Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Reverse (-)

38872438 .. 38873997

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACCCAACCGAGGACTGGTACTACAAAACCTTCTTCGATTGGGGAGAATTCGGGTTCGGCCTCTCAACAGTCTCGCTCGAGCCACTGACCGATTGCCCAAGCAATGCCAAGTTCATAGATGGTTACTATGCTGCCGGAGATGGCACGCCAGTGCAGATATCGAATGCCATTTGCATCTTTGAACGACATGCAGGCAACATCTTGTGGCGTCACACAGAAGTTACTATCCCAGATGAAGTGTTGGGTACTGATAAAAGAGTATTCAATGGAATATCTGCAGATAACGGAGGCCAGGGCCGATTTGACTCTGGTTGTGAGGATGGTTTCCATCACGAAATAGAGGTTGGATTAACAGGGGTGCTGGAAATTGCAGCGGCTAAATATACCCACATAAACCAAATAAAGGACGAAGTTTATGCCACTGCCAACTCCTTTGTGAAGAACAATTTCGTGACAAAACGAGTTACAGACCCAAACATACCAAGGAAGAGTTACTGGAATGTTGTAAGCGAAACCGCTAGGACGGAAGCGGATGCAAGGATTCACCTAGGCTTGAAGCCAGCCGACCTGGTTGTGGTAAATCCTAATAAGAAGACCAAATCCGGGAACCCTATTGGTTACCGTTTGATTCCAGGGTCATTTGTAAATCCCCTTGTGGTGGAGGATGACTACCCACAAATTCGTGGTGCTTTCAACAACTATAATGTTTGGGTTACACCGTACAACAAGTCTGAAAAATGGGTAGGAGGACCATATGTTGATCAAAGCCGAGGAGATGATACCTTAGCAGTCTGGAGCGAAAGGAATAGGAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

273

Amino Acids

30.55

Weight (kDa)

