Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

23570440 .. 23571622

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0141900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATTCCTCAAACTGAAGGCTTGTTTGTGAACTTGACTCAGGACTATGATACACAATTCCAAGAAGGTGGAGGTCTTTCAGATGATGATGAATTCATGAGGATGATGATTACAAACAATACCAACATTGGAAGGCTGGAATCATCCCCACCTACCAACATGAATGAGACGTTAAGCTCATCTGACATTCCAAATGTTGGCAATGAGATGTCAACTGAACCGGGAGTAAATGTCGATGAGAGCAGTGCACAAATTAGACCGCTTAACATTCCAAATGTTGGCAATGAGGTGCCAACTGAACCTGGAGTAAATGTCGATAAGAGCGGTGCACAAAGTAGACCAAGTAAGAAGCGTAAGCGAAAGACGCGAAAAACTCGACGAAAGAACAAGCCCAAGTTTAGATTACAAGGTAGAGAAAAATTACAATTTAATGCCATTGGGCAGCCTGTTACCCCAGATGATAAGGTAGCACAATTAGCTATCTTGCAAAACAGCTGCAAAAACACTACCCCAACACCAACAATTCTCAATGGATCACCATCAGCCTTGCCTACAATACGCCGCAACTCATCAACCCTGACAACCACAGAAGAAGAAATAGAGTACGCTTTTGTAACAGAGAGAAGCCAAAACGACGCCGTCGTGAGCCCAGATAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

220

Amino Acids

24.33

Weight (kDa)

6.43

Isoelectric Point (pI)

63.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	2 cut(s)	197, 278
AccBSI	CCGCTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	1 cut(s)	367
AciI	CCGC	3 cut(s)	260, 324, 562
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	197, 278
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	177, 479, 495
AluI	AGCT	3 cut(s)	177, 479, 495
Alw21I	GWGCWC	2 cut(s)	250, 331
Alw26I	GTCTC	1 cut(s)	161
Alw44I	GTGCAC	2 cut(s)	246, 327
AlwI	GGATC	1 cut(s)	541
ApaLI	GTGCAC	2 cut(s)	246, 327
ApeKI	GCWGC	2 cut(s)	442, 495
ApoI	RAATTY	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	528
BaeGI	GKGCMC	2 cut(s)	250, 331
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	650
Bbv12I	GWGCWC	2 cut(s)	250, 331
BbvI	GCAGC	2 cut(s)	454, 482
BccI	CCATC	1 cut(s)	547
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	443, 496, 562
BlsI	GCNGC	3 cut(s)	444, 497, 563
Bme1390I	CCNGG	2 cut(s)	222, 303
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	222, 303
BpmI	CTGGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	538
BsaHI	GRCGYC	1 cut(s)	636
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 278
Bse3DI	GCAATG	2 cut(s)	208, 289
Bse8I	GATNNNNATC	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	108, 143
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	197, 278
BseMI	GCAATG	2 cut(s)	208, 289
BseMII	CTCAG	1 cut(s)	53
BseSI	GKGCMC	2 cut(s)	250, 331
BseXI	GCAGC	2 cut(s)	454, 482
Bsh1236I	CGCG	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	250, 331
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	197, 278
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	250, 331, 650
Bsp143I	GATC	1 cut(s)	533
BspACI	CCGC	3 cut(s)	260, 324, 562
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	208, 289
BssMI	GATC	1 cut(s)	533
BssNI	GRCGYC	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	636
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	108, 143
BstFNI	CGCG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 476
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	220, 301
BstSLI	GKGCMC	2 cut(s)	250, 331
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	454, 482
BstXI	CCANNNNNNTGG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	108, 143
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	96
CseI	GACGC	2 cut(s)	373, 644
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	2 cut(s)	97, 160
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	650
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	2 cut(s)	100, 163
FaiI	YATR	3 cut(s)	48, 98, 161
FatI	CATG	2 cut(s)	96, 159
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	443, 496, 562
FokI	GGATG	2 cut(s)	115, 130
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	3 cut(s)	443, 496, 562
GluI	GCNGC	3 cut(s)	443, 496, 562
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	2 cut(s)	373, 644
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	2 cut(s)	100, 163
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	4, 37, 140
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	5 cut(s)	31, 213, 248, 329, 338
Hpy188I	TCNGA	2 cut(s)	82, 184
Hpy188III	TCNNGA	3 cut(s)	41, 97, 643
Hpy8I	GTNNAC	5 cut(s)	31, 213, 248, 329, 338
Hpy99I	CGWCG	3 cut(s)	381, 638, 644
HpyAV	CCTTC	3 cut(s)	11, 59, 126
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	248, 329, 487, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 476
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	2 cut(s)	100, 163
Kzo9I	GATC	1 cut(s)	533
LpnPI	CCDG	8 cut(s)	26, 122, 234, 288, 315, 459, 468, 590
Lsp1109I	GCAGC	2 cut(s)	454, 482
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	448, 613
MalI	GATC	1 cut(s)	535
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	1 cut(s)	533
MboII	GAAGA	2 cut(s)	602, 605
MhlI	GDGCHC	3 cut(s)	250, 331, 650
MluCI	AATT	7 cut(s)	56, 92, 252, 419, 425, 473, 522
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	18, 65, 93, 280
MseI	TTAA	3 cut(s)	173, 264, 429
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	222, 303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	364, 476
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	533
NlaIII	CATG	2 cut(s)	100, 163
NlaIV	GGNNCC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	4, 140
PflFI	GACNNNGTC	1 cut(s)	638
PflMI	CCANNNNNTGG	2 cut(s)	197, 278
PkrI	GCNGC	3 cut(s)	444, 497, 563
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	173, 264, 429
SatI	GCNGC	3 cut(s)	443, 496, 562
Sau3AI	GATC	1 cut(s)	533
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	222, 303
SduI	GDGCHC	3 cut(s)	250, 331, 650
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	7 cut(s)	56, 92, 252, 419, 425, 473, 522
SsiI	CCGC	3 cut(s)	260, 324, 562
StyD4I	CCNGG	2 cut(s)	220, 301
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	3 cut(s)	234, 315, 376
TasI	AATT	7 cut(s)	56, 92, 252, 419, 425, 473, 522
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	4, 140
Tru1I	TTAA	3 cut(s)	173, 264, 429
Tru9I	TTAA	3 cut(s)	173, 264, 429
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	442, 495
TspDTI	ATGAA	3 cut(s)	85, 105, 176
TspRI	CASTG	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	638
Van91I	CCANNNNNTGG	2 cut(s)	197, 278
VneI	GTGCAC	2 cut(s)	246, 327
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.