Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

49101212 .. 49103099

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG204300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTCCATAGCTTCAAGAATGGCATCAACTTTCTCATTATTCTTCTCCATTTTCATCGTCACCTTCTCACCAACCTTGTGCCTGAACCAGTACCATCCCCTAGACCCTCTAACCCAGTCGGAGTTCAATCAGATCAAATCCATAATTCAAAGCTCATACCCCTCTCAAAACCTCACGTTCCAATATGTCGGGTTAGACGAACCAGAAAAGTCCACTGTCATCTTATGGAATTCCAAATCCACAGCCAAATCCTACCCTCCTCGCCGAGCCTCAGTTGTTACAAGACTAAACAAACAAACCCACGAGATTATAGTCGATTTATCAACCCATTCTATTCTCTCTAGTAAAGTTCACAAGGGAAATGGCTACCCTCTGCTAACCGCAGACGAACAAACACTTGCAAATGAGTTGCCTTTTAATTATCAACCATTCATTCAATCCATTAAAAGGAGAGGGCTTAATATATCCCAAGTTGTGTGTAGCGGTTTTACAGTTGGTTGGTTCGGAGAGGGAAAGACTAGAAGAATAATAAAGATTAATTCCTTTTACACAAATGGGACAGTGAACTTGTTTGTGAGGCCAGTGGAGGGAATAACGTTGGTTGTTGATCTTGATATAATGAAGATAGTTCAATACAGTGACAGGGCTGTCGTTCCGGTGCCAAAGGGAGAGGGAACCGAGTACCGGGCCTCAAAGCAGAAGCGGCCTTTTGGTCCACGACTAAATGGTGCTTCAGTTTTGTCTGGGGGAGAAGGGTTCGTCCTTGACGGGAACATTATCAGATGGGCCAACTGGGTTTTTCATCTCGGATTTGATGTTCGAACGGGAACGATTATATCTCAAGCATCAATTTACGATCTGGACAAGAAGAAATACAGGAGAGTTTTGTACAGAGGGTTTGTCTCAGAGCTGTTTGTGCCTTACATGAACCCAACTGCTGACTGGTACTACAAAACCTTCTTTGACAATGGAGAGTTTGGGTTCGGCCAATCTACTGTCTCACTTGAACCATTGACTGATTGTCCTAACAATGCCAAGTTCATAGATGCCTACTATGCTTCACAAGAAGGCACACCTGTGAAGATATCGAATGCTATATGTATCTTTGAACGGCATGCAGGAAACATCTTGTGGCGTCACACAGAAGTTACCATCCCAGATGAAGTGATAACGGAGGTGAGGTCGGAGGTGACCCTAGTGGTGAGGATGATTGCAGTTGTGGGCAACTATGACTACATAATCGATTGGGAATTCAAACCAAGTGGATCCATAAAACTTGAGGTTGGGCTCACTGGTGTGCTAGAAACTGAAGGGGTCAGATACACCCACACAGACCAAATAAACGAGGAAGTTTATGGTACACTAGTTACAGATAACACAATTGCTGTGAACCATGACCACTTCTTGACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

471

Amino Acids

53.21

Weight (kDa)

