Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

41361004 .. 41362631

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTCTGGATGTCCATACTCCATAGCTTCAAGAATGGCATCAACTTTCTCATTATTCTTCTCCATTTTCATCGTCACCTTCTCACCAACCTTGTGCCTGAACCAGTACCATCCCCTAGACCCTCTAACCCAGTCGGAGTTCAATCAGATCAAATCCATAATTCAAAGCTCATACCCTTCTCAAAACCTCACGTTCCAATATGTCGGGTTAGACGAACCAGAAAAGTCCACTGTCCTCTTATGGAATTCCAAATCCACAGCCAAATCCTACCCTCCTCGCCGAGCCTCAGTTGTTACAAGACTAAACAAACAAACCCACGAGATTATAGTCGATTTGTCAACCCATTCCATTCTCTCTAGTAAAGTTCACAAGGGAAATGGCTACCCTCTGCTAACCGTAGACGAACAAACACTTGCAAATGAGTTGCCTTTTAATTATCAACCATTCATTCAATCCATTAAAAGGAGAGGGCTTAATATATCCCAAGTTGTGTGTAGCGGTTTTACAGTTGGTTGGTTCGGAGAGGGAAAGACTAGAAGAATAATAAAGATTAATTCCTTTTACACAAATGGGACAGTGAACTTGTTTGTGAGGCCAGTGGAGGGAATAACGTTGGTTGTTGATCTTGATATAATGAAGATAGTTCAATACAGTGACAGGGCTGTAGTTCCGGTGCCAAAGGGAGAGGGAACCGAGTACCGGGCCTCAAAGCAGAAGCGGCCTTTTGGTCCACGACTAAATGGTGCTTCAGTTTTGTCTGGGGGAGAAGGGTTCGTCCTTGACGGGAACATTATCAGATGGGCCAACTGGGTTTTTCATCTCGGATTTGATGTTCGAACGGGAACGATTATATCTCAAGCATCAATTTACGATCTGGACAAGAAGAAATACAGGAGAGTTTTGTATAGAGGGTTTGTCTCAGAGCTGTTTGTGCCTTACATGAACCCAACTGCTGACTGGTACTACAAAACCTTCTTTGACAATGGAGAGTTTGGGTTCGGCCAAACTACTGTCTCACTTGAACCATTGACTGATTGTCCTAACAATGCAAAGCTCATAGATGCCTACTATGCTTCACAAGAAGGCACACCTGTGAAGATATCGAATGCTATATGTATCTTTGAACGGCATGCAGGAAACATCTTGTGGCGTCACACAGAAGTTACCATCCCAGATGAAGTGATAACGGAGGTGAGGTCGGAGGTGACCCTAGTGGTGAGGATGATTGCAGTTGTGGGCAACTATGACTACATAATCGATTGGGAATTCAAACCAAGTGGATCCATAAAACTTGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

433

Amino Acids

48.91

Weight (kDa)

