Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Reverse (-)

57937419 .. 57938262

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAGAATAGTGGGATCATGGTTCCAAGATCACATAATAACAGAGAAAGTGACTTTTACTGGCAGTTGGTTAGCATCGTCAAATTAGATTTTCCGTACGGCTATTCAGTTTTTCTATCCAAAGGTGAGTGGTTTAATACAATAAATACAAAGAAGAGAATAAGAACCATTCGTGATTACCATTTGACATCGTTGAATGTAAACGATAAATGGTACGTAAAAGATCCGTATATACTTGCAAAGCAATCACAACAAGTGTTTTACCTTGATGATCCGAAGTTAGGTGCTAGTTGGAAAGTCATTCAAAAGATTCGACACAGACATATATGGGATGTGCTTGAGAATGAAGAATCTCATGATACCGAAACAAGTTATGTTGATGGGGTAGACCAAGAAGAAGAGGCTAGCAATATCACTCATCCCATTGAAGAGAATGTTAATTCAATGCCAACATTTTGTGGAAGAGATGTCGAACCTGAAATTGTTGGTTTGAGTAGCAAAGATATTGAACAAAGCAACATAAGTGACAATGATTTTATCGATTATAATCCTCTAGATGAGGAATTACTATCAGGAGATGAAGATAACACTCGAGAAAGTGATGGATACAGTGACTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

207

Amino Acids

24.2

Weight (kDa)

4.53

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4216	PF13952	29 - 101	1.1e-16	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	387
AclWI	GGATC	3 cut(s)	23, 218, 266
AfaI	GTAC	2 cut(s)	98, 215
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	196, 305, 428, 444, 509
AlwI	GGATC	3 cut(s)	23, 218, 266
Ama87I	CYCGRG	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	137
AsuNHI	GCTAGC	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	591
BccI	CCATC	2 cut(s)	374, 596
BceAI	ACGGC	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	599
BfaI	CTAG	3 cut(s)	288, 405, 554
BfuI	GTATCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	591
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	540
BseGI	GGATG	2 cut(s)	337, 418
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	591
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	15, 29, 223, 271
BspDI	ATCGAT	1 cut(s)	540
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	24
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	3 cut(s)	23, 218, 266
BsrI	ACTGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	15, 29, 223, 271
Bst4CI	ACNGT	1 cut(s)	611
Bst6I	CTCTTC	4 cut(s)	149, 393, 423, 457
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	337, 418
BstKTI	GATC	4 cut(s)	18, 32, 226, 274
BstMBI	GATC	4 cut(s)	15, 29, 223, 271
BstSNI	TACGTA	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	540
BsuI	GTATCC	1 cut(s)	599
BsuTUI	ATCGAT	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	337, 418
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	97, 214
CviAII	CATG	2 cut(s)	19, 356
CviJI	RGCY	2 cut(s)	102, 404
CviKI_1	RGCY	2 cut(s)	102, 404
CviQI	GTAC	2 cut(s)	97, 214
DpnI	GATC	4 cut(s)	17, 31, 225, 273
DpnII	GATC	4 cut(s)	15, 29, 223, 271
Eam1104I	CTCTTC	4 cut(s)	149, 393, 423, 457
EarI	CTCTTC	4 cut(s)	149, 393, 423, 457
Eco105I	TACGTA	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	591
FaeI	CATG	2 cut(s)	22, 359
FatI	CATG	2 cut(s)	18, 355
FblI	GTMKAC	1 cut(s)	387
FokI	GGATG	2 cut(s)	344, 405
FspBI	CTAG	3 cut(s)	288, 405, 554
Hin1II	CATG	2 cut(s)	22, 359
HinfI	GANTC	2 cut(s)	310, 350
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	202, 388
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	5 cut(s)	173, 356, 554, 573, 593
Hpy8I	GTNNAC	2 cut(s)	202, 388
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	4, 239
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	22, 359
Kzo9I	GATC	4 cut(s)	15, 29, 223, 271
LpnPI	CCDG	3 cut(s)	46, 489, 558
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	288, 405, 554
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	50, 524, 611
MalI	GATC	4 cut(s)	17, 31, 225, 273
MboI	GATC	4 cut(s)	15, 29, 223, 271
MboII	GAAGA	7 cut(s)	166, 359, 407, 410, 440, 474, 593
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	83, 439, 480, 563
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	394, 553, 561
MseI	TTAA	3 cut(s)	135, 438, 622
NdeII	GATC	4 cut(s)	15, 29, 223, 271
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	22, 359
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	3 cut(s)	50, 524, 611
PaeR7I	CTCGAG	1 cut(s)	591
PagI	TCATGA	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	310, 350
Pfl23II	CGTACG	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	217
PsiI	TTATAA	1 cut(s)	546
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	98, 215
RsaNI	GTAC	2 cut(s)	97, 214
SaqAI	TTAA	3 cut(s)	135, 438, 622
Sau3AI	GATC	4 cut(s)	15, 29, 223, 271
SetI	ASST	5 cut(s)	127, 219, 267, 286, 478
SfaNI	GCATC	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	591
SlaI	CTCGAG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	338, 591
SmoI	CTYRAG	2 cut(s)	338, 591
SnaBI	TACGTA	1 cut(s)	217
Sse9I	AATT	4 cut(s)	83, 439, 480, 563
SspMI	CTAG	3 cut(s)	288, 405, 554
TaaI	ACNGT	1 cut(s)	611
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	313, 471, 540, 592
TasI	AATT	4 cut(s)	83, 439, 480, 563
TfiI	GAWTC	2 cut(s)	310, 350
Tru1I	TTAA	3 cut(s)	135, 438, 622
Tru9I	TTAA	3 cut(s)	135, 438, 622
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	3 cut(s)	50, 524, 611
Tsp45I	GTSAC	3 cut(s)	50, 524, 611
TspDTI	ATGAA	2 cut(s)	360, 594
TspGWI	ACGGA	2 cut(s)	84, 216
TspRI	CASTG	1 cut(s)	616
XbaI	TCTAGA	1 cut(s)	553
XhoI	CTCGAG	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	3 cut(s)	288, 405, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.