Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011112.1

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Reverse (-)

38831 .. 39301

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011112.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgaagtttgacaaccatttgacgtcattgtacgttaaaaaccaatggtaccagcatgatccttatgtgctagcaaaacaagcccataaggtgttttatcttgatgacctgaaattgggacatccttggaaagttgtccagaagtttcaatataggaacttgtgtgatgttccagaaagagaagaagacaaagatcttatagaccgtgataatgaccctggtgatgtggatgatgacgctaatatatgggaggttcacgtagaagatgatgaaactagtacatctttgtgcaaacatgatgtggtacctgaaactattatcgtcaacaacacaaataaagaaaataatgcagcagatgacggtgattttgttgatgatgattctacggatgatgatcttatgttggagcataatagagctcttggtgaagaagaattactgggtgatcctggtgacacgaatagtgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218

Protein Analysis

156

Amino Acids

18.03

Weight (kDa)

4.21

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
Acc65I	GGTACC	2 cut(s)	48, 304
AccB1I	GGYRCC	2 cut(s)	48, 304
AclWI	GGATC	2 cut(s)	53, 440
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	4 cut(s)	32, 50, 280, 306
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	149
AhlI	ACTAGT	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	217, 448
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	53, 440
ApeKI	GCWGC	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp718I	GGTACC	2 cut(s)	48, 304
AsuHPI	GGTGA	5 cut(s)	233, 374, 437, 455, 464
AsuNHI	GCTAGC	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	48, 304
BanII	GRGCYC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	219, 450
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	3 cut(s)	71, 276, 469
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	219, 450
BmiI	GGNNCC	2 cut(s)	50, 306
BmrFI	CCNGG	2 cut(s)	219, 450
BmrI	ACTGGG	1 cut(s)	449
BmtI	GCTAGC	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	125, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	219, 450
BseDI	CCNNGG	2 cut(s)	125, 217
BseGI	GGATG	3 cut(s)	121, 235, 394
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	362
BshNI	GGYRCC	2 cut(s)	48, 304
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	58, 193, 394, 445
BspLI	GGNNCC	2 cut(s)	50, 306
BspOI	GCTAGC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	53, 440
BspT107I	GGYRCC	2 cut(s)	48, 304
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	125, 217
BssMI	GATC	4 cut(s)	58, 193, 394, 445
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	219, 450
Bst4CI	ACNGT	2 cut(s)	206, 362
BstACI	GRCGYC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	121, 235, 394
BstKTI	GATC	4 cut(s)	61, 196, 397, 448
BstMBI	GATC	4 cut(s)	58, 193, 394, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	219, 450
BstSCI	CCNGG	2 cut(s)	217, 448
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	121, 235, 394
Cac8I	GCNNGC	1 cut(s)	72
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	4 cut(s)	31, 49, 279, 305
CviAII	CATG	2 cut(s)	56, 296
CviJI	RGCY	2 cut(s)	83, 419
CviKI_1	RGCY	2 cut(s)	83, 419
CviQI	GTAC	4 cut(s)	31, 49, 279, 305
DpnI	GATC	4 cut(s)	60, 195, 396, 447
DpnII	GATC	4 cut(s)	58, 193, 394, 445
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	217, 448
EcoT14I	CCWWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	59, 299
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	55, 295
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	3 cut(s)	108, 242, 401
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	3 cut(s)	71, 276, 469
GluI	GCNGC	1 cut(s)	351
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	59, 299
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	380
HphI	GGTGA	5 cut(s)	233, 374, 437, 455, 464
Hpy166II	GTNNAC	2 cut(s)	256, 325
Hpy188III	TCNNGA	3 cut(s)	101, 139, 173
Hpy8I	GTNNAC	2 cut(s)	256, 325
HpyCH4III	ACNGT	2 cut(s)	206, 362
HpyCH4IV	ACGT	3 cut(s)	23, 33, 258
HpyCH4V	TGCA	2 cut(s)	291, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	3 cut(s)	23, 33, 258
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	59, 299
KpnI	GGTACC	2 cut(s)	52, 308
Kzo9I	GATC	4 cut(s)	58, 193, 394, 445
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	3 cut(s)	71, 276, 469
MaeII	ACGT	3 cut(s)	23, 33, 258
MaeIII	GTNAC	2 cut(s)	452, 464
MalI	GATC	4 cut(s)	60, 195, 396, 447
MboI	GATC	4 cut(s)	58, 193, 394, 445
MboII	GAAGA	5 cut(s)	194, 197, 275, 440, 443
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	2 cut(s)	113, 434
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	219, 450
MvaI	CCWGG	2 cut(s)	219, 450
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	58, 193, 394, 445
NheI	GCTAGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	59, 299
NlaIV	GGNNCC	2 cut(s)	50, 306
NmuCI	GTSAC	2 cut(s)	452, 464
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	217, 448
PspGI	CCWGG	2 cut(s)	217, 448
PspN4I	GGNNCC	2 cut(s)	50, 306
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	4 cut(s)	32, 50, 280, 306
RsaNI	GTAC	4 cut(s)	31, 49, 279, 305
RseI	CAYNNNNRTG	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	58, 193, 394, 445
ScrFI	CCNGG	2 cut(s)	219, 450
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	8 cut(s)	26, 36, 93, 111, 255, 261, 310, 421
SmiMI	CAYNNNNRTG	1 cut(s)	286
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	2 cut(s)	113, 434
SspMI	CTAG	3 cut(s)	71, 276, 469
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	217, 448
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	206, 362
TaiI	ACGT	3 cut(s)	26, 36, 261
TasI	AATT	2 cut(s)	113, 434
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	452, 464
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	2 cut(s)	452, 464
TspDTI	ATGAA	2 cut(s)	17, 285
TspGWI	ACGGA	1 cut(s)	401
XspI	CTAG	3 cut(s)	71, 276, 469
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.