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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 299 |
| AcsI | RAATTY | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 321 |
| AflIII | ACRYGT | 1 cut(s) | 81 |
| AgsI | TTSAA | 5 cut(s) | 62, 149, 212, 231, 236 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 192, 224 |
| AluBI | AGCT | 1 cut(s) | 38 |
| AluI | AGCT | 1 cut(s) | 38 |
| ApoI | RAATTY | 1 cut(s) | 273 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 207 |
| AspLEI | GCGC | 1 cut(s) | 300 |
| AspS9I | GGNCC | 1 cut(s) | 290 |
| AsuHPI | GGTGA | 1 cut(s) | 326 |
| AvaII | GGWCC | 1 cut(s) | 290 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 274, 307 |
| BccI | CCATC | 3 cut(s) | 151, 281, 305 |
| BfaI | CTAG | 2 cut(s) | 23, 39 |
| Bme18I | GGWCC | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 1 cut(s) | 290 |
| BoxI | GACNNNNGTC | 1 cut(s) | 141 |
| Bsa29I | ATCGAT | 2 cut(s) | 69, 327 |
| BsaBI | GATNNNNATC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 1 cut(s) | 265 |
| Bse8I | GATNNNNATC | 1 cut(s) | 189 |
| BseCI | ATCGAT | 2 cut(s) | 69, 327 |
| BseDI | CCNNGG | 1 cut(s) | 265 |
| BseGI | GGATG | 1 cut(s) | 397 |
| BseJI | GATNNNNATC | 1 cut(s) | 189 |
| BshVI | ATCGAT | 2 cut(s) | 69, 327 |
| BslFI | GGGAC | 1 cut(s) | 356 |
| BsmFI | GGGAC | 1 cut(s) | 356 |
| Bsp143I | GATC | 3 cut(s) | 66, 70, 252 |
| BspDI | ATCGAT | 2 cut(s) | 69, 327 |
| BssECI | CCNNGG | 1 cut(s) | 265 |
| BssMI | GATC | 3 cut(s) | 66, 70, 252 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| BstF5I | GGATG | 1 cut(s) | 397 |
| BstHHI | GCGC | 1 cut(s) | 300 |
| BstKTI | GATC | 3 cut(s) | 69, 73, 255 |
| BstMBI | GATC | 3 cut(s) | 66, 70, 252 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 141 |
| Bsu15I | ATCGAT | 2 cut(s) | 69, 327 |
| BsuTUI | ATCGAT | 2 cut(s) | 69, 327 |
| BtsCI | GGATG | 1 cut(s) | 397 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| CfoI | GCGC | 1 cut(s) | 300 |
| Cfr13I | GGNCC | 1 cut(s) | 290 |
| ClaI | ATCGAT | 2 cut(s) | 69, 327 |
| Csp6I | GTAC | 1 cut(s) | 320 |
| CviJI | RGCY | 1 cut(s) | 38 |
| CviKI_1 | RGCY | 1 cut(s) | 38 |
| CviQI | GTAC | 1 cut(s) | 320 |
| DpnI | GATC | 3 cut(s) | 68, 72, 254 |
| DpnII | GATC | 3 cut(s) | 66, 70, 252 |
| Eco47I | GGWCC | 1 cut(s) | 290 |
| FaiI | YATR | 4 cut(s) | 75, 87, 92, 384 |
| FaqI | GGGAC | 1 cut(s) | 356 |
| FspAI | RTGCGCAY | 1 cut(s) | 299 |
| FspBI | CTAG | 2 cut(s) | 23, 39 |
| FspI | TGCGCA | 1 cut(s) | 299 |
| GlaI | GCGC | 1 cut(s) | 299 |
| HhaI | GCGC | 1 cut(s) | 300 |
| Hin6I | GCGC | 1 cut(s) | 298 |
| HinP1I | GCGC | 1 cut(s) | 298 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HinfI | GANTC | 2 cut(s) | 149, 244 |
| HphI | GGTGA | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188I | TCNGA | 2 cut(s) | 182, 391 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 146 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| Hpy99I | CGWCG | 2 cut(s) | 311, 368 |
| HpyAV | CCTTC | 1 cut(s) | 212 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4IV | ACGT | 4 cut(s) | 81, 142, 163, 318 |
| HpyCH4V | TGCA | 1 cut(s) | 170 |
| HpySE526I | ACGT | 4 cut(s) | 81, 142, 163, 318 |
| HspAI | GCGC | 1 cut(s) | 298 |
| Kzo9I | GATC | 3 cut(s) | 66, 70, 252 |
| LpnPI | CCDG | 1 cut(s) | 108 |
| MaeI | CTAG | 2 cut(s) | 23, 39 |
| MaeII | ACGT | 4 cut(s) | 81, 142, 163, 318 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 3 cut(s) | 68, 72, 254 |
| MboI | GATC | 3 cut(s) | 66, 70, 252 |
| MboII | GAAGA | 3 cut(s) | 144, 219, 347 |
| MfeI | CAATTG | 2 cut(s) | 231, 258 |
| MluCI | AATT | 4 cut(s) | 12, 231, 258, 273 |
| MmeI | TCCRAC | 1 cut(s) | 29 |
| MnlI | CCTC | 2 cut(s) | 36, 275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 207 |
| MseI | TTAA | 2 cut(s) | 33, 400 |
| MunI | CAATTG | 2 cut(s) | 231, 258 |
| NdeII | GATC | 3 cut(s) | 66, 70, 252 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| NsbI | TGCGCA | 1 cut(s) | 299 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 315, 324 |
| PdmI | GAANNNNTTC | 1 cut(s) | 207 |
| PfeI | GAWTC | 2 cut(s) | 149, 244 |
| PshAI | GACNNNNGTC | 1 cut(s) | 141 |
| PspPI | GGNCC | 1 cut(s) | 290 |
| RsaI | GTAC | 1 cut(s) | 321 |
| RsaNI | GTAC | 1 cut(s) | 320 |
| SaqAI | TTAA | 2 cut(s) | 33, 400 |
| Sau3AI | GATC | 3 cut(s) | 66, 70, 252 |
| Sau96I | GGNCC | 1 cut(s) | 290 |
| SetI | ASST | 8 cut(s) | 33, 40, 84, 145, 166, 267, 321, 325 |
| SinI | GGWCC | 1 cut(s) | 290 |
| Sse9I | AATT | 4 cut(s) | 12, 231, 258, 273 |
| SspMI | CTAG | 2 cut(s) | 23, 39 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| TaiI | ACGT | 4 cut(s) | 84, 145, 166, 321 |
| TaqI | TCGA | 5 cut(s) | 69, 123, 155, 251, 327 |
| TasI | AATT | 4 cut(s) | 12, 231, 258, 273 |
| TfiI | GAWTC | 2 cut(s) | 149, 244 |
| Tru1I | TTAA | 2 cut(s) | 33, 400 |
| Tru9I | TTAA | 2 cut(s) | 33, 400 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 1 cut(s) | 348 |
| TspRI | CASTG | 1 cut(s) | 352 |
| VpaK11BI | GGWCC | 1 cut(s) | 290 |
| XapI | RAATTY | 1 cut(s) | 273 |
| XbaI | TCTAGA | 1 cut(s) | 22 |
| XmnI | GAANNNNTTC | 1 cut(s) | 207 |
| XspI | CTAG | 2 cut(s) | 23, 39 |