Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

40608106 .. 40619610

Gene Structure 11505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGACCCAACCGAGGACTGGTACTACAAAACCTTCTTCGATTGTGGAGAATTCGGGTTAGGCCTCTCAACAGTCTCACTCGAGCCACTGACCGATTGCCCAAGCAATGCCAAGTTCATAGATGGTTACTATGCTGCCGGAGATGGCACGCCAGTGCAGATATCGAATGCCATTTGCATCTTTGAACGACATGCAGGCAACATCGTGTGGCGTCACACAGAAGTTACTATCCCAGATGAAGTGGTAACGGAGGCCAGGGCCGATGTGACTCTGGTTGTGAGGATGGTTTCCACCATAGGCAACTATGACTATATTATTGATTGGGAATTCAAACCAAGTGGTTCCATTAAAATAGAGGTTGGATTGACAGGGGTGCTGGAAATTGCAGCGGCTAAATATACCCACATAAACCAAATAAAGGAGGAAGTTTATGGTACGTTGGTGGTAGATAACTCCATTGCAGTAAACCATGATCACTTCTTGACCTACCATATTGACCTTGATGTGGATGGTGAAGCCAACTCCTTTGTGAAGAACAATTTCGTGACAAAACGAGTTACAGACCCAAACATACCAAGGAAGAGTTACTGGAATGTTGTAAGCGAAACCGCTAAGACGGAATCAGATGCACGGATTCACCTAGGCTTGAAGCCAGCCGACCTGGTTGTGGTAAACCCTAATAAGAAGACCAGACCCGGGAACCCTATTGGCTACCGTTTGATTCCAGGGTCAGTTGTAAATCCCCTTCTGGTGGAGGATGACTACCCACAAATTCGTGGTGCTTTCACCAACTATAATGTTTGGGTTACACCGTACAACAAATCTGAAAAATGGGCGGGAGGACCATATGTTGATCAAAGCCGAGGAGACGATACCTTAGCAGTCTGGAGCAAAAGGAATAGGAAGATTGAGAACAAGGACATAGTGTTGTGGTACACGGTTGGGTTTCACCACAATCCTTGCCTAGAGGACTTTCCGATGATGCCAACATTGAGCGGTGGATTTGAGCTCCGGCCAGTTAATTTCTTTGAGAGCAGTCCAGTTCTTAAAGTTAGAACAACACCTCCTCCTAAGCATGTATCGTTGCCTAATTGCACCAAACAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

369

Amino Acids

41.46

Weight (kDa)

