Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

40662629 .. 40665433

Gene Structure 2805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGTCCATAGCTTCAAGAATGACATCAACTTTCTCATTATTCTTCTCCATTTTCATCGTCACCTTCTCACCAACCTTGTGCCTGAACCGGTACCATCCCCTAGACCCTCTAACCCCGTCGGAGTTCATTCAGATCAAATCCATACTTCAAAGCTCATACCCCTCTCAAAACCTCACGTTCCAATATGTCGGGTTAGACGAGCCAGAGAAGTCCACCGTACTCCTCTTATGGAATTCCAAATCCACAGCCAAATCCTACCCTCCTCGCCGAGCCTCAGTCGTTACAAGACTAAACAAACAGACCCACGAGATTATAGTCGATTTATCAACCCATTCCATTCTCTCTAGTAAAGTTCACATGGGAAATGGCTACCCTCTGCTAACCGTAGACGAACAAACACTTGCAAATGAGTTGCCTTTTAATTATCAACCATTCATTCAATCCATTAAAAGGAGAGGGCTTAATATATCCCAAGTTGTGTGTAGCGGTTTTACAGTTGGTTGGTTCGGAGAGGGAAAGACTAGAAGAATAATAAAGATTAATTCTTTTTACACAAATGGGACAGTGAACTTGTTTGTGAGGCCAGTGGAGGGAATAACGTTGGTTGTTGATCTTGATATAATGAAGATAGTTCAATACAGTGACAGGGGTATAGTTCCGGTGCCAAGGGGAGAGAGAACCGAGTACCGGGCCTCAAAGCAGAAGCCGCCTTTTGGTCCACGAGTAAATGGTGCTTCAGTGTTGTCTGAGGGAGATGGGTTCGTCCTCGACGGGAACATTATCAGATGGGCCAACTGGATTTTTCATCTCGGATTTGATGTTCGAACTGGAACGATTATATCTCAAGCATCAATTTACGATCTGGACAAGAAGAAATACAGGAGAGTTTTGTACAGAGGGTTTGTCTCAGAGCTGTTTGTGCCTTACATGAACCCAACTGCTGACTGGTACTACAAAACCTTCTTTGACAATGGAGAGTTTGGGTTCGGCCAAAGTACTGTCTCACTTGAACCATTGACTGATTGTCCTAACAATGCAAAGTTCATAGATGCCTACTATGCTTCACAAGAAGGCACACCTGTGAAGATATCGAATGCTATATGCATCTTTGAACGGCATGCAGGAAACATCTTGTGGCGTCACACAGAAGTTACCATCCCAGATGAAGTGATAACGGAGGTGAGGTCGGAGGTGACCCTAGTGGTGAGGATGATTGCAGTTGTGGGCAACTATGACTACATAATCGATTGGGAATTCAAACCAAGTGGATCCATAAAACTTGAGGTTGGGCTCACTGGTGTGCTAGAAACTGAAGGGGTCACATACACCGACAAAGACCAAATAAACGAAGAAGTTTATGGTACACTAGTTACAGATAACACAATTGCTGTGAACCATGACCACTTCTTGACATACTATCTTGACCTTGATGTGGACGGTGAAGCCAACTCTTTTGTTAAGAACAATTTGGTGACTAAACGTGTGACAGACCGGAGTATCCCAAGAAAGAGTTATTGGACAGTGGTAAGCGAGACTGCTAAGACGGAATCAGATGCAAAAATTCATTTGGGTTTGAAGCCGTCGGAACTAGTCGTGGTGAACCCTAATAAAAGGACCAAACCTGGGAATTCTGTCGGTTATCGCTTGATTCCAGGATCAGTTGCAGCACCCCTTCTGTTAGAGGATGATTACCCTCAAATTCGGGGTGCTTTTACTATGTACAATGTGTGGGTTACACCGTATAACAAATCTGAAAAATGGGCAGGAGGGAAATATGTTGACCAAAGCCGAGGAGGTGATACCTTAGCAGTTTGGAGTCTCAGGGATAGGGAAATTGAGAACAAAGACATAGTGCTGTGGTACACAATTGGCTTTCACCATGCTCCTTGCCAGGAAGACTTTCCAATGATGCCAACATTAAGTGGTGGATTTGAGCTCCGGCCAACCAATTTCTTTGAGCGCAGTCCGGTGCTTAAAGTTAGAATAACACCACCTCCTAAGCATGCGGACTCCCCTAATTGCACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

676

Amino Acids

76.47

Weight (kDa)

6.91

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	32 - 117	1.2e-16	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	125 - 221	4.7e-21	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	249 - 658	8.7e-137	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	90, 661
