Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Reverse (-)

19842696 .. 19843930

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15893.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATTGAAAGAATAACTGTGAGTGATAATTTGATGTTTCTCAAGTACTTTACTTCTCAAATTTTTTTTCTTATGACTGACGAAAGAGAAAACGGATTGGTGGATGCAACTGATAAGCTTTACTATCTTGCTTGTAAACCGGATTTACGTGTTCATACATACACTGGTTGTATTGTGGATGGAGTTCGATTTCACACAAAAGATCTTGATGATCATCGGACAACACAAAACAGTGGGGTGTATGTCCCCGGAGTTTTCACGGGTGGAAGTCATGATTTTTATGGTGTTTTGTTAAGTATTGTGAAGTTAACATACTTGGATAAGAATGAGGTTTTCTTATTTAAGTGTAAATGGTTCAACACTGACGAATCGAGTAGGGTCGAAAGGAGAAGAATGATACGTTATGATTATAATCTTACTAGTATTAATACAACCTCCACGTGGTATGATGATGAACCATTTATACTTGCTACAGAAGCTCAACAAGTGTTTCATCTTGATGACTATAAGTTGGATTCTCATTGGAAAGTTGTACAAAAGGTGCAATTGAGAAACGTGTGGGATGTTCCAGAGGTCGAGGATACTAGTGGAGAGATAGATGAGGATGATGTTGATCCTGTGGCAAATGGTGCTTATCAACAAGACGAGTTTAATGATATTCAGTGGTTTGTTCAAGAAGATGGTCTTCAAACTCCTGAATTGCATCTTGACGATATTGAGCCGGAAGTTGTTGCTTCAGATGTTGTGAACAATGAATGGATGAGTGAGGGTAGGGGAGACAATTACATAAATGATGATACTGAAGAAGAAGATGACCCTGCACACAGTGATGAAGAAGCAATCACTTCAAGTGATGACGAGGATAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transposase_21

Protein Analysis

291

Amino Acids

33.69

Weight (kDa)