6.57

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	32 - 116	2.3e-19	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	124 - 220	1.9e-21	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	249 - 471	1e-73	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	658
AciI	CCGC	3 cut(s)	381, 483, 703
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	2 cut(s)	1260, 1273
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	2 cut(s)	229, 1250
AcuI	CTGAAG	2 cut(s)	717, 1329
AcyI	GRCGYC	1 cut(s)	1135
AfaI	GTAC	5 cut(s)	92, 683, 890, 947, 1360
AfiI	CCNNNNNNNGG	3 cut(s)	447, 587, 684
AgsI	TTSAA	8 cut(s)	15, 127, 149, 437, 632, 1007, 1109, 1255
AhdI	GACNNNNNGTC	1 cut(s)	1020
AhlI	ACTAGT	1 cut(s)	1363
AleI	CACNNNNGTG	2 cut(s)	1076, 1295
AloI	GAACNNNNNNTCC	2 cut(s)	801, 833
AluBI	AGCT	3 cut(s)	11, 153, 910
AluI	AGCT	3 cut(s)	11, 153, 910
Alw26I	GTCTC	2 cut(s)	907, 1003
AlwI	GGATC	2 cut(s)	1260, 1273
AoxI	GGCC	5 cut(s)	578, 687, 704, 786, 985
ApoI	RAATTY	2 cut(s)	229, 1250
AseI	ATTAAT	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	687, 713, 786
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	5 cut(s)	52, 60, 1189, 1201, 1213
AsuII	TTCGAA	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	713
BaeI	ACNNNNGTAYC	2 cut(s)	1350, 1383
BamHI	GGATCC	1 cut(s)	1265
BanI	GGYRCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	1290
BauI	CACGAG	1 cut(s)	302
BccI	CCATC	3 cut(s)	102, 777, 1160
BceAI	ACGGC	1 cut(s)	1127
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	907, 1003
BcuI	ACTAGT	1 cut(s)	1363
BfaI	CTAG	6 cut(s)	101, 342, 519, 1196, 1301, 1364
BisI	GCNGC	1 cut(s)	704
BlsI	GCNGC	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	1 cut(s)	713
BmeRI	GACNNNNNGTC	1 cut(s)	1020
BmgT120I	GGNCC	3 cut(s)	687, 713, 786
BmiI	GGNNCC	3 cut(s)	660, 676, 1267
BmrFI	CCNGG	1 cut(s)	686
BmrI	ACTGGG	2 cut(s)	109, 802
BmsI	GCATC	3 cut(s)	32, 854, 1036
BmuI	ACTGGG	2 cut(s)	109, 802
Bpu14I	TTCGAA	1 cut(s)	820
BpuEI	CTTGAG	2 cut(s)	825, 1298
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	1242
BsaHI	GRCGYC	1 cut(s)	1135
BsaWI	WCCGGW	1 cut(s)	655
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 587, 684
Bse1I	ACTGG	6 cut(s)	88, 115, 581, 797, 947, 1297
BseCI	ATCGAT	1 cut(s)	1242
BseGI	GGATG	3 cut(s)	94, 1152, 1212
BseLI	CCNNNNNNNGG	3 cut(s)	447, 587, 684
BseMII	CTCAG	2 cut(s)	285, 918
BseNI	ACTGG	6 cut(s)	88, 115, 581, 797, 947, 1297
BseRI	GAGGAG	1 cut(s)	249
BshFI	GGCC	5 cut(s)	580, 689, 706, 788, 987
BshNI	GGYRCC	1 cut(s)	658
BshVI	ATCGAT	1 cut(s)	1242
BsiSI	CCGG	2 cut(s)	656, 685
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	3 cut(s)	447, 587, 684
BsmAI	GTCTC	2 cut(s)	907, 1003
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	5 cut(s)	580, 689, 706, 788, 987
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	1290
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	4 cut(s)	132, 607, 856, 1265
BspACI	CCGC	3 cut(s)	381, 483, 703
BspANI	GGCC	5 cut(s)	580, 689, 706, 788, 987
BspCNI	CTCAG	2 cut(s)	284, 917