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	3 cut(s)	486, 707, 2006
AclI	AACGTT	1 cut(s)	599
AclWI	GGATC	3 cut(s)	1263, 1276, 1663
AcoI	YGGCCR	2 cut(s)	988, 1940
AcsI	RAATTY	5 cut(s)	232, 1253, 1560, 1627, 1698
AcuI	CTGAAG	2 cut(s)	720, 1332
AcyI	GRCGYC	1 cut(s)	1138
AfaI	GTAC	9 cut(s)	92, 219, 686, 893, 950, 997, 1363, 1721, 1862
AfiI	CCNNNNNNNGG	6 cut(s)	450, 590, 687, 713, 1432, 1623
AflIII	ACRYGT	1 cut(s)	1480
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	8 cut(s)	15, 149, 440, 635, 1010, 1112, 1258, 1576
AhdI	GACNNNNNGTC	1 cut(s)	1023
AhlI	ACTAGT	2 cut(s)	1366, 1588
AjnI	CCWGG	3 cut(s)	1621, 1651, 1890
AjuI	GAANNNNNNNTTGG	2 cut(s)	1498, 1530
AleI	CACNNNNGTG	2 cut(s)	1079, 1298
AloI	GAACNNNNNNTCC	2 cut(s)	804, 836
AluBI	AGCT	4 cut(s)	11, 153, 913, 1936
AluI	AGCT	4 cut(s)	11, 153, 913, 1936
Alw21I	GWGCWC	1 cut(s)	1938
Alw26I	GTCTC	4 cut(s)	910, 1006, 1526, 1823
AlwI	GGATC	3 cut(s)	1263, 1276, 1663
AoxI	GGCC	5 cut(s)	581, 690, 789, 988, 1940
ApeKI	GCWGC	1 cut(s)	1664
ApoI	RAATTY	5 cut(s)	232, 1253, 1560, 1627, 1698
AseI	ATTAAT	1 cut(s)	540
AsiGI	ACCGGT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	1899
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	1962
AspS9I	GGNCC	4 cut(s)	690, 716, 789, 1614
AsuC2I	CCSGG	1 cut(s)	689
AsuII	TTCGAA	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	716, 1614
BaeI	ACNNNNGTAYC	4 cut(s)	1353, 1386, 1480, 1513
BamHI	GGATCC	1 cut(s)	1268
BanI	GGYRCC	2 cut(s)	90, 661
BanII	GRGCYC	2 cut(s)	1293, 1938
BauI	CACGAG	2 cut(s)	305, 720
BbsI	GAAGAC	1 cut(s)	1902
Bbv12I	GWGCWC	1 cut(s)	1938
BbvI	GCAGC	1 cut(s)	1676
BccI	CCATC	4 cut(s)	102, 749, 780, 1163
BceAI	ACGGC	2 cut(s)	1130, 1564
BciT130I	CCWGG	3 cut(s)	1623, 1653, 1892
BciVI	GTATCC	1 cut(s)	1508
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	4 cut(s)	910, 1006, 1526, 1823
BcuI	ACTAGT	2 cut(s)	1366, 1588
BfaI	CTAG	7 cut(s)	101, 345, 522, 1199, 1304, 1367, 1589
BfuI	GTATCC	1 cut(s)	1508
BisI	GCNGC	2 cut(s)	707, 1665
BlsI	GCNGC	2 cut(s)	708, 1666
BmcAI	AGTACT	1 cut(s)	997
Bme1390I	CCNGG	4 cut(s)	689, 1623, 1653, 1892
Bme18I	GGWCC	2 cut(s)	716, 1614
BmeRI	GACNNNNNGTC	1 cut(s)	1023
BmgT120I	GGNCC	4 cut(s)	690, 716, 789, 1614
BmiI	GGNNCC	3 cut(s)	92, 663, 1270
BmrFI	CCNGG	4 cut(s)	689, 1623, 1653, 1892
BmsI	GCATC	5 cut(s)	857, 1039, 1113, 1543, 1899
BpiI	GAAGAC	1 cut(s)	1902
Bpu10I	CCTNAGC	2 cut(s)	1804, 1998
Bpu14I	TTCGAA	1 cut(s)	823