8.6

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	37 - 121	1.4e-19	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	129 - 225	1.8e-21	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	254 - 433	3.7e-60	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	2 cut(s)	498, 718
AclI	AACGTT	1 cut(s)	611
AclWI	GGATC	2 cut(s)	1275, 1288
AcoI	YGGCCR	1 cut(s)	1000
AcsI	RAATTY	2 cut(s)	244, 1265
AcuI	CTGAAG	1 cut(s)	732
AcyI	GRCGYC	1 cut(s)	1150
AfaI	GTAC	3 cut(s)	107, 698, 962
AfiI	CCNNNNNNNGG	3 cut(s)	462, 602, 699
AgsI	TTSAA	8 cut(s)	30, 142, 164, 452, 647, 1022, 1124, 1270
AhdI	GACNNNNNGTC	1 cut(s)	1035
AleI	CACNNNNGTG	1 cut(s)	1091
AloI	GAACNNNNNNTCC	2 cut(s)	816, 848
AluBI	AGCT	4 cut(s)	26, 168, 925, 1054
AluI	AGCT	4 cut(s)	26, 168, 925, 1054
Alw26I	GTCTC	2 cut(s)	922, 1018
AlwI	GGATC	2 cut(s)	1275, 1288
AoxI	GGCC	5 cut(s)	593, 702, 719, 801, 1000
ApoI	RAATTY	2 cut(s)	244, 1265
AseI	ATTAAT	1 cut(s)	552
AspS9I	GGNCC	3 cut(s)	702, 728, 801
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	5 cut(s)	67, 75, 1204, 1216, 1228
AsuII	TTCGAA	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	728
BamHI	GGATCC	1 cut(s)	1280
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	317
BccI	CCATC	3 cut(s)	117, 792, 1175
BceAI	ACGGC	1 cut(s)	1142
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	2 cut(s)	922, 1018
BfaI	CTAG	4 cut(s)	116, 357, 534, 1211
BfmI	CTRYAG	1 cut(s)	663
BisI	GCNGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	720
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	1 cut(s)	728
BmeRI	GACNNNNNGTC	1 cut(s)	1035
BmgT120I	GGNCC	3 cut(s)	702, 728, 801
BmiI	GGNNCC	3 cut(s)	675, 691, 1282
BmrFI	CCNGG	1 cut(s)	701
BmrI	ACTGGG	2 cut(s)	124, 817
BmsI	GCATC	3 cut(s)	47, 869, 1051
BmuI	ACTGGG	2 cut(s)	124, 817
Bpu14I	TTCGAA	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	701
Bsa29I	ATCGAT	1 cut(s)	1257
BsaHI	GRCGYC	1 cut(s)	1150
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	1181, 1211
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 602, 699
Bse1I	ACTGG	5 cut(s)	103, 130, 596, 812, 962
BseCI	ATCGAT	1 cut(s)	1257
BseGI	GGATG	4 cut(s)	14, 109, 1167, 1227
BseLI	CCNNNNNNNGG	3 cut(s)	462, 602, 699
BseMII	CTCAG	2 cut(s)	300, 933
BseNI	ACTGG	5 cut(s)	103, 130, 596, 812, 962
BseRI	GAGGAG	1 cut(s)	264
BshFI	GGCC	5 cut(s)	595, 704, 721, 803, 1002
BshNI	GGYRCC	1 cut(s)	673
BshVI	ATCGAT	1 cut(s)	1257
BsiSI	CCGG	2 cut(s)	671, 700
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	462, 602, 699
BsmAI	GTCTC	2 cut(s)	922, 1018
BsmFI	GGGAC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	5 cut(s)	595, 704, 721, 803, 1002
Bsp119I	TTCGAA	1 cut(s)	835
Bsp143I	GATC	4 cut(s)	147, 622, 871, 1280
BspACI	CCGC	2 cut(s)	498, 718
BspANI	GGCC	5 cut(s)	595, 704, 721, 803, 1002
BspCNI	CTCAG	2 cut(s)	299, 932
