Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

40805683 .. 40807076

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCCTACAAACCACTTATCGAATCGGTTAATAAGAGGGGGCTTAACATGTCTGAGGTTGTTTGTCGCACGTTTTCAGTTGGGTGGTATGGGGAGGAGCAAAGCAAAAGAGTGATCAAGATAGTGTTTTATGTTGAGGGAACAGTTAGTTTGTACATGTGGCCTATTGAGGGAATATTGTTGGTGGTTGATCTTGATCAAATGAAAATAGTCGAATACCATGACAGAGTTAGGGTTCCGCTGCCAAAATCTGAGGGAACAGAGTACCGGCTTTCAAAGCAGAACCCACCGTTCCGTCCACGACTAAACGATATTTTAAAGCCTCTCTGTGTTCTCTCTCTCAGCAGCCACATCGCCAACGTCGGCCTCCGGAACCTCGACCTCCTCCTCGGCCTCGAAAATCGCGTCAAATATACCGTCGTCGAGGTCCTCAAGGGCGACTACCTCCTCTCGAGATCAGGATCTGCTGCCTTGATCCGATGTTGGAATCGCTGCCACAAAGGCGTCGTTTGGTGCTGCGACATCTCTAGAGCAATCGGTGAAGCTATGGCTCAATTGAAACTCATCACTGCATATTTGTCTCCTGCCACTCAGGAATGGACTGGACAAAAAGGTCAAGTCAAGCGAGATGGAAAGGAAGAACACAGAGCTAAGGAGATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

221

Amino Acids

25.25

Weight (kDa)