4.18

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4216	PF13952	102 - 178	1.3e-19	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	2 cut(s)	720, 822
AcvI	CACGTG	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	827
AfaI	GTAC	2 cut(s)	47, 534
AfiI	CCNNNNNNNGG	1 cut(s)	441
AflIII	ACRYGT	2 cut(s)	148, 555
AgsI	TTSAA	5 cut(s)	8, 358, 674, 689, 849
AhlI	ACTAGT	2 cut(s)	419, 584
AluBI	AGCT	2 cut(s)	118, 479
AluI	AGCT	2 cut(s)	118, 479
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	60
AseI	ATTAAT	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbrPI	CACGTG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	677
BccI	CCATC	2 cut(s)	173, 674
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	771
BcuI	ACTAGT	2 cut(s)	419, 584
BfaI	CTAG	2 cut(s)	420, 585
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	2 cut(s)	94, 712
BpiI	GAAGAC	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	2 cut(s)	149, 441
BsaBI	GATNNNNATC	3 cut(s)	213, 411, 612
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	3 cut(s)	213, 411, 612
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	5 cut(s)	109, 184, 568, 610, 765
BseJI	GATNNNNATC	3 cut(s)	213, 411, 612
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	804
BsiSI	CCGG	3 cut(s)	140, 249, 722
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	202, 211, 613
BspHI	TCATGA	1 cut(s)	271
BspPI	GGATC	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	202, 211, 613
Bst4CI	ACNGT	3 cut(s)	19, 233, 827
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	2 cut(s)	149, 441
BstF5I	GGATG	5 cut(s)	109, 184, 568, 610, 765
BstKTI	GATC	3 cut(s)	205, 214, 616
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	3 cut(s)	202, 211, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 629
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	574
BtsCI	GGATG	5 cut(s)	109, 184, 568, 610, 765
BtsIMutI	CAGTG	5 cut(s)	162, 238, 360, 668, 832
CciI	TCATGA	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	46, 533
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	3 cut(s)	118, 479, 721
CviKI_1	RGCY	3 cut(s)	118, 479, 721
CviQI	GTAC	2 cut(s)	46, 533
DpnI	GATC	3 cut(s)	204, 213, 615
DpnII	GATC	3 cut(s)	202, 211, 613
DraIII	CACNNNGTG	1 cut(s)	827
Eco57I	CTGAAG	2 cut(s)	720, 822
Eco72I	CACGTG	1 cut(s)	441
FaeI	CATG	1 cut(s)	275
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	211
FokI	GGATG	5 cut(s)	116, 191, 575, 617, 772
FspBI	CTAG	2 cut(s)	420, 585
HapII	CCGG	3 cut(s)	140, 249, 722
Hin1II	CATG	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	368, 515
HpaI	GTTAAC	1 cut(s)	309
HpaII	CCGG	3 cut(s)	140, 249, 722
Hpy166II	GTNNAC	3 cut(s)	137, 309, 748
Hpy188I	TCNGA	2 cut(s)	219, 739
Hpy188III	TCNNGA	7 cut(s)	206, 272, 497, 569, 674, 695, 707
Hpy8I	GTNNAC	3 cut(s)	137, 309, 748
HpyCH4III	ACNGT	3 cut(s)	19, 233, 827
HpyCH4IV	ACGT	4 cut(s)	148, 400, 440, 555
HpyCH4V	TGCA	4 cut(s)	107, 544, 703, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 629
HpySE526I	ACGT	4 cut(s)	148, 400, 440, 555
Hsp92II	CATG	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	202, 211, 613
LpnPI	CCDG	8 cut(s)	150, 153, 262, 582, 630, 708, 735, 831
LweI	GCATC	2 cut(s)	94, 712
MaeI	CTAG	2 cut(s)	420, 585
MaeII	ACGT	4 cut(s)	148, 400, 440, 555
MalI	GATC	3 cut(s)	204, 213, 615
MboI	GATC	3 cut(s)	202, 211, 613
MboII	GAAGA	7 cut(s)	402, 677, 689, 815, 818, 821, 845
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	5 cut(s)	28, 60, 545, 698, 781
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	322, 445, 565, 571, 595, 760, 853
MseI	TTAA	5 cut(s)	293, 308, 342, 426, 651
MslI	CAYNNNNRTG	2 cut(s)	498, 828
MspI	CCGG	3 cut(s)	140, 249, 722
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	476, 629
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	202, 211, 613
NlaIII	CATG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	368, 515
PmaCI	CACGTG	1 cut(s)	441
PmlI	CACGTG	1 cut(s)	441
Ppu21I	YACGTR	2 cut(s)	149, 441
PshBI	ATTAAT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	441
PsrI	GAACNNNNNNTAC	2 cut(s)	447, 479
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	47, 534
RsaNI	GTAC	2 cut(s)	46, 533
RseI	CAYNNNNRTG	2 cut(s)	498, 828
SaqAI	TTAA	5 cut(s)	293, 308, 342, 426, 651
Sau3AI	GATC	3 cut(s)	202, 211, 613
ScaI	AGTACT	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	94, 712
SfcI	CTRYAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	2 cut(s)	498, 828
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	2 cut(s)	419, 584
Sse9I	AATT	5 cut(s)	28, 60, 545, 698, 781
SspMI	CTAG	2 cut(s)	420, 585
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	3 cut(s)	19, 233, 827
TaiI	ACGT	4 cut(s)	151, 403, 443, 558
TaqI	TCGA	4 cut(s)	187, 371, 381, 576
TasI	AATT	5 cut(s)	28, 60, 545, 698, 781
TatI	WGTACW	2 cut(s)	45, 532
TfiI	GAWTC	2 cut(s)	368, 515
Tru1I	TTAA	5 cut(s)	293, 308, 342, 426, 651
Tru9I	TTAA	5 cut(s)	293, 308, 342, 426, 651
TscAI	CASTG	5 cut(s)	169, 238, 367, 668, 832
TspDTI	ATGAA	5 cut(s)	143, 468, 482, 768, 846
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	5 cut(s)	169, 238, 367, 668, 832
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	1 cut(s)	60
XspI	CTAG	2 cut(s)	420, 585
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.