BspDI	ATCGAT	1 cut(s)	1257
BspLI	GGNNCC	3 cut(s)	675, 691, 1282
BspPI	GGATC	2 cut(s)	1275, 1288
BspT104I	TTCGAA	1 cut(s)	835
BspT107I	GGYRCC	1 cut(s)	673
BsrI	ACTGG	5 cut(s)	103, 130, 596, 812, 962
BssMI	GATC	4 cut(s)	147, 622, 871, 1280
BssNI	GRCGYC	1 cut(s)	1150
BssSI	CACGAG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	317
Bst4CI	ACNGT	6 cut(s)	232, 397, 508, 577, 653, 1012
BstACI	GRCGYC	1 cut(s)	1150
BstBI	TTCGAA	1 cut(s)	835
BstC8I	GCNNGC	1 cut(s)	1131
BstDEI	CTNAG	2 cut(s)	286, 919
BstEII	GGTNACC	1 cut(s)	1204
BstF5I	GGATG	4 cut(s)	14, 109, 1167, 1227
BstKTI	GATC	4 cut(s)	150, 625, 874, 1283
BstMAI	GTCTC	2 cut(s)	922, 1018
BstMBI	GATC	4 cut(s)	147, 622, 871, 1280
BstMWI	GCNNNNNNNGC	3 cut(s)	718, 931, 1070
BstNSI	RCATGY	1 cut(s)	1133
BstPI	GGTNACC	1 cut(s)	1204
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	1280
BstYI	RGATCY	1 cut(s)	1280
Bsu15I	ATCGAT	1 cut(s)	1257
BsuRI	GGCC	5 cut(s)	595, 704, 721, 803, 1002
BsuTUI	ATCGAT	1 cut(s)	1257
BtsCI	GGATG	4 cut(s)	14, 109, 1167, 1227
BtsIMutI	CAGTG	4 cut(s)	228, 582, 603, 658
Cac8I	GCNNGC	1 cut(s)	1131
Cfr13I	GGNCC	3 cut(s)	702, 728, 801
ClaI	ATCGAT	1 cut(s)	1257
CseI	GACGC	1 cut(s)	1139
Csp6I	GTAC	3 cut(s)	106, 697, 961
CspCI	CAANNNNNGTGG	2 cut(s)	1258, 1293
CviAII	CATG	2 cut(s)	940, 1130
CviQI	GTAC	3 cut(s)	106, 697, 961
DdeI	CTNAG	2 cut(s)	286, 919
DpnI	GATC	4 cut(s)	149, 624, 873, 1282
DpnII	GATC	4 cut(s)	147, 622, 871, 1280
DriI	GACNNNNNGTC	1 cut(s)	1035
EaeI	YGGCCR	1 cut(s)	1000
Eam1105I	GACNNNNNGTC	1 cut(s)	1035
Eco32I	GATATC	1 cut(s)	1101
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	732
Eco91I	GGTNACC	1 cut(s)	1204
EcoO65I	GGTNACC	1 cut(s)	1204
EcoRI	GAATTC	2 cut(s)	244, 1265
EcoRV	GATATC	1 cut(s)	1101
FaeI	CATG	2 cut(s)	943, 1133
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	2 cut(s)	939, 1129
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	719
FokI	GGATG	4 cut(s)	21, 96, 1154, 1234
Fsp4HI	GCNGC	1 cut(s)	719
FspBI	CTAG	4 cut(s)	116, 357, 534, 1211
GluI	GCNGC	1 cut(s)	719
HaeIII	GGCC	5 cut(s)	595, 704, 721, 803, 1002
HapII	CCGG	2 cut(s)	671, 700
HgaI	GACGC	1 cut(s)	1139
Hin1I	GRCGYC	1 cut(s)	1150
Hin1II	CATG	2 cut(s)	943, 1133
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HpaII	CCGG	2 cut(s)	671, 700
HphI	GGTGA	5 cut(s)	67, 75, 1204, 1216, 1228
Hpy166II	GTNNAC	6 cut(s)	228, 339, 367, 400, 580, 731
Hpy188I	TCNGA	8 cut(s)	136, 147, 521, 797, 824, 922, 1201, 1301
Hpy188III	TCNNGA	4 cut(s)	6, 30, 626, 875
Hpy8I	GTNNAC	6 cut(s)	228, 339, 367, 400, 580, 731
HpyAV	CCTTC	5 cut(s)	88, 186, 761, 982, 1076
HpyCH4III	ACNGT	6 cut(s)	232, 397, 508, 577, 653, 1012
HpyCH4IV	ACGT	2 cut(s)	191, 611
HpyCH4V	TGCA	4 cut(s)	416, 1049, 1133, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	718, 931, 1070
HpyF3I	CTNAG	2 cut(s)	286, 919