BpuEI	CTTGAG	2 cut(s)	828, 1301
BpuMI	CCSGG	1 cut(s)	689
Bsa29I	ATCGAT	1 cut(s)	1245
BsaHI	GRCGYC	1 cut(s)	1138
BsaJI	CCNNGG	3 cut(s)	665, 1622, 1789
BsaWI	WCCGGW	4 cut(s)	87, 658, 1491, 1966
BsaXI	ACNNNNNCTCC	4 cut(s)	1169, 1199, 1978, 2008
Bsc4I	CCNNNNNNNGG	6 cut(s)	450, 590, 687, 713, 1432, 1623
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	5 cut(s)	584, 800, 832, 950, 1300
BseBI	CCWGG	3 cut(s)	1623, 1653, 1892
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	3 cut(s)	665, 1622, 1789
BseGI	GGATG	4 cut(s)	94, 1155, 1215, 1690
BseLI	CCNNNNNNNGG	6 cut(s)	450, 590, 687, 713, 1432, 1623
BseMII	CTCAG	4 cut(s)	288, 738, 921, 1834
BseNI	ACTGG	5 cut(s)	584, 800, 832, 950, 1300
BseRI	GAGGAG	3 cut(s)	212, 252, 1806
BseXI	GCAGC	1 cut(s)	1676
BshFI	GGCC	5 cut(s)	583, 692, 791, 990, 1942
BshNI	GGYRCC	2 cut(s)	90, 661
BshTI	ACCGGT	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	1245
BsiHKAI	GWGCWC	1 cut(s)	1938
BsiSI	CCGG	6 cut(s)	88, 659, 688, 1492, 1939, 1967
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	6 cut(s)	450, 590, 687, 713, 1432, 1623
BsmAI	GTCTC	4 cut(s)	910, 1006, 1526, 1823
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	1099
BsnI	GGCC	5 cut(s)	583, 692, 791, 990, 1942
Bsp119I	TTCGAA	1 cut(s)	823
Bsp1286I	GDGCHC	2 cut(s)	1293, 1938
Bsp1407I	TGTACA	2 cut(s)	891, 1719
Bsp143I	GATC	5 cut(s)	132, 610, 859, 1268, 1655
BspACI	CCGC	3 cut(s)	486, 707, 2006
BspANI	GGCC	5 cut(s)	583, 692, 791, 990, 1942
BspCNI	CTCAG	4 cut(s)	287, 739, 920, 1833
BspDI	ATCGAT	1 cut(s)	1245
BspLI	GGNNCC	3 cut(s)	92, 663, 1270
BspPI	GGATC	3 cut(s)	1263, 1276, 1663
BspT104I	TTCGAA	1 cut(s)	823
BspT107I	GGYRCC	2 cut(s)	90, 661
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	2 cut(s)	891, 1719
BsrI	ACTGG	5 cut(s)	584, 800, 832, 950, 1300
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	665, 1622, 1789
BssMI	GATC	5 cut(s)	132, 610, 859, 1268, 1655
BssNI	GRCGYC	1 cut(s)	1138
BssSI	CACGAG	2 cut(s)	305, 720
BssT1I	CCWWGG	1 cut(s)	665
Bst2BI	CACGAG	2 cut(s)	305, 720
Bst2UI	CCWGG	3 cut(s)	1623, 1653, 1892
Bst4CI	ACNGT	9 cut(s)	217, 385, 496, 565, 641, 1000, 1439, 1522, 1740
BstACI	GRCGYC	1 cut(s)	1138
BstAUI	TGTACA	2 cut(s)	891, 1719
BstBI	TTCGAA	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	1119, 2004
BstDEI	CTNAG	7 cut(s)	274, 747, 907, 1539, 1804, 1820, 1998
BstEII	GGTNACC	1 cut(s)	1192
BstF5I	GGATG	4 cut(s)	94, 1155, 1215, 1690
BstHHI	GCGC	1 cut(s)	1962
BstKTI	GATC	5 cut(s)	135, 613, 862, 1271, 1658
