Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

79678780 .. 79679358

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCACTGTCTCTCTATCTTCCAGCCTCTCTCTGTTCTCTTTCTCTCAGCAAACCGCATCGCCAACGTCGGCTCGGCCTCCGGAACTTCGACCTCCTCCTCGGCCCCGAGAACCGCGACAAATACACCGTCTTCGAGGTCCTCAACGGCGACTACCTCCTCTCGAGATCGGGATCTGCTGCCTTGCTCCGATGTCGGAATCGCTGCCACAAAGGCGCCGTTTGGTGCTGCGACGTCTCTAGAGCAATCGGTGAAGCTATGGCTCAATTGAAACTCATCACCGCTCTTTTTGTCTCCTGCGTTCTTCTACCTTTGGCTCATGCCATTAGCTACTGCGCACTCAGGCATATGGACCGGACAAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

122

Amino Acids

13.72

Weight (kDa)

9.71

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	3 cut(s)	56, 115, 282
AclWI	GGATC	1 cut(s)	181
AcyI	GRCGYC	2 cut(s)	216, 234
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	2 cut(s)	257, 330
AluI	AGCT	2 cut(s)	257, 330
Alw26I	GTCTC	3 cut(s)	15, 241, 298
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	2 cut(s)	107, 163
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	2 cut(s)	76, 103
ApeKI	GCWGC	3 cut(s)	179, 204, 228
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspLEI	GCGC	2 cut(s)	218, 338
AspS9I	GGNCC	3 cut(s)	104, 139, 352
AsuHPI	GGTGA	2 cut(s)	263, 271
AvaI	CYCGRG	2 cut(s)	107, 163
AvaII	GGWCC	2 cut(s)	139, 352
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	166, 191, 215
BceAI	ACGGC	2 cut(s)	163, 203
BcoDI	GTCTC	3 cut(s)	15, 241, 298
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	180, 205, 229
BlsI	GCNGC	3 cut(s)	181, 206, 230
Bme18I	GGWCC	2 cut(s)	139, 352
BmeT110I	CYCGRG	2 cut(s)	107, 163
BmgT120I	GGNCC	3 cut(s)	104, 139, 352
BmiI	GGNNCC	2 cut(s)	106, 217
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	172
BsaHI	GRCGYC	2 cut(s)	216, 234
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	2 cut(s)	81, 354
Bse8I	GATNNNNATC	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	61, 355
BseRI	GAGGAG	3 cut(s)	86, 89, 149
BseXI	GCAGC	3 cut(s)	166, 191, 215
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	78, 105
BshNI	GGYRCC	1 cut(s)	215
BsiHKCI	CYCGRG	2 cut(s)	107, 163
BsiSI	CCGG	2 cut(s)	82, 355
BsmAI	GTCTC	3 cut(s)	15, 241, 298
BsmBI	CGTCTC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	78, 105
BsoBI	CYCGRG	2 cut(s)	107, 163
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	167, 173
BspACI	CCGC	3 cut(s)	56, 115, 282
BspANI	GGCC	2 cut(s)	78, 105
BspCNI	CTCAG	2 cut(s)	60, 354
BspEI	TCCGGA	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	106, 217
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	167, 173
BssNI	GRCGYC	2 cut(s)	216, 234
Bst4CI	ACNGT	2 cut(s)	9, 130
BstACI	GRCGYC	2 cut(s)	216, 234
BstDEI	CTNAG	2 cut(s)	47, 341
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 338
BstKTI	GATC	2 cut(s)	170, 176
BstMAI	GTCTC	3 cut(s)	15, 241, 298
BstMBI	GATC	2 cut(s)	167, 173
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	166, 191, 215
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	78, 105
BtgZI	GCGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	5
CfoI	GCGC	2 cut(s)	218, 338
Cfr13I	GGNCC	3 cut(s)	104, 139, 352
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	8 cut(s)	26, 73, 78, 105, 257, 263, 317, 330
CviKI_1	RGCY	8 cut(s)	26, 73, 78, 105, 257, 263, 317, 330
DdeI	CTNAG	2 cut(s)	47, 341
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	2 cut(s)	169, 175
DpnII	GATC	2 cut(s)	167, 173
Eco47I	GGWCC	2 cut(s)	139, 352
Eco88I	CYCGRG	2 cut(s)	107, 163
EcoO109I	RGGNCCY	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	1 cut(s)	323
FaiI	YATR	4 cut(s)	260, 321, 348, 350
FatI	CATG	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	180, 205, 229
Fsp4HI	GCNGC	3 cut(s)	180, 205, 229
FspBI	CTAG	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	337
GlaI	GCGC	2 cut(s)	217, 337
GluI	GCNGC	3 cut(s)	180, 205, 229
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	78, 105
HapII	CCGG	2 cut(s)	82, 355
HhaI	GCGC	2 cut(s)	218, 338
Hin1I	GRCGYC	2 cut(s)	216, 234
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	2 cut(s)	216, 336
HinP1I	GCGC	2 cut(s)	216, 336
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	82, 355
HphI	GGTGA	2 cut(s)	263, 271
Hpy188I	TCNGA	2 cut(s)	191, 198
Hpy188III	TCNNGA	5 cut(s)	82, 163, 165, 171, 240
Hpy99I	CGWCG	2 cut(s)	72, 236
HpyCH4III	ACNGT	2 cut(s)	9, 130
HpyCH4IV	ACGT	2 cut(s)	67, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	47, 341
HpySE526I	ACGT	2 cut(s)	67, 234
Hsp92I	GRCGYC	2 cut(s)	216, 234
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	2 cut(s)	216, 336
KasI	GGCGCC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	167, 173
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	4 cut(s)	36, 95, 310, 328
Lsp1109I	GCAGC	3 cut(s)	166, 191, 215
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	67, 234
MalI	GATC	2 cut(s)	169, 175
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	2 cut(s)	167, 173
MboII	GAAGA	3 cut(s)	11, 124, 296
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	1 cut(s)	266
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	9 cut(s)	37, 89, 104, 107, 110, 130, 152, 167, 170
MroI	TCCGGA	1 cut(s)	81
MspI	CCGG	2 cut(s)	82, 355
MunI	CAATTG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	213
NarI	GGCGCC	1 cut(s)	216
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	2 cut(s)	167, 173
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	106, 217
NmeAIII	GCCGAG	2 cut(s)	54, 81
NsbI	TGCGCA	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	181, 206, 230
PluTI	GGCGCC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	106, 217
PspPI	GGNCC	3 cut(s)	104, 139, 352
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	173
SatI	GCNGC	3 cut(s)	180, 205, 229
Sau3AI	GATC	2 cut(s)	167, 173
Sau96I	GGNCC	3 cut(s)	104, 139, 352
SetI	ASST	9 cut(s)	70, 96, 141, 159, 237, 259, 313, 332, 368
SfaNI	GCATC	1 cut(s)	67
SfoI	GGCGCC	1 cut(s)	217
Sfr274I	CTCGAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	139, 352
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	3 cut(s)	56, 115, 282
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	9, 130
TaiI	ACGT	2 cut(s)	70, 237
TaqI	TCGA	3 cut(s)	90, 135, 164
TasI	AATT	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	3 cut(s)	179, 204, 228
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	139, 352
XbaI	TCTAGA	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	163
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.