Rmu_sc0000149.1_g000029

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000149.1
OG0001541
Physical Location & Seq
Reverse (-)
105833 .. 106303
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000149.1_g000029.1.cds

Sequence Viewer

Length: 471 bp
atgaagtttgactaccatttgacgtcgttgaacgttagaaaccaatggtaccagcatgatccttatgtgctagcaaaacaagctctcaaggtgttttatcttgatgacctgaaattgaggcatccttggaaagttgtccagaagattcaatataggcacttgtgggatgttccaaaaagaaaagaagacgaagatcttgtagaccgtgataatgaccctggtgacgaggacgatgacgctaatgtatgggaggttcacgtagaagatgatgaaactagtacatctttgcgcatacatgatgtagaacctgaaactattatcatcaacaacaaaaataaagaaaagaatgcagtacatgacggtgattttattgacgatgattctacgaatgataatcttatgttggagcatactagagctcttggtgaagaagaattactgggtgatcatagtgacacaaatagtgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

156

Amino Acids

18.45

Weight (kDa)

4.56

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
Acc16I TGCGCA 1 cut(s) 290
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 201
AclI AACGTT 1 cut(s) 33
AclWI GGATC 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 3 cut(s) 50, 280, 354
AgsI TTSAA 2 cut(s) 31, 149
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 2 cut(s) 83, 419
AluI AGCT 2 cut(s) 83, 419
Alw21I GWGCWC 1 cut(s) 421
AlwI GGATC 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 291
AsuHPI GGTGA 4 cut(s) 233, 374, 437, 455
AsuNHI GCTAGC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 421
BarI GAAGNNNNNNTAC 3 cut(s) 28, 420, 452
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 445
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 4 cut(s) 71, 276, 414, 469
BglII AGATCT 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 1 cut(s) 130
BmtI GCTAGC 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 125, 217
Bse1I ACTGG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 125, 217
BseGI GGATG 2 cut(s) 121, 172
BseNI ACTGG 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 3 cut(s) 58, 193, 445
BspLI GGNNCC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 74
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 125, 217
BssMI GATC 3 cut(s) 58, 193, 445
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 206, 362
BstACI GRCGYC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 72
BstF5I GGATG 2 cut(s) 121, 172
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 3 cut(s) 61, 196, 448
BstMBI GATC 3 cut(s) 58, 193, 445
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 2 cut(s) 121, 172
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 291
CseI GACGC 1 cut(s) 245
Csp6I GTAC 3 cut(s) 49, 279, 353
CviAII CATG 3 cut(s) 56, 296, 356
CviJI RGCY 2 cut(s) 83, 419
CviKI_1 RGCY 2 cut(s) 83, 419
CviQI GTAC 3 cut(s) 49, 279, 353
DpnI GATC 3 cut(s) 60, 195, 447
DpnII GATC 3 cut(s) 58, 193, 445
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 3 cut(s) 59, 299, 359
FatI CATG 3 cut(s) 55, 295, 355
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 201
FokI GGATG 2 cut(s) 108, 179
FriOI GRGCYC 1 cut(s) 421
FspBI CTAG 4 cut(s) 71, 276, 414, 469
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 1 cut(s) 290
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 59, 299, 359
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 145, 380
HphI GGTGA 4 cut(s) 233, 374, 437, 455
Hpy166II GTNNAC 2 cut(s) 202, 256
Hpy188III TCNNGA 2 cut(s) 101, 139
Hpy8I GTNNAC 2 cut(s) 202, 256
Hpy99I CGWCG 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 206, 362
HpyCH4IV ACGT 3 cut(s) 23, 33, 258
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 3 cut(s) 23, 33, 258
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 59, 299, 359
HspAI GCGC 1 cut(s) 289
KpnI GGTACC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 3 cut(s) 58, 193, 445
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 7 cut(s) 65, 122, 152, 204, 231, 321, 425
LweI GCATC 1 cut(s) 130
MaeI CTAG 4 cut(s) 71, 276, 414, 469
MaeII ACGT 3 cut(s) 23, 33, 258
MaeIII GTNAC 3 cut(s) 221, 452, 464
MalI GATC 3 cut(s) 60, 195, 447
MboI GATC 3 cut(s) 58, 193, 445
MboII GAAGA 6 cut(s) 154, 197, 203, 275, 440, 443
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 113, 434
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 3 cut(s) 111, 220, 244
MslI CAYNNNNRTG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 58, 193, 445
NheI GCTAGC 1 cut(s) 70
NlaIII CATG 3 cut(s) 59, 299, 359
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 3 cut(s) 221, 452, 464
NsbI TGCGCA 1 cut(s) 290
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 145, 380
Ppu21I YACGTR 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 421
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 237, 269
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 50, 280, 354
RsaNI GTAC 3 cut(s) 49, 279, 353
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 1 cut(s) 421
Sau3AI GATC 3 cut(s) 58, 193, 445
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 421
SetI ASST 9 cut(s) 26, 36, 85, 93, 111, 255, 261, 310, 421
SfaNI GCATC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 2 cut(s) 113, 434
SspMI CTAG 4 cut(s) 71, 276, 414, 469
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 206, 362
TaiI ACGT 3 cut(s) 26, 36, 261
TasI AATT 2 cut(s) 113, 434
TatI WGTACW 2 cut(s) 278, 352
TfiI GAWTC 2 cut(s) 145, 380
TseFI GTSAC 3 cut(s) 221, 452, 464
Tsp45I GTSAC 3 cut(s) 221, 452, 464
TspDTI ATGAA 2 cut(s) 17, 285
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 4 cut(s) 71, 276, 414, 469
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.