BstMAI	GTCTC	4 cut(s)	910, 1006, 1526, 1823
BstMBI	GATC	5 cut(s)	132, 610, 859, 1268, 1655
BstMWI	GCNNNNNNNGC	3 cut(s)	706, 919, 1058
BstNI	CCWGG	3 cut(s)	1623, 1653, 1892
BstNSI	RCATGY	2 cut(s)	1121, 2006
BstPI	GGTNACC	1 cut(s)	1192
BstSCI	CCNGG	4 cut(s)	687, 1621, 1651, 1890
BstV1I	GCAGC	1 cut(s)	1676
BstV2I	GAAGAC	1 cut(s)	1902
BstX2I	RGATCY	1 cut(s)	1268
BstYI	RGATCY	1 cut(s)	1268
Bsu15I	ATCGAT	1 cut(s)	1245
BsuI	GTATCC	1 cut(s)	1508
BsuRI	GGCC	5 cut(s)	583, 692, 791, 990, 1942
BsuTUI	ATCGAT	1 cut(s)	1245
BtsCI	GGATG	4 cut(s)	94, 1155, 1215, 1690
BtsIMutI	CAGTG	6 cut(s)	570, 591, 646, 744, 1293, 1527
Cac8I	GCNNGC	2 cut(s)	1119, 2004
CfoI	GCGC	1 cut(s)	1962
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	690, 716, 789, 1614
ClaI	ATCGAT	1 cut(s)	1245
CseI	GACGC	1 cut(s)	1127
Csp6I	GTAC	9 cut(s)	91, 218, 685, 892, 949, 996, 1362, 1720, 1861
CspAI	ACCGGT	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	1246, 1281
CviAII	CATG	6 cut(s)	358, 928, 1118, 1397, 1880, 2003
CviQI	GTAC	9 cut(s)	91, 218, 685, 892, 949, 996, 1362, 1720, 1861
DdeI	CTNAG	7 cut(s)	274, 747, 907, 1539, 1804, 1820, 1998
DpnI	GATC	5 cut(s)	134, 612, 861, 1270, 1657
DpnII	GATC	5 cut(s)	132, 610, 859, 1268, 1655
DriI	GACNNNNNGTC	1 cut(s)	1023
EaeI	YGGCCR	2 cut(s)	988, 1940
Eam1105I	GACNNNNNGTC	1 cut(s)	1023
Ecl136II	GAGCTC	1 cut(s)	1936
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	2 cut(s)	1293, 1938
Eco32I	GATATC	1 cut(s)	1089
Eco47I	GGWCC	2 cut(s)	716, 1614
Eco53kI	GAGCTC	1 cut(s)	1936
Eco57I	CTGAAG	2 cut(s)	720, 1332
Eco91I	GGTNACC	1 cut(s)	1192
EcoICRI	GAGCTC	1 cut(s)	1936
EcoO65I	GGTNACC	1 cut(s)	1192
EcoRI	GAATTC	3 cut(s)	232, 1253, 1627
EcoRII	CCWGG	3 cut(s)	1621, 1651, 1890
EcoRV	GATATC	1 cut(s)	1089
EcoT14I	CCWWGG	1 cut(s)	665
EcoT22I	ATGCAT	1 cut(s)	1106
EcoT38I	GRGCYC	2 cut(s)	1293, 1938
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	6 cut(s)	361, 931, 1121, 1400, 1883, 2006
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	6 cut(s)	357, 927, 1117, 1396, 1879, 2002
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	707, 1665
FokI	GGATG	4 cut(s)	81, 1142, 1222, 1697
FriOI	GRGCYC	2 cut(s)	1293, 1938
Fsp4HI	GCNGC	2 cut(s)	707, 1665
FspBI	CTAG	7 cut(s)	101, 345, 522, 1199, 1304, 1367, 1589
GlaI	GCGC	1 cut(s)	1961
GluI	GCNGC	2 cut(s)	707, 1665
HaeIII	GGCC	5 cut(s)	583, 692, 791, 990, 1942
HapII	CCGG	6 cut(s)	88, 659, 688, 1492, 1939, 1967
HgaI	GACGC	1 cut(s)	1127
HhaI	GCGC	1 cut(s)	1962
Hin1I	GRCGYC	1 cut(s)	1138