HpySE526I	ACGT	2 cut(s)	191, 611
Hsp92I	GRCGYC	1 cut(s)	1150
Hsp92II	CATG	2 cut(s)	943, 1133
Kzo9I	GATC	4 cut(s)	147, 622, 871, 1280
LweI	GCATC	3 cut(s)	47, 869, 1051
MaeI	CTAG	4 cut(s)	116, 357, 534, 1211
MaeII	ACGT	2 cut(s)	191, 611
MaeIII	GTNAC	6 cut(s)	73, 292, 653, 1151, 1162, 1204
MalI	GATC	4 cut(s)	149, 624, 873, 1282
MboI	GATC	4 cut(s)	147, 622, 871, 1280
MboII	GAAGA	5 cut(s)	49, 549, 649, 895, 1108
MflI	RGATCY	1 cut(s)	1280
MluCI	AATT	6 cut(s)	159, 244, 433, 553, 864, 1265
MmeI	TCCRAC	2 cut(s)	114, 1179
MseI	TTAA	4 cut(s)	432, 459, 474, 552
MslI	CAYNNNNRTG	1 cut(s)	1091
MspI	CCGG	2 cut(s)	671, 700
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	1111
MwoI	GCNNNNNNNGC	3 cut(s)	718, 931, 1070
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	4 cut(s)	147, 622, 871, 1280
NlaIII	CATG	2 cut(s)	943, 1133
NlaIV	GGNNCC	3 cut(s)	675, 691, 1282
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	4 cut(s)	73, 653, 1151, 1204
NspI	RCATGY	1 cut(s)	1133
NspV	TTCGAA	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	1091
PaeI	GCATGC	1 cut(s)	1133
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	1111
PkrI	GCNGC	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	611
PspEI	GGTNACC	1 cut(s)	1204
PspN4I	GGNNCC	3 cut(s)	675, 691, 1282
PspPI	GGNCC	3 cut(s)	702, 728, 801
PsuI	RGATCY	1 cut(s)	1280
RsaI	GTAC	3 cut(s)	107, 698, 962
RsaNI	GTAC	3 cut(s)	106, 697, 961
RseI	CAYNNNNRTG	1 cut(s)	1091
SaqAI	TTAA	4 cut(s)	432, 459, 474, 552
SatI	GCNGC	1 cut(s)	719
Sau3AI	GATC	4 cut(s)	147, 622, 871, 1280
Sau96I	GGNCC	3 cut(s)	702, 728, 801
ScrFI	CCNGG	1 cut(s)	701
SfaNI	GCATC	3 cut(s)	47, 869, 1051
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	835
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	1 cut(s)	1091
SmlI	CTYRAG	2 cut(s)	855, 1292
SmoI	CTYRAG	2 cut(s)	855, 1292
SphI	GCATGC	1 cut(s)	1133
Sse9I	AATT	6 cut(s)	159, 244, 433, 553, 864, 1265
SsiI	CCGC	2 cut(s)	498, 718
SspMI	CTAG	4 cut(s)	116, 357, 534, 1211
StyD4I	CCNGG	1 cut(s)	699
TaaI	ACNGT	6 cut(s)	232, 397, 508, 577, 653, 1012
TaiI	ACGT	2 cut(s)	194, 614
TaqI	TCGA	4 cut(s)	330, 835, 1103, 1257
TasI	AATT	6 cut(s)	159, 244, 433, 553, 864, 1265
TauI	GCSGC	1 cut(s)	721
Tru1I	TTAA	4 cut(s)	432, 459, 474, 552
Tru9I	TTAA	4 cut(s)	432, 459, 474, 552
TscAI	CASTG	4 cut(s)	235, 582, 603, 658
TseFI	GTSAC	4 cut(s)	73, 653, 1151, 1204
Tsp45I	GTSAC	4 cut(s)	73, 653, 1151, 1204
TspDTI	ATGAA	6 cut(s)	58, 436, 650, 806, 956, 1191
TspGWI	ACGGA	1 cut(s)	1202
TspRI	CASTG	4 cut(s)	235, 582, 603, 658
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	2 cut(s)	244, 1265
XceI	RCATGY	1 cut(s)	1133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	954
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	4 cut(s)	116, 357, 534, 1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.