5.51

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	1 - 349	2e-116	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	996
AciI	CCGC	4 cut(s)	389, 609, 836, 996
AcoI	YGGCCR	1 cut(s)	1013
AcsI	RAATTY	3 cut(s)	50, 326, 771
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	4 cut(s)	23, 436, 815, 935
AfiI	CCNNNNNNNGG	7 cut(s)	13, 18, 418, 505, 667, 696, 751
AgsI	TTSAA	3 cut(s)	185, 331, 649
AjnI	CCWGG	3 cut(s)	254, 660, 724
AleI	CACNNNNGTG	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	1048, 1080
AluBI	AGCT	1 cut(s)	1009
AluI	AGCT	1 cut(s)	1009
Alw21I	GWGCWC	1 cut(s)	1011
Alw26I	GTCTC	2 cut(s)	79, 861
Ama87I	CYCGRG	2 cut(s)	80, 695
AoxI	GGCC	4 cut(s)	61, 252, 258, 1013
ApeKI	GCWGC	2 cut(s)	134, 386
ApoI	RAATTY	3 cut(s)	50, 326, 771
Asp700I	GAANNNNTTC	1 cut(s)	539
AspA2I	CCTAGG	1 cut(s)	640
AspS9I	GGNCC	3 cut(s)	4, 258, 842
AsuC2I	CCSGG	2 cut(s)	696, 697
AsuHPI	GGTGA	4 cut(s)	524, 629, 778, 941
AvaI	CYCGRG	2 cut(s)	80, 695
AvaII	GGWCC	2 cut(s)	4, 842
AvrII	CCTAGG	1 cut(s)	640
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BanII	GRGCYC	1 cut(s)	1011
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	1011
BbvI	GCAGC	2 cut(s)	121, 398
BccI	CCATC	4 cut(s)	116, 137, 277, 503
BciT130I	CCWGG	3 cut(s)	256, 662, 726
BclI	TGATCA	2 cut(s)	472, 853
BcnI	CCSGG	2 cut(s)	696, 697
BcoDI	GTCTC	2 cut(s)	79, 861
BfaI	CTAG	3 cut(s)	641, 965, 1108
BisI	GCNGC	3 cut(s)	135, 387, 390
BlnI	CCTAGG	1 cut(s)	640
BlsI	GCNGC	3 cut(s)	136, 388, 391
Bme1390I	CCNGG	5 cut(s)	256, 662, 696, 697, 726
Bme18I	GGWCC	2 cut(s)	4, 842
BmeT110I	CYCGRG	2 cut(s)	80, 695
BmgT120I	GGNCC	3 cut(s)	4, 258, 842
BmiI	GGNNCC	3 cut(s)	6, 343, 701
BmrFI	CCNGG	5 cut(s)	256, 662, 696, 697, 726
BmsI	GCATC	3 cut(s)	186, 616, 972
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	907
Bpu10I	CCTNAGC	2 cut(s)	877, 1071
BpuMI	CCSGG	2 cut(s)	696, 697
BsaHI	GRCGYC	1 cut(s)	211
BsaJI	CCNNGG	7 cut(s)	12, 255, 575, 640, 695, 725, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	1048, 1051, 1078, 1081
Bsc4I	CCNNNNNNNGG	7 cut(s)	13, 18, 418, 505, 667, 696, 751
Bse1I	ACTGG	5 cut(s)	23, 152, 593, 1016, 1040
Bse3DI	GCAATG	2 cut(s)	112, 456
BseBI	CCWGG	3 cut(s)	256, 662, 726
BseDI	CCNNGG	7 cut(s)	12, 255, 575, 640, 695, 725, 862
BseGI	GGATG	3 cut(s)	288, 514, 763
BseLI	CCNNNNNNNGG	7 cut(s)	13, 18, 418, 505, 667, 696, 751
BseMI	GCAATG	2 cut(s)	112, 456
BseNI	ACTGG	5 cut(s)	23, 152, 593, 1016, 1040
BseRI	GAGGAG	2 cut(s)	879, 1056
BseXI	GCAGC	2 cut(s)	121, 398
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	4 cut(s)	63, 254, 260, 1015
BsiHKAI	GWGCWC	1 cut(s)	1011
BsiHKCI	CYCGRG	2 cut(s)	80, 695
BsiSI	CCGG	3 cut(s)	138, 696, 1012
BslI	CCNNNNNNNGG	7 cut(s)	13, 18, 418, 505, 667, 696, 751
BsmAI	GTCTC	2 cut(s)	79, 861
BsmBI	CGTCTC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	63, 254, 260, 1015
BsoBI	CYCGRG	2 cut(s)	80, 695
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp143I	GATC	2 cut(s)	472, 853
BspACI	CCGC	4 cut(s)	389, 609, 836, 996
BspANI	GGCC	4 cut(s)	63, 254, 260, 1015
BspLI	GGNNCC	3 cut(s)	6, 343, 701