BspDI	ATCGAT	1 cut(s)	1242
BspLI	GGNNCC	3 cut(s)	660, 676, 1267
BspPI	GGATC	2 cut(s)	1260, 1273
BspT104I	TTCGAA	1 cut(s)	820
BspT107I	GGYRCC	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	6 cut(s)	88, 115, 581, 797, 947, 1297
BssMI	GATC	4 cut(s)	132, 607, 856, 1265
BssNI	GRCGYC	1 cut(s)	1135
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	5 cut(s)	217, 493, 562, 638, 997
BstACI	GRCGYC	1 cut(s)	1135
BstAUI	TGTACA	1 cut(s)	888
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	1 cut(s)	1116
BstDEI	CTNAG	2 cut(s)	271, 904
BstEII	GGTNACC	1 cut(s)	1189
BstF5I	GGATG	3 cut(s)	94, 1152, 1212
BstKTI	GATC	4 cut(s)	135, 610, 859, 1268
BstMAI	GTCTC	2 cut(s)	907, 1003
BstMBI	GATC	4 cut(s)	132, 607, 856, 1265
BstMWI	GCNNNNNNNGC	3 cut(s)	703, 916, 1055
BstNSI	RCATGY	1 cut(s)	1118
BstPI	GGTNACC	1 cut(s)	1189
BstSCI	CCNGG	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	1265
BstYI	RGATCY	1 cut(s)	1265
Bsu15I	ATCGAT	1 cut(s)	1242
BsuRI	GGCC	5 cut(s)	580, 689, 706, 788, 987
BsuTUI	ATCGAT	1 cut(s)	1242
BtsCI	GGATG	3 cut(s)	94, 1152, 1212
BtsIMutI	CAGTG	5 cut(s)	213, 567, 588, 643, 1290
Cac8I	GCNNGC	1 cut(s)	1116
Cfr13I	GGNCC	3 cut(s)	687, 713, 786
ClaI	ATCGAT	1 cut(s)	1242
CseI	GACGC	1 cut(s)	1124
Csp6I	GTAC	5 cut(s)	91, 682, 889, 946, 1359
CspCI	CAANNNNNGTGG	2 cut(s)	1243, 1278
CviAII	CATG	3 cut(s)	925, 1115, 1394
CviQI	GTAC	5 cut(s)	91, 682, 889, 946, 1359
DdeI	CTNAG	2 cut(s)	271, 904
DpnI	GATC	4 cut(s)	134, 609, 858, 1267
DpnII	GATC	4 cut(s)	132, 607, 856, 1265
DrdI	GACNNNNNNGTC	1 cut(s)	647
DriI	GACNNNNNGTC	1 cut(s)	1020
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	985
Eam1105I	GACNNNNNGTC	1 cut(s)	1020
Eco24I	GRGCYC	1 cut(s)	1290
Eco32I	GATATC	1 cut(s)	1086
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	2 cut(s)	717, 1329
Eco91I	GGTNACC	1 cut(s)	1189
EcoO65I	GGTNACC	1 cut(s)	1189
EcoRI	GAATTC	2 cut(s)	229, 1250
EcoRV	GATATC	1 cut(s)	1086
EcoT38I	GRGCYC	1 cut(s)	1290
FaeI	CATG	3 cut(s)	928, 1118, 1397
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	3 cut(s)	924, 1114, 1393
Fnu4HI	GCNGC	1 cut(s)	704
FokI	GGATG	3 cut(s)	81, 1139, 1219
FriOI	GRGCYC	1 cut(s)	1290
Fsp4HI	GCNGC	1 cut(s)	704
FspBI	CTAG	6 cut(s)	101, 342, 519, 1196, 1301, 1364
GluI	GCNGC	1 cut(s)	704
HaeIII	GGCC	5 cut(s)	580, 689, 706, 788, 987
HapII	CCGG	2 cut(s)	656, 685
HgaI	GACGC	1 cut(s)	1124
Hin1I	GRCGYC	1 cut(s)	1135
Hin1II	CATG	3 cut(s)	928, 1118, 1397
HpaII	CCGG	2 cut(s)	656, 685
HphI	GGTGA	5 cut(s)	52, 60, 1189, 1201, 1213
Hpy166II	GTNNAC	6 cut(s)	213, 352, 565, 716, 1361, 1390
Hpy188I	TCNGA	8 cut(s)	121, 132, 506, 782, 809, 907, 1186, 1319
Hpy188III	TCNNGA	4 cut(s)	15, 611, 860, 1405
Hpy8I	GTNNAC	6 cut(s)	213, 352, 565, 716, 1361, 1390
HpyAV	CCTTC	5 cut(s)	73, 746, 967, 1061, 1304
HpyCH4III	ACNGT	5 cut(s)	217, 493, 562, 638, 997
HpyCH4IV	ACGT	2 cut(s)	176, 596
HpyCH4V	TGCA	3 cut(s)	401, 1118, 1214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	703, 916, 1055
HpyF3I	CTNAG	2 cut(s)	271, 904
HpySE526I	ACGT	2 cut(s)	176, 596
Hsp92I	GRCGYC	1 cut(s)	1135
