Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

16992359 .. 16993828

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1192300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATCTTGTATGAGTGTTTCAAACAATTTATAAATGCTGAAGAAAGGAAGAGAGTAAGAAATCTAGAGAGAGAGAGTGAGAGAATTCAGCTTGAGGAAGAAGAAACGAACTCTGCACTCATTGCTGTGAACCATGATCATTTCTTGACATACCATCTTGACCTTGATGTCGATGGTGAAACCAACTCCTTTGTCAAGAATAATTTTGTGACGAAACAAGCAACAGGCCACAACACACCCAGGAAGAGTTATTGGAATATTGTAAGCGAGACGGCTAAAACTGAGTTAGATGCAAGAATTCGCCTTGGTTTGAAGCCAGCTGACCTGGTTGTGGTAAACCCTAATAAGAAGACCAAACCCGGGAACCCATTTGGCTATCGTTTGATCCCGGGGGCAGTCGCAGGAACCCTATTGTTAGAGGATGATTACCCGCAAATACGCGGCGCTTTCACTAAGTACAATGTGTGGGTTACACCATACAACAAGTCCGAAAAATGGGCAGGAGGAAGATATGTTGATAAAAGTAGAGGAGAGGACACATTAGATGTGTGGAGCAACAGGAATAGGAAAATTGAGAACAAAGATATAGTGTTGTGGTACACAATTGGGTTTCACCACAATCCTTGCCAAGAGGATTTTCCAATGATGCCAACATTGAGTGGTGGATTTGAGCTCAGGCCAACCAATTTCTTTGAGAGCAGTCCTGTTCTTAAAGTTAGAACCATACCTTCTAAGCACCACTCGCCCAATTGCACCGCCAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

256

Amino Acids

29.4

Weight (kDa)