BsrBI	CCGCTC	1 cut(s)	996
BsrDI	GCAATG	2 cut(s)	112, 456
BsrI	ACTGG	5 cut(s)	23, 152, 593, 1016, 1040
BssECI	CCNNGG	7 cut(s)	12, 255, 575, 640, 695, 725, 862
BssMI	GATC	2 cut(s)	472, 853
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	2 cut(s)	575, 640
Bst2UI	CCWGG	3 cut(s)	256, 662, 726
Bst4CI	ACNGT	4 cut(s)	73, 716, 813, 940
Bst6I	CTCTTC	1 cut(s)	575
BstACI	GRCGYC	1 cut(s)	211
BstC8I	GCNNGC	3 cut(s)	149, 196, 654
BstDEI	CTNAG	3 cut(s)	612, 877, 1071
BstF5I	GGATG	3 cut(s)	288, 514, 763
BstKTI	GATC	2 cut(s)	475, 856
BstMAI	GTCTC	2 cut(s)	79, 861
BstMBI	GATC	2 cut(s)	472, 853
BstNI	CCWGG	3 cut(s)	256, 662, 726
BstNSI	RCATGY	2 cut(s)	194, 1079
BstSCI	CCNGG	5 cut(s)	254, 660, 694, 695, 724
BstV1I	GCAGC	2 cut(s)	121, 398
BstV2I	GAAGAC	1 cut(s)	692
BsuRI	GGCC	4 cut(s)	63, 254, 260, 1015
BtsCI	GGATG	3 cut(s)	288, 514, 763
BtsIMutI	CAGTG	2 cut(s)	86, 159
Cac8I	GCNNGC	3 cut(s)	149, 196, 654
Cfr13I	GGNCC	3 cut(s)	4, 258, 842
Cfr9I	CCCGGG	1 cut(s)	695
CseI	GACGC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	22, 435, 814, 934
CspCI	CAANNNNNGTGG	4 cut(s)	319, 354, 941, 976
CviAII	CATG	3 cut(s)	191, 470, 1076
CviQI	GTAC	4 cut(s)	22, 435, 814, 934
DdeI	CTNAG	3 cut(s)	612, 877, 1071
DpnI	GATC	2 cut(s)	474, 855
DpnII	GATC	2 cut(s)	472, 853
EaeI	YGGCCR	1 cut(s)	1013
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	1009
Eco130I	CCWWGG	2 cut(s)	575, 640
Eco147I	AGGCCT	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	1011
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	4, 842
Eco53kI	GAGCTC	1 cut(s)	1009
Eco88I	CYCGRG	2 cut(s)	80, 695
EcoICRI	GAGCTC	1 cut(s)	1009
EcoRI	GAATTC	2 cut(s)	50, 326
EcoRII	CCWGG	3 cut(s)	254, 660, 724
EcoRV	GATATC	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	575, 640
EcoT38I	GRGCYC	1 cut(s)	1011
ErhI	CCWWGG	2 cut(s)	575, 640
Esp3I	CGTCTC	1 cut(s)	861
FaeI	CATG	3 cut(s)	194, 473, 1079
FatI	CATG	3 cut(s)	190, 469, 1075
FauI	CCCGC	1 cut(s)	829
FauNDI	CATATG	1 cut(s)	847
FbaI	TGATCA	2 cut(s)	472, 853
Fnu4HI	GCNGC	3 cut(s)	135, 387, 390
FokI	GGATG	3 cut(s)	295, 521, 770
FriOI	GRGCYC	1 cut(s)	1011
Fsp4HI	GCNGC	3 cut(s)	135, 387, 390
FspBI	CTAG	3 cut(s)	641, 965, 1108
GluI	GCNGC	3 cut(s)	135, 387, 390
GsuI	CTGGAG	1 cut(s)	907
HaeIII	GGCC	4 cut(s)	63, 254, 260, 1015
HapII	CCGG	3 cut(s)	138, 696, 1012
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	194, 473, 1079
HinfI	GANTC	4 cut(s)	268, 620, 634, 721
HpaII	CCGG	3 cut(s)	138, 696, 1012
HphI	GGTGA	4 cut(s)	524, 629, 778, 941
Hpy166II	GTNNAC	3 cut(s)	466, 673, 936
Hpy188I	TCNGA	3 cut(s)	625, 826, 978
Hpy188III	TCNNGA	3 cut(s)	481, 544, 886
Hpy8I	GTNNAC	3 cut(s)	466, 673, 936
HpyAV	CCTTC	2 cut(s)	43, 755
HpyCH4III	ACNGT	4 cut(s)	73, 716, 813, 940
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	7 cut(s)	157, 177, 194, 386, 461, 629, 1095
HpyF3I	CTNAG	3 cut(s)	612, 877, 1071
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	194, 473, 1079
Ksp22I	TGATCA	2 cut(s)	472, 853
Kzo9I	GATC	2 cut(s)	472, 853
LmnI	GCTCC	2 cut(s)	888, 1014
Lsp1109I	GCAGC	2 cut(s)	121, 398
LweI	GCATC	3 cut(s)	186, 616, 972
