Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

49100421 .. 49101011

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG204200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACCAAACCTGGGAATTCTGTTGGTTATCGCTTGATTCCAGGATCAGTTGCAGCACCCCTTCTGTTAGAGGAAGATTACCCTCAAATTCGGGGTGCTTTTACTAAGTACAATGTGTGGGTTACACCGTATAACAAATCTGAAAAATGGGCAGGAGGGAAATATGTTGACCAAAGCCGAGGAGGTGATACCTTAGCAGTTTGGAGTCTCAGGGATAGGGAAATTGAGAACAAAGACATAGTGCTGTGGTACACAATTGGCTTTCACCATGCTCCTTGCCAGGAAGACTTTCCAATGATGCCAACATTAAGTGGTGGATTTGAGCTCCGGCCAACCAATTTCTTTGAGCGCAGTCCGGTGCTTAAAGTTAGAATAACACCACCTCCTAAGCATGCGGACTCCCCTAATTGCACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

8.55

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	3 - 121	3.1e-40	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	16, 87
AfaI	GTAC	2 cut(s)	110, 251
AfiI	CCNNNNNNNGG	1 cut(s)	12
AjnI	CCWGG	3 cut(s)	10, 40, 279
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	16, 87
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	197, 257
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	65
BciT130I	CCWGG	3 cut(s)	12, 42, 281
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	3 cut(s)	12, 42, 281
BmrFI	CCNGG	3 cut(s)	12, 42, 281
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	2 cut(s)	193, 387
BsaJI	CCNNGG	2 cut(s)	11, 178
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	12, 42, 281
BseDI	CCNNGG	2 cut(s)	11, 178
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	328, 356
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	222
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	11, 178
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	3 cut(s)	12, 42, 281
Bst4CI	ACNGT	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	105, 193, 209, 387
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	44
BstNI	CCWGG	3 cut(s)	12, 42, 281
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	3 cut(s)	10, 40, 279
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	109, 250
CviAII	CATG	2 cut(s)	269, 392
CviJI	RGCY	4 cut(s)	177, 261, 325, 331
CviKI_1	RGCY	4 cut(s)	177, 261, 325, 331
CviQI	GTAC	2 cut(s)	109, 250
DdeI	CTNAG	4 cut(s)	105, 193, 209, 387
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	10, 40, 279
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	2 cut(s)	272, 395
FaiI	YATR	5 cut(s)	132, 165, 239, 270, 393
FatI	CATG	2 cut(s)	268, 391
Fnu4HI	GCNGC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	328, 356
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	272, 395
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	37, 205, 398
HpaII	CCGG	2 cut(s)	328, 356
HphI	GGTGA	2 cut(s)	197, 257
Hpy166II	GTNNAC	2 cut(s)	169, 252
Hpy188I	TCNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	169, 252
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	53, 411
HpyF3I	CTNAG	4 cut(s)	105, 193, 209, 387
Hsp92II	CATG	2 cut(s)	272, 395
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	277, 330
LpnPI	CCDG	9 cut(s)	24, 27, 54, 138, 196, 266, 293, 341, 369
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	86, 296
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	6 cut(s)	16, 87, 222, 255, 337, 406
MlyI	GAGTC	2 cut(s)	214, 392
MnlI	CCTC	6 cut(s)	64, 93, 149, 173, 176, 393
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	308, 363
MspI	CCGG	2 cut(s)	328, 356
MspR9I	CCNGG	3 cut(s)	12, 42, 281
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	3 cut(s)	12, 42, 281
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	272, 395
NmeAIII	GCCGAG	1 cut(s)	203
NspI	RCATGY	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	213, 392
PpsI	GAGTC	2 cut(s)	213, 392
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	10, 40, 279
PspGI	CCWGG	3 cut(s)	10, 40, 279
RsaI	GTAC	2 cut(s)	110, 251
RsaNI	GTAC	2 cut(s)	109, 250
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	308, 363
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	214, 392
ScrFI	CCNGG	3 cut(s)	12, 42, 281
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	5 cut(s)	13, 187, 194, 327, 385
SfaNI	GCATC	1 cut(s)	288
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	6 cut(s)	16, 87, 222, 255, 337, 406
SsiI	CCGC	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	10, 40, 279
TaaI	ACNGT	1 cut(s)	129
TasI	AATT	6 cut(s)	16, 87, 222, 255, 337, 406
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	308, 363
Tru9I	TTAA	2 cut(s)	308, 363
TseI	GCWGC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	16, 87
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.