Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

75237043 .. 75237531

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG538000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACAGATAATTTACAATATATGCCGCTGTCTCTCTATCTTCCAGCCTCTCTCTGTTCTCTTTCTCTCAGCAAACCGCATCGCCAACGTCGGCTCGTCCTCCGGAACCTCGACCTCCTCCTCGGCCTCGAGAACCGCGTCAAATACACCGTCTTCGAGGTCCTCAACGGCGACTACCTCCTCTCGAGATCGGGATCTGCTGCCTTGCTCCGATGTCGGAATCGCTGCCACAAAGGCGCCGTTTGGTGCTGCGACGTCTCTAGAGCAATCGGTGAAGCTATGGCTCAATTGAAACTCATCACCGCTCTTTTTGTCTCCTGCGTTCTTCTACCTTTGGCTCATGCCATTAGCTACTGCGCACTCAGGCATATGGACCGGACAAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

129

Amino Acids

14.59

Weight (kDa)

9.67

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc16I	TGCGCA	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	4 cut(s)	26, 77, 136, 303
AclWI	GGATC	1 cut(s)	202
AcyI	GRCGYC	2 cut(s)	237, 255
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	2 cut(s)	278, 351
AluI	AGCT	2 cut(s)	278, 351
Alw26I	GTCTC	3 cut(s)	36, 262, 319
AlwI	GGATC	1 cut(s)	202
Ama87I	CYCGRG	2 cut(s)	128, 184
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	200, 225, 249
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	2 cut(s)	239, 359
AspS9I	GGNCC	2 cut(s)	160, 373
AsuHPI	GGTGA	2 cut(s)	284, 292
AvaI	CYCGRG	2 cut(s)	128, 184
AvaII	GGWCC	2 cut(s)	160, 373
BanI	GGYRCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	187, 212, 236
BceAI	ACGGC	2 cut(s)	184, 224
BcoDI	GTCTC	3 cut(s)	36, 262, 319
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	4 cut(s)	26, 201, 226, 250
BlsI	GCNGC	4 cut(s)	27, 202, 227, 251
Bme18I	GGWCC	2 cut(s)	160, 373
BmeT110I	CYCGRG	2 cut(s)	128, 184
BmgT120I	GGNCC	2 cut(s)	160, 373
BmiI	GGNNCC	2 cut(s)	107, 238
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	237, 255
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	2 cut(s)	102, 375
Bse8I	GATNNNNATC	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	82, 376
BseRI	GAGGAG	3 cut(s)	107, 110, 170
BseXI	GCAGC	3 cut(s)	187, 212, 236
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	236
BsiHKCI	CYCGRG	2 cut(s)	128, 184
BsiSI	CCGG	2 cut(s)	103, 376
BsmAI	GTCTC	3 cut(s)	36, 262, 319
BsmBI	CGTCTC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	2 cut(s)	128, 184
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	188, 194
BspACI	CCGC	4 cut(s)	26, 77, 136, 303
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	81, 375
BspEI	TCCGGA	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	107, 238
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	188, 194
BssNI	GRCGYC	2 cut(s)	237, 255
Bst4CI	ACNGT	1 cut(s)	151
BstACI	GRCGYC	2 cut(s)	237, 255
BstDEI	CTNAG	2 cut(s)	68, 362
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 359
BstKTI	GATC	2 cut(s)	191, 197
BstMAI	GTCTC	3 cut(s)	36, 262, 319
BstMBI	GATC	2 cut(s)	188, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	187, 212, 236
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	239, 359
Cfr13I	GGNCC	2 cut(s)	160, 373
CseI	GACGC	1 cut(s)	127
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	7 cut(s)	47, 94, 126, 278, 284, 338, 351
CviKI_1	RGCY	7 cut(s)	47, 94, 126, 278, 284, 338, 351
DdeI	CTNAG	2 cut(s)	68, 362
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	2 cut(s)	190, 196
DpnII	GATC	2 cut(s)	188, 194
Eco47I	GGWCC	2 cut(s)	160, 373
Eco88I	CYCGRG	2 cut(s)	128, 184
EcoO109I	RGGNCCY	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	1 cut(s)	344
FaiI	YATR	6 cut(s)	21, 23, 281, 342, 369, 371
FatI	CATG	1 cut(s)	340
FauNDI	CATATG	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	26, 201, 226, 250
Fsp4HI	GCNGC	4 cut(s)	26, 201, 226, 250
FspBI	CTAG	1 cut(s)	261
FspI	TGCGCA	1 cut(s)	358
GlaI	GCGC	2 cut(s)	238, 358
GluI	GCNGC	4 cut(s)	26, 201, 226, 250
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	103, 376
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	239, 359
Hin1I	GRCGYC	2 cut(s)	237, 255
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	2 cut(s)	237, 357
HinP1I	GCGC	2 cut(s)	237, 357
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	103, 376
HphI	GGTGA	2 cut(s)	284, 292
Hpy188I	TCNGA	2 cut(s)	212, 219
Hpy188III	TCNNGA	6 cut(s)	103, 130, 184, 186, 192, 261
Hpy99I	CGWCG	2 cut(s)	93, 257
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	88, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	2 cut(s)	68, 362
HpySE526I	ACGT	2 cut(s)	88, 255
Hsp92I	GRCGYC	2 cut(s)	237, 255
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	2 cut(s)	237, 357
KasI	GGCGCC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	188, 194
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	4 cut(s)	57, 116, 331, 349
Lsp1109I	GCAGC	3 cut(s)	187, 212, 236
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	88, 255
MalI	GATC	2 cut(s)	190, 196
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	2 cut(s)	188, 194
MboII	GAAGA	3 cut(s)	32, 145, 317
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	2 cut(s)	10, 287
Mly113I	GGCGCC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	197
MroI	TCCGGA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	2 cut(s)	103, 376
MunI	CAATTG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	234
NarI	GGCGCC	1 cut(s)	237
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	2 cut(s)	188, 194
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	107, 238
NmeAIII	GCCGAG	1 cut(s)	102
NsbI	TGCGCA	1 cut(s)	358
PaeR7I	CTCGAG	2 cut(s)	128, 184
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	27, 202, 227, 251
PluTI	GGCGCC	1 cut(s)	240
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	107, 238
PspPI	GGNCC	2 cut(s)	160, 373
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	194
SatI	GCNGC	4 cut(s)	26, 201, 226, 250
Sau3AI	GATC	2 cut(s)	188, 194
Sau96I	GGNCC	2 cut(s)	160, 373
SfaNI	GCATC	1 cut(s)	88
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	2 cut(s)	128, 184
SinI	GGWCC	2 cut(s)	160, 373
SlaI	CTCGAG	2 cut(s)	128, 184
SmlI	CTYRAG	2 cut(s)	128, 184
SmoI	CTYRAG	2 cut(s)	128, 184
Sse9I	AATT	2 cut(s)	10, 287
SsiI	CCGC	4 cut(s)	26, 77, 136, 303
SspDI	GGCGCC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	91, 258
TaqI	TCGA	4 cut(s)	111, 129, 156, 185
TasI	AATT	2 cut(s)	10, 287
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	200, 225, 249
VpaK11BI	GGWCC	2 cut(s)	160, 373
XbaI	TCTAGA	1 cut(s)	260
XhoI	CTCGAG	2 cut(s)	128, 184
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.