Hin1II	CATG	6 cut(s)	361, 931, 1121, 1400, 1883, 2006
Hin6I	GCGC	1 cut(s)	1960
HinP1I	GCGC	1 cut(s)	1960
HincII	GTYRAC	1 cut(s)	1780
HindII	GTYRAC	1 cut(s)	1780
HinfI	GANTC	4 cut(s)	1547, 1648, 1816, 2009
HpaII	CCGG	6 cut(s)	88, 659, 688, 1492, 1939, 1967
Hpy188III	TCNNGA	5 cut(s)	15, 614, 863, 1408, 1421
Hpy99I	CGWCG	3 cut(s)	121, 773, 1585
HpyAV	CCTTC	5 cut(s)	73, 970, 1064, 1307, 1682
HpyCH4III	ACNGT	9 cut(s)	217, 385, 496, 565, 641, 1000, 1439, 1522, 1740
HpyCH4IV	ACGT	3 cut(s)	176, 599, 1480
HpyCH4V	TGCA	8 cut(s)	404, 1037, 1104, 1121, 1217, 1556, 1664, 2022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	706, 919, 1058
HpyF3I	CTNAG	7 cut(s)	274, 747, 907, 1539, 1804, 1820, 1998
HpySE526I	ACGT	3 cut(s)	176, 599, 1480
Hsp92I	GRCGYC	1 cut(s)	1138
Hsp92II	CATG	6 cut(s)	361, 931, 1121, 1400, 1883, 2006
HspAI	GCGC	1 cut(s)	1960
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	132, 610, 859, 1268, 1655
LmnI	GCTCC	2 cut(s)	1888, 1941
Lsp1109I	GCAGC	1 cut(s)	1676
LweI	GCATC	5 cut(s)	857, 1039, 1113, 1543, 1899
MaeI	CTAG	7 cut(s)	101, 345, 522, 1199, 1304, 1367, 1589
MaeII	ACGT	3 cut(s)	176, 599, 1480
MalI	GATC	5 cut(s)	134, 612, 861, 1270, 1657
MboI	GATC	5 cut(s)	132, 610, 859, 1268, 1655
MboII	GAAGA	7 cut(s)	34, 537, 637, 883, 1096, 1361, 1907
MfeI	CAATTG	2 cut(s)	1383, 1866
MflI	RGATCY	1 cut(s)	1268
MhlI	GDGCHC	2 cut(s)	1293, 1938
MlyI	GAGTC	2 cut(s)	1825, 2003
MmeI	TCCRAC	3 cut(s)	99, 1167, 1563
Mph1103I	ATGCAT	1 cut(s)	1106
MroXI	GAANNNNTTC	1 cut(s)	1899
MseI	TTAA	7 cut(s)	420, 447, 462, 540, 1458, 1919, 1974
MslI	CAYNNNNRTG	2 cut(s)	1079, 1298
MspI	CCGG	6 cut(s)	88, 659, 688, 1492, 1939, 1967
MspR9I	CCNGG	4 cut(s)	689, 1623, 1653, 1892
MunI	CAATTG	2 cut(s)	1383, 1866
Mva1269I	GAATGC	1 cut(s)	1099
MvaI	CCWGG	3 cut(s)	1623, 1653, 1892
MwoI	GCNNNNNNNGC	3 cut(s)	706, 919, 1058
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	5 cut(s)	132, 610, 859, 1268, 1655
NlaIII	CATG	6 cut(s)	361, 931, 1121, 1400, 1883, 2006
NlaIV	GGNNCC	3 cut(s)	92, 663, 1270
NmeAIII	GCCGAG	2 cut(s)	293, 1814
NmuCI	GTSAC	7 cut(s)	58, 641, 1139, 1192, 1318, 1471, 1483
NsiI	ATGCAT	1 cut(s)	1106
NspI	RCATGY	2 cut(s)	1121, 2006
NspV	TTCGAA	1 cut(s)	823
OliI	CACNNNNGTG	2 cut(s)	1079, 1298
PaeI	GCATGC	2 cut(s)	1121, 2006
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	1099
PdmI	GAANNNNTTC	1 cut(s)	1899
PfeI	GAWTC	2 cut(s)	1547, 1648
PfoI	TCCNGGA	1 cut(s)	1651
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	708, 1666