5.21

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	1 - 79	5e-23	Copper amine oxidase, enzyme domain
Cu_amine_oxid	PF01179	138 - 272	1.3e-25	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	377, 519, 533
AcsI	RAATTY	2 cut(s)	50, 681
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	3 cut(s)	23, 250, 725
AfiI	CCNNNNNNNGG	6 cut(s)	13, 18, 406, 577, 606, 661
AgsI	TTSAA	4 cut(s)	185, 268, 559, 697
AjnI	CCWGG	3 cut(s)	294, 570, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AleI	CACNNNNGTG	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	61, 292, 298
ApeKI	GCWGC	2 cut(s)	134, 374
ApoI	RAATTY	2 cut(s)	50, 681
Asp700I	GAANNNNTTC	1 cut(s)	449
AspA2I	CCTAGG	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	4, 298, 752
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	4, 752
AvrII	CCTAGG	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	121, 386
BccI	CCATC	4 cut(s)	116, 137, 317, 339
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	296, 572, 636
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	522, 551
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	3 cut(s)	135, 375, 378
BlnI	CCTAGG	1 cut(s)	550
BlsI	GCNGC	3 cut(s)	136, 376, 379
Bme1390I	CCNGG	4 cut(s)	296, 572, 607, 636
Bme18I	GGWCC	2 cut(s)	4, 752
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	4, 298, 752
BmiI	GGNNCC	2 cut(s)	6, 611
BmrFI	CCNGG	4 cut(s)	296, 572, 607, 636
BmsI	GCATC	2 cut(s)	186, 526
BpiI	GAAGAC	1 cut(s)	602
BpmI	CTGGAG	1 cut(s)	817
Bpu10I	CCTNAGC	1 cut(s)	787
BpuMI	CCSGG	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	211
BsaJI	CCNNGG	6 cut(s)	12, 295, 485, 550, 635, 772
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 18, 406, 577, 606, 661
Bse1I	ACTGG	3 cut(s)	23, 152, 503
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	3 cut(s)	296, 572, 636
BseDI	CCNNGG	6 cut(s)	12, 295, 485, 550, 635, 772
BseGI	GGATG	3 cut(s)	328, 541, 673
BseLI	CCNNNNNNNGG	6 cut(s)	13, 18, 406, 577, 606, 661
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	3 cut(s)	23, 152, 503
BseRI	GAGGAG	1 cut(s)	789
BseXI	GCAGC	2 cut(s)	121, 386
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	3 cut(s)	63, 294, 300
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	138, 606
BslI	CCNNNNNNNGG	6 cut(s)	13, 18, 406, 577, 606, 661
BsmAI	GTCTC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	63, 294, 300
BsoBI	CYCGRG	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	763
BspACI	CCGC	3 cut(s)	377, 519, 533
BspANI	GGCC	3 cut(s)	63, 294, 300
BspLI	GGNNCC	2 cut(s)	6, 611
BspMAI	CTGCAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	23, 152, 503
BssECI	CCNNGG	6 cut(s)	12, 295, 485, 550, 635, 772
BssMI	GATC	1 cut(s)	763
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	2 cut(s)	485, 550
Bst2UI	CCWGG	3 cut(s)	296, 572, 636
Bst4CI	ACNGT	3 cut(s)	73, 626, 723
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	211
BstC8I	GCNNGC	3 cut(s)	149, 196, 564
BstDEI	CTNAG	1 cut(s)	787
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	3 cut(s)	328, 541, 673
BstKTI	GATC	1 cut(s)	766
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	763
BstNI	CCWGG	3 cut(s)	296, 572, 636
BstNSI	RCATGY	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	4 cut(s)	294, 570, 605, 634
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	121, 386
BstV2I	GAAGAC	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	63, 294, 300
BtsCI	GGATG	3 cut(s)	328, 541, 673
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	3 cut(s)	86, 159, 423
Cac8I	GCNNGC	3 cut(s)	149, 196, 564
Cfr13I	GGNCC	3 cut(s)	4, 298, 752
CseI	GACGC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	570
Csp6I	GTAC	3 cut(s)	22, 249, 724
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	9 cut(s)	63, 85, 294, 300, 380, 555, 562, 566, 771
CviKI_1	RGCY	9 cut(s)	63, 85, 294, 300, 380, 555, 562, 566, 771
CviQI	GTAC	3 cut(s)	22, 249, 724
DdeI	CTNAG	1 cut(s)	787
DpnI	GATC	1 cut(s)	765
DpnII	GATC	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	485, 550
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	4, 752
Eco88I	CYCGRG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	294, 570, 634
EcoRV	GATATC	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	485, 550
ErhI	CCWWGG	2 cut(s)	485, 550
FaeI	CATG	1 cut(s)	194
FatI	CATG	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	135, 375, 378
FokI	GGATG	3 cut(s)	335, 548, 680
Fsp4HI	GCNGC	3 cut(s)	135, 375, 378
FspBI	CTAG	2 cut(s)	522, 551
GluI	GCNGC	3 cut(s)	135, 375, 378
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	3 cut(s)	63, 294, 300
HapII	CCGG	2 cut(s)	138, 606
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	3 cut(s)	308, 544, 631
HpaII	CCGG	2 cut(s)	138, 606
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	1 cut(s)	736
Hpy188III	TCNNGA	3 cut(s)	335, 454, 796
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	3 cut(s)	73, 626, 723
HpyCH4V	TGCA	6 cut(s)	157, 177, 194, 281, 374, 539
HpyF3I	CTNAG	1 cut(s)	787
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	1 cut(s)	763
LmnI	GCTCC	1 cut(s)	798
Lsp1109I	GCAGC	2 cut(s)	121, 386
LweI	GCATC	2 cut(s)	186, 526
MabI	ACCWGGT	1 cut(s)	570
MaeI	CTAG	2 cut(s)	522, 551
MaeIII	GTNAC	8 cut(s)	125, 212, 223, 454, 466, 494, 620, 715
MalI	GATC	1 cut(s)	765
MboI	GATC	1 cut(s)	763
MboII	GAAGA	4 cut(s)	28, 454, 502, 607
MluCI	AATT	4 cut(s)	50, 369, 448, 681
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	7, 74, 284, 313, 337, 658, 743, 767
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	138, 606
MspR9I	CCNGG	4 cut(s)	296, 572, 607, 636
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	3 cut(s)	296, 572, 636
NciI	CCSGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	1 cut(s)	763
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	6, 611
NmeAIII	GCCGAG	1 cut(s)	797
NmuCI	GTSAC	2 cut(s)	212, 454
NspI	RCATGY	1 cut(s)	194
OliI	CACNNNNGTG	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	80
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	544, 631
PfoI	TCCNGGA	1 cut(s)	605
PkrI	GCNGC	3 cut(s)	136, 376, 379
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	294, 570, 634
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	3 cut(s)	294, 570, 634
PspN4I	GGNNCC	2 cut(s)	6, 611
PspPI	GGNCC	3 cut(s)	4, 298, 752
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	3 cut(s)	23, 250, 725
RsaNI	GTAC	3 cut(s)	22, 249, 724
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	3 cut(s)	135, 375, 378
Sau3AI	GATC	1 cut(s)	763
Sau96I	GGNCC	3 cut(s)	4, 298, 752
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	296, 572, 607, 636
SetI	ASST	5 cut(s)	35, 348, 552, 573, 788
SexAI	ACCWGGT	1 cut(s)	570
SfaNI	GCATC	2 cut(s)	186, 526
SfcI	CTRYAG	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	4, 752
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	50, 369, 448, 681
SsiI	CCGC	3 cut(s)	377, 519, 533
SspMI	CTAG	2 cut(s)	522, 551
StyD4I	CCNGG	4 cut(s)	294, 570, 605, 634
StyI	CCWWGG	2 cut(s)	485, 550
TaaI	ACNGT	3 cut(s)	73, 626, 723
TaqI	TCGA	3 cut(s)	39, 81, 164
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	4 cut(s)	50, 369, 448, 681
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	544, 631
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	3 cut(s)	93, 159, 430
TseFI	GTSAC	2 cut(s)	212, 454
TseI	GCWGC	2 cut(s)	134, 374
Tsp45I	GTSAC	2 cut(s)	212, 454
TspDTI	ATGAA	2 cut(s)	106, 252
TspGWI	ACGGA	2 cut(s)	303, 542
TspRI	CASTG	3 cut(s)	93, 159, 430
VpaK11BI	GGWCC	2 cut(s)	4, 752
XapI	RAATTY	2 cut(s)	50, 681
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	522, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.