MabI	ACCWGGT	1 cut(s)	660
MaeI	CTAG	3 cut(s)	641, 965, 1108
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	9 cut(s)	125, 212, 223, 244, 265, 544, 556, 584, 805
MalI	GATC	2 cut(s)	474, 855
MbiI	CCGCTC	1 cut(s)	996
MboI	GATC	2 cut(s)	472, 853
MboII	GAAGA	5 cut(s)	28, 544, 592, 697, 916
MhlI	GDGCHC	1 cut(s)	1011
MluCI	AATT	7 cut(s)	50, 326, 381, 538, 771, 1021, 1090
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	3 cut(s)	348, 1020, 1047
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	3 cut(s)	138, 696, 1012
MspR9I	CCNGG	5 cut(s)	256, 662, 696, 697, 726
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	3 cut(s)	256, 662, 726
NciI	CCSGG	2 cut(s)	696, 697
NdeI	CATATG	1 cut(s)	847
NdeII	GATC	2 cut(s)	472, 853
NlaIII	CATG	3 cut(s)	194, 473, 1079
NlaIV	GGNNCC	3 cut(s)	6, 343, 701
NmeAIII	GCCGAG	1 cut(s)	887
NmuCI	GTSAC	3 cut(s)	212, 265, 544
NspI	RCATGY	2 cut(s)	194, 1079
OliI	CACNNNNGTG	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	3 cut(s)	620, 634, 721
PkrI	GCNGC	3 cut(s)	136, 388, 391
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	1011
Psp6I	CCWGG	3 cut(s)	254, 660, 724
PspGI	CCWGG	3 cut(s)	254, 660, 724
PspN4I	GGNNCC	3 cut(s)	6, 343, 701
PspPI	GGNCC	3 cut(s)	4, 258, 842
PspXI	VCTCGAGB	1 cut(s)	80
RsaI	GTAC	4 cut(s)	23, 436, 815, 935
RsaNI	GTAC	4 cut(s)	22, 435, 814, 934
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	1011
SaqAI	TTAA	3 cut(s)	348, 1020, 1047
SatI	GCNGC	3 cut(s)	135, 387, 390
Sau3AI	GATC	2 cut(s)	472, 853
Sau96I	GGNCC	3 cut(s)	4, 258, 842
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	5 cut(s)	256, 662, 696, 697, 726
SduI	GDGCHC	1 cut(s)	1011
SexAI	ACCWGGT	1 cut(s)	660
SfaNI	GCATC	3 cut(s)	186, 616, 972
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	4, 842
SlaI	CTCGAG	1 cut(s)	80
SmaI	CCCGGG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	7 cut(s)	50, 326, 381, 538, 771, 1021, 1090
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	4 cut(s)	389, 609, 836, 996
SspMI	CTAG	3 cut(s)	641, 965, 1108
SstI	GAGCTC	1 cut(s)	1011
StuI	AGGCCT	1 cut(s)	63
StyD4I	CCNGG	5 cut(s)	254, 660, 694, 695, 724
StyI	CCWWGG	2 cut(s)	575, 640
TaaI	ACNGT	4 cut(s)	73, 716, 813, 940
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	3 cut(s)	39, 81, 164
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	7 cut(s)	50, 326, 381, 538, 771, 1021, 1090
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	620, 634, 721
Tru1I	TTAA	3 cut(s)	348, 1020, 1047
Tru9I	TTAA	3 cut(s)	348, 1020, 1047
TscAI	CASTG	2 cut(s)	93, 159
TseFI	GTSAC	3 cut(s)	212, 265, 544
TseI	GCWGC	2 cut(s)	134, 386
Tsp45I	GTSAC	3 cut(s)	212, 265, 544
TspDTI	ATGAA	2 cut(s)	106, 252
TspGWI	ACGGA	3 cut(s)	263, 632, 646
TspMI	CCCGGG	1 cut(s)	695
TspRI	CASTG	2 cut(s)	93, 159
VpaK11BI	GGWCC	2 cut(s)	4, 842
XapI	RAATTY	3 cut(s)	50, 326, 771
XceI	RCATGY	2 cut(s)	194, 1079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	80
XmaI	CCCGGG	1 cut(s)	695
XmaJI	CCTAGG	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	3 cut(s)	641, 965, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.