Rh5AG465700

tetratricopeptide repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
79795350 .. 79829601
34252 bp
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UTR
Exon/CDS
Intron
Rh5AG465700.1

Sequence Viewer

Length: 258 bp
ATGCAGGAAGAGAGTCTTGAAAATCCTCAATTACATCAAGAGGATATTGAGCCCGAAGTCATTGCTTCAAATGTCGAGAGTGACGAATGGATAGATGATGTAACAGTGACAAAATGTCGAAACGTCTTCGTTCGAACGTTTCCGTTGCCCAAAAGGCTAATGTTGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTAATAGTGCCATACAAAGCTTTGACAAAGCATTAGCCATCAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

4.58

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 137
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 2 cut(s) 20, 69
AhdI GACNNNNNGTC 1 cut(s) 114
AluBI AGCT 2 cut(s) 188, 228
AluI AGCT 2 cut(s) 188, 228
Alw21I GWGCWC 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 133
BanII GRGCYC 2 cut(s) 54, 190
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BglI GCCNNNNNGGC 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 190
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 54, 190
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 189
BstEII GGTNACC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstPI GGTNACC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 111
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 168
CviJI RGCY 5 cut(s) 52, 157, 188, 228, 245
CviKI_1 RGCY 5 cut(s) 52, 157, 188, 228, 245
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 189
DriI GACNNNNNGTC 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 2 cut(s) 54, 190
Eco53kI GAGCTC 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 54, 190
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 171
FaiI YATR 2 cut(s) 169, 221
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 54, 190
Hin1II CATG 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 17, 38, 76
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 123, 137
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 2 cut(s) 123, 137
Hsp92II CATG 1 cut(s) 171
MaeII ACGT 2 cut(s) 123, 137
MaeIII GTNAC 4 cut(s) 80, 100, 106, 172
MboII GAAGA 2 cut(s) 20, 118
MhlI GDGCHC 2 cut(s) 54, 190
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 2 cut(s) 34, 36
MseI TTAA 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 154
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 80, 106
NspV TTCGAA 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 137
PspEI GGTNACC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 207
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 194
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 2 cut(s) 54, 190
SetI ASST 5 cut(s) 126, 140, 190, 211, 230
SfuI TTCGAA 1 cut(s) 133
SgeI CNNG 7 cut(s) 17, 29, 50, 65, 88, 180, 191
Sse9I AATT 1 cut(s) 29
SstI GAGCTC 1 cut(s) 190
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 126, 140
TaqI TCGA 3 cut(s) 75, 118, 133
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 252
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 80, 106
Tsp45I GTSAC 2 cut(s) 80, 106
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.