9.28

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	4 - 80	2.7e-16	Copper amine oxidase, N3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	612
AccII	CGCG	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	3 cut(s)	469, 469, 652
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	2 cut(s)	155, 266
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	2 cut(s)	48, 156
AgsI	TTSAA	2 cut(s)	276, 559
AluBI	AGCT	2 cut(s)	545, 650
AluI	AGCT	2 cut(s)	545, 650
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	3 cut(s)	469, 469, 652
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	451
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	3 cut(s)	161, 364, 391
ApeKI	GCWGC	5 cut(s)	241, 345, 467, 492, 516
ArsI	GACNNNNNNTTYG	4 cut(s)	390, 402, 422, 434
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	427
BbvI	GCAGC	5 cut(s)	228, 357, 454, 479, 503
BccI	CCATC	1 cut(s)	623
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BclI	TGATCA	2 cut(s)	114, 196
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	501
BisI	GCNGC	5 cut(s)	242, 346, 468, 493, 517
BlsI	GCNGC	5 cut(s)	243, 347, 469, 494, 518
Bme18I	GGWCC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	237, 374
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	416
BsaBI	GATNNNNATC	2 cut(s)	195, 460
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	607
Bse8I	GATNNNNATC	2 cut(s)	195, 460
BseAI	TCCGGA	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	388
BseJI	GATNNNNATC	2 cut(s)	195, 460
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	4 cut(s)	45, 243, 355, 605
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	4 cut(s)	110, 374, 377, 437
BseXI	GCAGC	5 cut(s)	228, 357, 454, 479, 503
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	163, 366, 393
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	268, 370
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	163, 366, 393
BsoBI	CYCGRG	1 cut(s)	451
Bsp13I	TCCGGA	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	3 cut(s)	163, 366, 393
BspCNI	CTCAG	4 cut(s)	46, 244, 354, 604
BspEI	TCCGGA	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	237, 374
BspPI	GGATC	3 cut(s)	469, 469, 652
BsrFI	RCCGGY	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
BssNI	GRCGYC	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	145, 291, 418
BstACI	GRCGYC	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	153
BstDEI	CTNAG	5 cut(s)	54, 252, 341, 591, 651
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	7 cut(s)	117, 193, 199, 458, 464, 477, 660
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 501
BstNSI	RCATGY	2 cut(s)	52, 160
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	5 cut(s)	228, 357, 454, 479, 503
BstX2I	RGATCY	2 cut(s)	461, 657
BstYI	RGATCY	2 cut(s)	461, 657
BsuRI	GGCC	3 cut(s)	163, 366, 393
BtgZI	GCGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	2 cut(s)	394, 493
Csp6I	GTAC	2 cut(s)	154, 265
CviAII	CATG	3 cut(s)	49, 157, 221
CviQI	GTAC	2 cut(s)	154, 265
DdeI	CTNAG	5 cut(s)	54, 252, 341, 591, 651
DpnI	GATC	7 cut(s)	116, 192, 198, 457, 463, 476, 659
DpnII	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
DraI	TTTAAA	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	612
DseDI	GACNNNNNNGTC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	427
FaeI	CATG	3 cut(s)	52, 160, 224
FaiI	YATR	8 cut(s)	50, 90, 132, 158, 222, 414, 548, 574
FatI	CATG	3 cut(s)	48, 156, 220
FbaI	TGATCA	2 cut(s)	114, 196
Fnu4HI	GCNGC	5 cut(s)	242, 346, 468, 493, 517
Fsp4HI	GCNGC	5 cut(s)	242, 346, 468, 493, 517
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	5 cut(s)	242, 346, 468, 493, 517
HaeIII	GGCC	3 cut(s)	163, 366, 393
HapII	CCGG	2 cut(s)	268, 370
HgaI	GACGC	2 cut(s)	394, 493
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	3 cut(s)	52, 160, 224
HinfI	GANTC	2 cut(s)	23, 487
HpaII	CCGG	2 cut(s)	268, 370
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	55, 253, 479
Hpy188III	TCNNGA	8 cut(s)	118, 194, 370, 451, 453, 459, 528, 593
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	4 cut(s)	365, 422, 425, 509
HpyCH4III	ACNGT	3 cut(s)	145, 291, 418
HpyCH4IV	ACGT	2 cut(s)	71, 360
HpyCH4V	TGCA	1 cut(s)	572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 501
HpyF3I	CTNAG	5 cut(s)	54, 252, 341, 591, 651
HpySE526I	ACGT	2 cut(s)	71, 360
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	52, 160, 224
Kpn2I	TCCGGA	1 cut(s)	369
Ksp22I	TGATCA	2 cut(s)	114, 196
Kzo9I	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	281, 383, 444, 578, 588, 597
Lsp1109I	GCAGC	5 cut(s)	228, 357, 454, 479, 503
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	71, 360
MalI	GATC	7 cut(s)	116, 192, 198, 457, 463, 476, 659
MboI	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
MboII	GAAGA	1 cut(s)	650
MfeI	CAATTG	1 cut(s)	554
MflI	RGATCY	2 cut(s)	461, 657
MluCI	AATT	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	369
MseI	TTAA	3 cut(s)	30, 45, 317
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	268, 370
MunI	CAATTG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	277, 501
NdeII	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
NlaIII	CATG	3 cut(s)	52, 160, 224
NlaIV	GGNNCC	2 cut(s)	237, 374
NmeAIII	GCCGAG	1 cut(s)	369
NspI	RCATGY	2 cut(s)	52, 160
PaeR7I	CTCGAG	1 cut(s)	451
PciI	ACATGT	2 cut(s)	48, 156
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	23, 487
PkrI	GCNGC	5 cut(s)	243, 347, 469, 494, 518
PpuMI	RGGWCCY	1 cut(s)	427
PscI	ACATGT	2 cut(s)	48, 156
Psp5II	RGGWCCY	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	237, 374
PspPI	GGNCC	1 cut(s)	427
PspPPI	RGGWCCY	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	461, 657
RsaI	GTAC	2 cut(s)	155, 266
RsaNI	GTAC	2 cut(s)	154, 265
SaqAI	TTAA	3 cut(s)	30, 45, 317
SatI	GCNGC	5 cut(s)	242, 346, 468, 493, 517
Sau3AI	GATC	7 cut(s)	114, 190, 196, 455, 461, 474, 657
Sau96I	GGNCC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	427
SlaI	CTCGAG	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	431, 451
SmoI	CTYRAG	2 cut(s)	431, 451
Sse9I	AATT	1 cut(s)	554
SsiI	CCGC	1 cut(s)	239
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	145, 291, 418
TaiI	ACGT	2 cut(s)	74, 363
TaqI	TCGA	6 cut(s)	21, 213, 378, 396, 423, 452
TasI	AATT	1 cut(s)	554
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	23, 487
Tru1I	TTAA	3 cut(s)	30, 45, 317
Tru9I	TTAA	3 cut(s)	30, 45, 317
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	5 cut(s)	241, 345, 467, 492, 516
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	2 cut(s)	284, 650
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	427
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	2 cut(s)	52, 160
XhoI	CTCGAG	1 cut(s)	451
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.