1 cut(s)	1265
MhlI	GDGCHC	1 cut(s)	1290
MlyI	GAGTC	1 cut(s)	1822
MmeI	TCCRAC	2 cut(s)	99, 1164
MseI	TTAA	7 cut(s)	417, 444, 459, 537, 1455, 1833, 1837
MslI	CAYNNNNRTG	2 cut(s)	1076, 1295
MspI	CCGG	3 cut(s)	656, 685, 1489
MspR9I	CCNGG	3 cut(s)	686, 1620, 1650
MunI	CAATTG	1 cut(s)	1380
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	2 cut(s)	1620, 1650
MwoI	GCNNNNNNNGC	3 cut(s)	703, 916, 1055
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	5 cut(s)	132, 607, 856, 1265, 1652
NlaIII	CATG	3 cut(s)	928, 1118, 1397
NlaIV	GGNNCC	3 cut(s)	660, 676, 1267
NmeAIII	GCCGAG	2 cut(s)	290, 1811
NmuCI	GTSAC	5 cut(s)	58, 638, 1136, 1189, 1480
NspI	RCATGY	1 cut(s)	1118
NspV	TTCGAA	1 cut(s)	820
OliI	CACNNNNGTG	2 cut(s)	1076, 1295
PacI	TTAATTAA	1 cut(s)	1837
PaeI	GCATGC	1 cut(s)	1118
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	1096
PfeI	GAWTC	3 cut(s)	1544, 1558, 1645
PfoI	TCCNGGA	1 cut(s)	1648
PkrI	GCNGC	2 cut(s)	705, 1663
PleI	GAGTC	1 cut(s)	1821
PpsI	GAGTC	1 cut(s)	1821
PshBI	ATTAAT	2 cut(s)	537, 1833
Psp1406I	AACGTT	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	1618, 1648
PspEI	GGTNACC	2 cut(s)	1189, 1468
PspGI	CCWGG	2 cut(s)	1618, 1648
PspN4I	GGNNCC	3 cut(s)	660, 676, 1267
PspPI	GGNCC	3 cut(s)	687, 713, 786
PsuI	RGATCY	1 cut(s)	1265
RsaI	GTAC	6 cut(s)	92, 683, 890, 947, 1360, 1718
RsaNI	GTAC	6 cut(s)	91, 682, 889, 946, 1359, 1717
RseI	CAYNNNNRTG	2 cut(s)	1076, 1295
SaqAI	TTAA	7 cut(s)	417, 444, 459, 537, 1455, 1833, 1837
SatI	GCNGC	2 cut(s)	704, 1662
Sau3AI	GATC	5 cut(s)	132, 607, 856, 1265, 1652
Sau96I	GGNCC	3 cut(s)	687, 713, 786
SchI	GAGTC	1 cut(s)	1822
ScrFI	CCNGG	3 cut(s)	686, 1620, 1650
SduI	GDGCHC	1 cut(s)	1290
SfaNI	GCATC	4 cut(s)	32, 854, 1036, 1540
SfuI	TTCGAA	1 cut(s)	820
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	2 cut(s)	1076, 1295
SmlI	CTYRAG	2 cut(s)	840, 1277
SmoI	CTYRAG	2 cut(s)	840, 1277
SpeI	ACTAGT	2 cut(s)	1363, 1585
SphI	GCATGC	1 cut(s)	1118
SsiI	CCGC	2 cut(s)	381, 703
SspMI	CTAG	7 cut(s)	101, 342, 519, 1196, 1301, 1364, 1586
StyD4I	CCNGG	3 cut(s)	684, 1618, 1648
TaaI	ACNGT	8 cut(s)	217, 493, 562, 638, 997, 1436, 1519, 1737
TaiI	ACGT	3 cut(s)	179, 599, 1480
TaqI	TCGA	4 cut(s)	315, 820, 1088, 1242
TatI	WGTACW	2 cut(s)	888, 1716
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	3 cut(s)	1544, 1558, 1645
Tru1I	TTAA	7 cut(s)	417, 444, 459, 537, 1455, 1833, 1837
Tru9I	TTAA	7 cut(s)	417, 444, 459, 537, 1455, 1833, 1837
TscAI	CASTG	6 cut(s)	220, 567, 588, 643, 1297, 1524
TseFI	GTSAC	5 cut(s)	58, 638, 1136, 1189, 1480
TseI	GCWGC	1 cut(s)	1661
Tsp45I	GTSAC	5 cut(s)	58, 638, 1136, 1189, 1480
TspDTI	ATGAA	8 cut(s)	43, 421, 635, 791, 941, 1030, 1176, 1550
TspGWI	ACGGA	2 cut(s)	1187, 1556
TspRI	CASTG	6 cut(s)	220, 567, 588, 643, 1297, 1524
VpaK11BI	GGWCC	1 cut(s)	713
VspI	ATTAAT	2 cut(s)	537, 1833
XapI	RAATTY	4 cut(s)	229, 1250, 1624, 1695
XceI	RCATGY	1 cut(s)	1118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	939
XspI	CTAG	7 cut(s)	101, 342, 519, 1196, 1301, 1364, 1586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.