Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8318835.1

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 721

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8318835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

acccatattataaatcctaataagaagaccagacctgggaaccctattggttaccgtttgattccagggtcatttgtaaatcccctactggtggaggatgactacccacaaattcgtggtgctttcaccaactataatgtttgggttacaccatacaacaagtctgaaaaatgggtaggaggaccatatgttgatcaaagccgaggagatgataccttagcagtttggagcgaaaggaataggaagattgagaataaggacatagtgttgtggtacaccgttgggtttcaccacaatccttgccaagaggactgtcctacgatgccaacattgagcggtggatttgagctccggccagctaatttctttgagagcagtccagttcttaaagttagaacaacacctccttctaagcatgtaccatctcctaattgcaccaagcaaacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

149

Amino Acids

16.93

Weight (kDa)

8.79

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	336
AciI	CCGC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	2 cut(s)	275, 420
AfiI	CCNNNNNNNGG	2 cut(s)	36, 91
AjnI	CCWGG	2 cut(s)	34, 64
AloI	GAACNNNNNNTCC	2 cut(s)	388, 420
AluBI	AGCT	2 cut(s)	349, 359
AluI	AGCT	2 cut(s)	349, 359
Alw21I	GWGCWC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	118, 281
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	2 cut(s)	36, 66
BclI	TGATCA	1 cut(s)	193
BfaI	CTAG	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	36, 66
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	36, 66
BmsI	GCATC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	35, 65, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 91
Bse1I	ACTGG	2 cut(s)	93, 380
BseBI	CCWGG	2 cut(s)	36, 66
BseDI	CCNNGG	3 cut(s)	35, 65, 202
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	36, 91
BseNI	ACTGG	2 cut(s)	93, 380
BseRI	GAGGAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	352
BslI	CCNNNNNNNGG	2 cut(s)	36, 91
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	93, 380
BssECI	CCNNGG	3 cut(s)	35, 65, 202
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	36, 66
Bst4CI	ACNGT	3 cut(s)	56, 280, 314
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	217, 411
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	36, 66
BstNSI	RCATGY	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	34, 64
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	274, 419
CspCI	CAANNNNNGTGG	2 cut(s)	281, 316
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	4 cut(s)	201, 349, 355, 359
CviKI_1	RGCY	4 cut(s)	201, 349, 355, 359
CviQI	GTAC	2 cut(s)	274, 419
DdeI	CTNAG	2 cut(s)	217, 411
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	349
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	34, 64
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	1 cut(s)	419
FaiI	YATR	8 cut(s)	6, 11, 135, 154, 187, 189, 263, 417
FatI	CATG	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	193
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	352
Hin1II	CATG	1 cut(s)	419
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	118, 281
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	3 cut(s)	56, 280, 314
HpyCH4V	TGCA	1 cut(s)	435
HpyF3I	CTNAG	2 cut(s)	217, 411
Hsp92II	CATG	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	2 cut(s)	228, 354
LpnPI	CCDG	9 cut(s)	21, 43, 48, 51, 74, 78, 365, 369, 393
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	50, 145
MalI	GATC	1 cut(s)	195
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	37, 256
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	111, 361, 430
MnlI	CCTC	5 cut(s)	88, 173, 197, 301, 414
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	36, 66
MvaI	CCWGG	2 cut(s)	36, 66
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	227
NspI	RCATGY	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	34, 64
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	34, 64
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	275, 420
RsaNI	GTAC	2 cut(s)	274, 419
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	36, 66
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	37, 218, 351, 361, 406, 449
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	111, 361, 430
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	448
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	34, 64
TaaI	ACNGT	3 cut(s)	56, 280, 314
TasI	AATT	3 cut(s)	111, 361, 430
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.