8.32

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	37 - 237	1.3e-62	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AasI	GACNNNNNNGTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	441
AciI	CCGC	3 cut(s)	431, 441, 756
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	84, 297
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	458, 599
AfiI	CCNNNNNNNGG	3 cut(s)	331, 360, 495
AgsI	TTSAA	2 cut(s)	22, 313
AjnI	CCWGG	2 cut(s)	239, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	3 cut(s)	91, 320, 673
AluI	AGCT	3 cut(s)	91, 320, 673
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	379
Ama87I	CYCGRG	2 cut(s)	359, 388
AoxI	GGCC	2 cut(s)	226, 677
ApoI	RAATTY	2 cut(s)	84, 297
AspLEI	GCGC	1 cut(s)	446
AsuC2I	CCSGG	4 cut(s)	360, 361, 389, 390
AsuHPI	GGTGA	2 cut(s)	188, 605
AvaI	CYCGRG	2 cut(s)	359, 388
BanII	GRGCYC	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	675
BccI	CCATC	2 cut(s)	162, 167
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	241, 326
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	4 cut(s)	360, 361, 389, 390
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	2 cut(s)	65, 766
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
Bme1390I	CCNGG	6 cut(s)	241, 326, 360, 361, 389, 390
BmeT110I	CYCGRG	2 cut(s)	359, 388
BmiI	GGNNCC	2 cut(s)	365, 406
BmrFI	CCNGG	6 cut(s)	241, 326, 360, 361, 389, 390
BmsI	GCATC	2 cut(s)	280, 636
BpiI	GAAGAC	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	4 cut(s)	360, 361, 389, 390
BsaJI	CCNNGG	5 cut(s)	239, 304, 359, 388, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 360, 495
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	241, 326
BseDI	CCNNGG	5 cut(s)	239, 304, 359, 388, 389
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	3 cut(s)	331, 360, 495
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	273, 688
BseRI	GAGGAG	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	2 cut(s)	228, 679
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	2 cut(s)	359, 388
BsiSI	CCGG	2 cut(s)	360, 389
BslI	CCNNNNNNNGG	3 cut(s)	331, 360, 495
BsmAI	GTCTC	1 cut(s)	263
BsmBI	CGTCTC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	228, 679
BsoBI	CYCGRG	2 cut(s)	359, 388
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	3, 136, 384
BspACI	CCGC	3 cut(s)	431, 441, 756
BspANI	GGCC	2 cut(s)	228, 679
BspCNI	CTCAG	2 cut(s)	274, 687
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	365, 406
BspPI	GGATC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	120
BssECI	CCNNGG	5 cut(s)	239, 304, 359, 388, 389
BssMI	GATC	3 cut(s)	3, 136, 384
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	241, 326
Bst6I	CTCTTC	2 cut(s)	44, 239
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	282, 453, 674, 732
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	441
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	6, 139, 387
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	3, 136, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 742
BstNI	CCWGG	2 cut(s)	241, 326
BstSCI	CCNGG	6 cut(s)	239, 324, 358, 359, 387, 388
BstUI	CGCG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	228, 679
BtsCI	GGATG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	446
Cfr9I	CCCGGG	2 cut(s)	359, 388
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	457, 598
CspCI	CAANNNNNGTGG	2 cut(s)	605, 640
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	8 cut(s)	91, 228, 275, 316, 320, 375, 673, 679
CviKI_1	RGCY	8 cut(s)	91, 228, 275, 316, 320, 375, 673, 679
CviQI	GTAC	2 cut(s)	457, 598
DdeI	CTNAG	4 cut(s)	282, 453, 674, 732
DpnI	GATC	3 cut(s)	5, 138, 386
DpnII	GATC	3 cut(s)	3, 136, 384
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	2 cut(s)	44, 239
EarI	CTCTTC	2 cut(s)	44, 239
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	2 cut(s)	359, 388
EcoICRI	GAGCTC	1 cut(s)	673
EcoRI	GAATTC	2 cut(s)	84, 297
EcoRII	CCWGG	2 cut(s)	239, 324
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	1 cut(s)	137
FaiI	YATR	8 cut(s)	12, 32, 135, 151, 478, 513, 587, 725
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	1 cut(s)	442
FspBI	CTAG	2 cut(s)	65, 766
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	228, 679
HapII	CCGG	2 cut(s)	360, 389
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HpaII	CCGG	2 cut(s)	360, 389
HphI	GGTGA	2 cut(s)	188, 605
Hpy166II	GTNNAC	3 cut(s)	130, 337, 600
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	4 cut(s)	65, 145, 158, 196
Hpy8I	GTNNAC	3 cut(s)	130, 337, 600
HpyAV	CCTTC	1 cut(s)	738
HpyCH4V	TGCA	3 cut(s)	116, 293, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 742
HpyF3I	CTNAG	4 cut(s)	282, 453, 674, 732
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	3, 136, 384
LmnI	GCTCC	1 cut(s)	552
LweI	GCATC	2 cut(s)	280, 636
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	2 cut(s)	65, 766
MaeIII	GTNAC	2 cut(s)	208, 469
MalI	GATC	3 cut(s)	5, 138, 386
MboI	GATC	3 cut(s)	3, 136, 384
MboII	GAAGA	7 cut(s)	53, 61, 110, 113, 256, 361, 519
MfeI	CAATTG	2 cut(s)	603, 748
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	8 cut(s)	26, 84, 202, 297, 570, 603, 685, 748
MnlI	CCTC	6 cut(s)	88, 412, 497, 521, 526, 625
MseI	TTAA	1 cut(s)	711
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	360, 389
MspR9I	CCNGG	6 cut(s)	241, 326, 360, 361, 389, 390
MunI	CAATTG	2 cut(s)	603, 748
MvaI	CCWGG	2 cut(s)	241, 326
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	122, 742
NciI	CCSGG	4 cut(s)	360, 361, 389, 390
NdeII	GATC	3 cut(s)	3, 136, 384
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	365, 406
NmuCI	GTSAC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	239, 324
PspGI	CCWGG	2 cut(s)	239, 324
PspN4I	GGNNCC	2 cut(s)	365, 406
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	458, 599
RsaNI	GTAC	2 cut(s)	457, 598
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	3 cut(s)	3, 136, 384
ScrFI	CCNGG	6 cut(s)	241, 326, 360, 361, 389, 390
SduI	GDGCHC	1 cut(s)	675
SetI	ASST	6 cut(s)	93, 165, 322, 327, 675, 730
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	280, 636
SmaI	CCCGGG	2 cut(s)	361, 390
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	8 cut(s)	26, 84, 202, 297, 570, 603, 685, 748
SsiI	CCGC	3 cut(s)	431, 441, 756
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	2 cut(s)	65, 766
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	6 cut(s)	239, 324, 358, 359, 387, 388
StyI	CCWWGG	1 cut(s)	304
TaqI	TCGA	1 cut(s)	171
TasI	AATT	8 cut(s)	26, 84, 202, 297, 570, 603, 685, 748
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspMI	CCCGGG	2 cut(s)	359, 388
XapI	RAATTY	2 cut(s)	84, 297
XbaI	TCTAGA	1 cut(s)	64
XmaI	CCCGGG	2 cut(s)	359, 388
XspI	CTAG	2 cut(s)	65, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.