Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

23804817 .. 23805521

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGGCCTATTGAGGGAATATTGTTGGTGGTTGATCTTGATCAAATGAAAATAGTCGAATACCATGACAGAGTTAGGGTTCCGCTGCCAAAATCTGAGGGAACAGAGTACCGGCTTTCAAAGCAGAACCCACCGTTCTGTCCACGACTAAACGGTTTTACCATCGTGCAACGGGAAGAACCCGGATTCAAGATTGATGGGCACAAAATTAGCAACCACATCGCCAACGTCGGCCTCCGGAACCTCGACCTCCTCCTCGGCCTCGAGAACCGCGTCAAATACACCGTCGTCGAGGTCCTCAACGGCGACTACCTCCTCTCGAGATTAGGATCTGCTGCCTTGATCCGATGTTGGAATCGCTGCCACAAAAGCGTCGTTTGGTGCTGCGACATCTCTATTTGGCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

137

Amino Acids

15.64

Weight (kDa)

8.65

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	237
AciI	CCGC	2 cut(s)	83, 271
AclWI	GGATC	2 cut(s)	337, 337
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	120, 190
AlwI	GGATC	2 cut(s)	337, 337
Ama87I	CYCGRG	2 cut(s)	263, 319
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	3 cut(s)	5, 232, 259
ApeKI	GCWGC	4 cut(s)	85, 335, 360, 384
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	183
AvaI	CYCGRG	2 cut(s)	263, 319
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	72, 322, 347, 371
BccI	CCATC	2 cut(s)	170, 191
BceAI	ACGGC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	183
BisI	GCNGC	4 cut(s)	86, 336, 361, 385
BlsI	GCNGC	4 cut(s)	87, 337, 362, 386
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	2 cut(s)	263, 319
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	81, 242
BmrFI	CCNGG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	183
BsaBI	GATNNNNATC	2 cut(s)	39, 328
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	111
Bse8I	GATNNNNATC	2 cut(s)	39, 328
BseAI	TCCGGA	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	256
BseJI	GATNNNNATC	2 cut(s)	39, 328
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	3 cut(s)	242, 245, 305
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	4 cut(s)	72, 322, 347, 371
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	7, 234, 261
BsiHKCI	CYCGRG	2 cut(s)	263, 319
BsiSI	CCGG	3 cut(s)	112, 183, 238
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	3 cut(s)	7, 234, 261
BsoBI	CYCGRG	2 cut(s)	263, 319
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	34, 40, 329, 342
BspACI	CCGC	2 cut(s)	83, 271
BspANI	GGCC	3 cut(s)	7, 234, 261
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	81, 242
BspPI	GGATC	2 cut(s)	337, 337
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	34, 40, 329, 342
Bst4CI	ACNGT	3 cut(s)	135, 155, 286
BstDEI	CTNAG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	37, 43, 332, 345
BstMBI	GATC	4 cut(s)	34, 40, 329, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 369
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	4 cut(s)	72, 322, 347, 371
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	7, 234, 261
BtgZI	GCGATG	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	2 cut(s)	262, 361
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	7, 115, 234, 261, 403
CviKI_1	RGCY	5 cut(s)	7, 115, 234, 261, 403
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	4 cut(s)	36, 42, 331, 344
DpnII	GATC	4 cut(s)	34, 40, 329, 342
Eco147I	AGGCCT	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	2 cut(s)	263, 319
EcoO109I	RGGNCCY	1 cut(s)	295
FaeI	CATG	1 cut(s)	68
FaiI	YATR	1 cut(s)	66
FatI	CATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	4 cut(s)	86, 336, 361, 385
Fsp4HI	GCNGC	4 cut(s)	86, 336, 361, 385
GluI	GCNGC	4 cut(s)	86, 336, 361, 385
HaeIII	GGCC	3 cut(s)	7, 234, 261
HapII	CCGG	3 cut(s)	112, 183, 238
HgaI	GACGC	2 cut(s)	262, 361
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	186, 355
HpaII	CCGG	3 cut(s)	112, 183, 238
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	97, 347
Hpy188III	TCNNGA	6 cut(s)	38, 190, 238, 265, 319, 321
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	4 cut(s)	233, 290, 293, 377
HpyCH4III	ACNGT	3 cut(s)	135, 155, 286
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 369
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	34, 40, 329, 342
LpnPI	CCDG	3 cut(s)	125, 196, 251
Lsp1109I	GCAGC	4 cut(s)	72, 322, 347, 371
MaeII	ACGT	1 cut(s)	228
MalI	GATC	4 cut(s)	36, 42, 331, 344
MboI	GATC	4 cut(s)	34, 40, 329, 342
MboII	GAAGA	1 cut(s)	188
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	207, 406
MmeI	TCCRAC	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	3 cut(s)	112, 183, 238
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	121, 369
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	4 cut(s)	34, 40, 329, 342
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	81, 242
NmeAIII	GCCGAG	1 cut(s)	237
PaeR7I	CTCGAG	2 cut(s)	263, 319
PceI	AGGCCT	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	186, 355
PkrI	GCNGC	4 cut(s)	87, 337, 362, 386
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	81, 242
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	4 cut(s)	86, 336, 361, 385
Sau3AI	GATC	4 cut(s)	34, 40, 329, 342
Sau96I	GGNCC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	5 cut(s)	231, 246, 252, 297, 315
Sfr274I	CTCGAG	2 cut(s)	263, 319
SinI	GGWCC	1 cut(s)	295
SlaI	CTCGAG	2 cut(s)	263, 319
SmlI	CTYRAG	2 cut(s)	263, 319
SmoI	CTYRAG	2 cut(s)	263, 319
Sse9I	AATT	2 cut(s)	207, 406
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	83, 271
SspI	AATATT	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	135, 155, 286
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	5 cut(s)	57, 246, 264, 291, 320
TasI	AATT	2 cut(s)	207, 406
TfiI	GAWTC	2 cut(s)	186, 355
TseI	GCWGC	4 cut(s)	85, 335, 360, 384
TspDTI	ATGAA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	295
XhoI	CTCGAG	2 cut(s)	263, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.