Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

34674179 .. 34674332

Gene Structure 154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 154 bp

ATGGGGCCACTGGAGGGGATATTTTTGGTTGTTGATCTTGATGAATTGAAGATAGTTGAATACTATGGTAGAGTTAGGGTTCCTGTGCCAATATGGGAGGGGACCGTGTACCGATTGTCGAAGCAAAAACCGCCATTCAGTCCCCCACTGCAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

51

Amino Acids

5.87

Weight (kDa)

6.09

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	49, 59
AoxI	GGCC	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	5, 102
AvaII	GGWCC	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	5, 102
BmiI	GGNNCC	3 cut(s)	6, 81, 103
BpmI	CTGGAG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	7
BslFI	GGGAC	2 cut(s)	115, 126
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	115, 126
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	6, 81, 103
BsrI	ACTGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	106
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	7
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	8, 146
Cfr13I	GGNCC	2 cut(s)	5, 102
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	1 cut(s)	7
CviKI_1	RGCY	1 cut(s)	7
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	102
FaiI	YATR	2 cut(s)	66, 94
FaqI	GGGAC	2 cut(s)	115, 126
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	1 cut(s)	96
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	61
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	2 cut(s)	7, 91
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	34
NlaIV	GGNNCC	3 cut(s)	6, 81, 103
PspN4I	GGNNCC	3 cut(s)	6, 81, 103
PspPI	GGNCC	2 cut(s)	5, 102
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	5, 102
SgeI	CNNG	4 cut(s)	23, 50, 95, 118
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	44
TscAI	CASTG	2 cut(s)	15, 153
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	15, 153
VpaK11BI	GGWCC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.