PleI	GAGTC	2 cut(s)	1824, 2003
PpsI	GAGTC	2 cut(s)	1824, 2003
PshBI	ATTAAT	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	1938
Psp1406I	AACGTT	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	1621, 1651, 1890
PspEI	GGTNACC	1 cut(s)	1192
PspGI	CCWGG	3 cut(s)	1621, 1651, 1890
PspN4I	GGNNCC	3 cut(s)	92, 663, 1270
PspPI	GGNCC	4 cut(s)	690, 716, 789, 1614
PsuI	RGATCY	1 cut(s)	1268
RsaI	GTAC	9 cut(s)	92, 219, 686, 893, 950, 997, 1363, 1721, 1862
RsaNI	GTAC	9 cut(s)	91, 218, 685, 892, 949, 996, 1362, 1720, 1861
RseI	CAYNNNNRTG	2 cut(s)	1079, 1298
SacI	GAGCTC	1 cut(s)	1938
SaqAI	TTAA	7 cut(s)	420, 447, 462, 540, 1458, 1919, 1974
SatI	GCNGC	2 cut(s)	707, 1665
Sau3AI	GATC	5 cut(s)	132, 610, 859, 1268, 1655
Sau96I	GGNCC	4 cut(s)	690, 716, 789, 1614
ScaI	AGTACT	1 cut(s)	997
SchI	GAGTC	2 cut(s)	1825, 2003
ScrFI	CCNGG	4 cut(s)	689, 1623, 1653, 1892
SduI	GDGCHC	2 cut(s)	1293, 1938
SfaNI	GCATC	5 cut(s)	857, 1039, 1113, 1543, 1899
SfuI	TTCGAA	1 cut(s)	823
SinI	GGWCC	2 cut(s)	716, 1614
SmiMI	CAYNNNNRTG	2 cut(s)	1079, 1298
SmlI	CTYRAG	2 cut(s)	843, 1280
SmoI	CTYRAG	2 cut(s)	843, 1280
SpeI	ACTAGT	2 cut(s)	1366, 1588
SphI	GCATGC	2 cut(s)	1121, 2006
SsiI	CCGC	3 cut(s)	486, 707, 2006
SspMI	CTAG	7 cut(s)	101, 345, 522, 1199, 1304, 1367, 1589
SstI	GAGCTC	1 cut(s)	1938
StyD4I	CCNGG	4 cut(s)	687, 1621, 1651, 1890
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	9 cut(s)	217, 385, 496, 565, 641, 1000, 1439, 1522, 1740
TaiI	ACGT	3 cut(s)	179, 602, 1483
TaqI	TCGA	5 cut(s)	318, 768, 823, 1091, 1245
TatI	WGTACW	3 cut(s)	891, 995, 1719
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	2 cut(s)	1547, 1648
Tru1I	TTAA	7 cut(s)	420, 447, 462, 540, 1458, 1919, 1974
Tru9I	TTAA	7 cut(s)	420, 447, 462, 540, 1458, 1919, 1974
TscAI	CASTG	6 cut(s)	570, 591, 646, 744, 1300, 1527
TseFI	GTSAC	7 cut(s)	58, 641, 1139, 1192, 1318, 1471, 1483
TseI	GCWGC	1 cut(s)	1664
Tsp45I	GTSAC	7 cut(s)	58, 641, 1139, 1192, 1318, 1471, 1483
TspDTI	ATGAA	9 cut(s)	43, 115, 424, 638, 794, 944, 1033, 1179, 1553
TspGWI	ACGGA	2 cut(s)	1190, 1559
TspRI	CASTG	6 cut(s)	570, 591, 646, 744, 1300, 1527
VpaK11BI	GGWCC	2 cut(s)	716, 1614
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	5 cut(s)	232, 1253, 1560, 1627, 1698
XceI	RCATGY	2 cut(s)	1121, 2006
XcmI	CCANNNNNNNNNTGG	1 cut(s)	942
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	1899
XspI	CTAG	7 cut(s)	101, 345, 522, 1199, 1304, 1367, 1589
ZrmI	AGTACT	1 cut(s)	997
Zsp2I	ATGCAT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.