Hsp92II	CATG	3 cut(s)	928, 1118, 1397
Kzo9I	GATC	4 cut(s)	132, 607, 856, 1265
LweI	GCATC	3 cut(s)	32, 854, 1036
MaeI	CTAG	6 cut(s)	101, 342, 519, 1196, 1301, 1364
MaeII	ACGT	2 cut(s)	176, 596
MaeIII	GTNAC	7 cut(s)	58, 277, 638, 1136, 1147, 1189, 1366
MalI	GATC	4 cut(s)	134, 609, 858, 1267
MboI	GATC	4 cut(s)	132, 607, 856, 1265
MboII	GAAGA	5 cut(s)	34, 534, 634, 880, 1093
MfeI	CAATTG	1 cut(s)	1380
MflI	RGATCY	1 cut(s)	1265
MhlI	GDGCHC	1 cut(s)	1290
MluCI	AATT	7 cut(s)	144, 229, 418, 538, 849, 1250, 1380
MmeI	TCCRAC	2 cut(s)	99, 1164
MseI	TTAA	4 cut(s)	417, 444, 459, 537
MslI	CAYNNNNRTG	2 cut(s)	1076, 1295
MspI	CCGG	2 cut(s)	656, 685
MspR9I	CCNGG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	1380
Mva1269I	GAATGC	1 cut(s)	1096
MwoI	GCNNNNNNNGC	3 cut(s)	703, 916, 1055
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	4 cut(s)	132, 607, 856, 1265
NlaIII	CATG	3 cut(s)	928, 1118, 1397
NlaIV	GGNNCC	3 cut(s)	660, 676, 1267
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	4 cut(s)	58, 638, 1136, 1189
NspI	RCATGY	1 cut(s)	1118
NspV	TTCGAA	1 cut(s)	820
OliI	CACNNNNGTG	2 cut(s)	1076, 1295
PaeI	GCATGC	1 cut(s)	1118
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	1096
PkrI	GCNGC	1 cut(s)	705
PshBI	ATTAAT	1 cut(s)	537
Psp1406I	AACGTT	1 cut(s)	596
PspEI	GGTNACC	1 cut(s)	1189
PspN4I	GGNNCC	3 cut(s)	660, 676, 1267
PspPI	GGNCC	3 cut(s)	687, 713, 786
PsuI	RGATCY	1 cut(s)	1265
RsaI	GTAC	5 cut(s)	92, 683, 890, 947, 1360
RsaNI	GTAC	5 cut(s)	91, 682, 889, 946, 1359
RseI	CAYNNNNRTG	2 cut(s)	1076, 1295
SaqAI	TTAA	4 cut(s)	417, 444, 459, 537
SatI	GCNGC	1 cut(s)	704
Sau3AI	GATC	4 cut(s)	132, 607, 856, 1265
Sau96I	GGNCC	3 cut(s)	687, 713, 786
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	1290
SfaNI	GCATC	3 cut(s)	32, 854, 1036
SfuI	TTCGAA	1 cut(s)	820
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	2 cut(s)	1076, 1295
SmlI	CTYRAG	2 cut(s)	840, 1277
SmoI	CTYRAG	2 cut(s)	840, 1277
SpeI	ACTAGT	1 cut(s)	1363
SphI	GCATGC	1 cut(s)	1118
Sse9I	AATT	7 cut(s)	144, 229, 418, 538, 849, 1250, 1380
SsiI	CCGC	3 cut(s)	381, 483, 703
SspMI	CTAG	6 cut(s)	101, 342, 519, 1196, 1301, 1364
StyD4I	CCNGG	1 cut(s)	684
TaaI	ACNGT	5 cut(s)	217, 493, 562, 638, 997
TaiI	ACGT	2 cut(s)	179, 599
TaqI	TCGA	4 cut(s)	315, 820, 1088, 1242
TasI	AATT	7 cut(s)	144, 229, 418, 538, 849, 1250, 1380
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	1 cut(s)	706
Tru1I	TTAA	4 cut(s)	417, 444, 459, 537
Tru9I	TTAA	4 cut(s)	417, 444, 459, 537
TscAI	CASTG	5 cut(s)	220, 567, 588, 643, 1297
TseFI	GTSAC	4 cut(s)	58, 638, 1136, 1189
Tsp45I	GTSAC	4 cut(s)	58, 638, 1136, 1189
TspDTI	ATGAA	7 cut(s)	43, 421, 635, 791, 941, 1030, 1176
TspGWI	ACGGA	1 cut(s)	1187
TspRI	CASTG	5 cut(s)	220, 567, 588, 643, 1297
VpaK11BI	GGWCC	1 cut(s)	713
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	2 cut(s)	229, 1250
XceI	RCATGY	1 cut(s)	1118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	939
XspI	CTAG	6 cut(s)	101, 342, 519, 1196, 1301, 1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.