FvH4_5g23171

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
14512270 .. 14512713
444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23171.t1

Sequence Viewer

Length: 444 bp
ATGCATTTAGCTGATGTTGGTATGTTAGAGACTTATGAAATATGGCATAGACATGGTGAAAAAGTTGGAGCTCCACCTCCTCCTATCGTTCAAGATGAACCTGAACCCGATGATTTCGTTCATAATATGTTGAATGATATATTCCCAATTTTTGAGGAGGCTGAGGATGATGATATGAGCATGGGGGATGACACAAGTGAGATGGGAGATGCTATGAGAAATCAGGGTGCCAACGTACATAGGCTACAAGCTAATACATATGAGGATTTGCTTGCTGAAGCAAATCGGGAGTTTTTCTGTGGTTGTGATCAACATAGTGCTTTGACAGCGATGATCAAACTGATGCATTGCAAAGTCGACAATCATTGGTCAAATAAGTCTTTTACTACATTGATGGAGACATTGTATGCGTTTTGTCCTAAGCTTAACAACATTCCCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

148

Amino Acids

16.81

Weight (kDa)

4.54

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 2 cut(s) 92, 133
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 4 cut(s) 11, 71, 251, 424
AluI AGCT 4 cut(s) 11, 71, 251, 424
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 23, 392
AsuHPI GGTGA 1 cut(s) 68
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 196, 388
BciT130I CCWGG 1 cut(s) 439
BclI TGATCA 2 cut(s) 307, 333
BcoDI GTCTC 2 cut(s) 23, 392
Bme1390I CCNGG 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 199, 333
Bpu10I CCTNAGC 2 cut(s) 162, 420
BsaJI CCNNGG 1 cut(s) 437
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 2 cut(s) 172, 193
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 2 cut(s) 69, 170
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 23, 392
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 307, 333
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 2 cut(s) 307, 333
Bst2UI CCWGG 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 162, 420
BstF5I GGATG 2 cut(s) 172, 193
BstKTI GATC 2 cut(s) 310, 336
BstMAI GTCTC 2 cut(s) 23, 392
BstMBI GATC 2 cut(s) 307, 333
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 172, 193
Cac8I GCNNGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 236
CviAII CATG 2 cut(s) 53, 181
CviJI RGCY 6 cut(s) 11, 71, 161, 244, 251, 424
CviKI_1 RGCY 6 cut(s) 11, 71, 161, 244, 251, 424
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 162, 420
DpnI GATC 2 cut(s) 309, 335
DpnII GATC 2 cut(s) 307, 333
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 437
EcoT22I ATGCAT 2 cut(s) 6, 348
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 2 cut(s) 56, 184
FatI CATG 2 cut(s) 52, 180
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 2 cut(s) 307, 333
FblI GTMKAC 1 cut(s) 357
FokI GGATG 2 cut(s) 179, 200
FriOI GRGCYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 56, 184
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 422
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 92, 287
Hpy8I GTNNAC 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 4, 346, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 2 cut(s) 162, 420
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 2 cut(s) 56, 184
Ksp22I TGATCA 2 cut(s) 307, 333
Kzo9I GATC 2 cut(s) 307, 333
LmnI GCTCC 2 cut(s) 68, 76
LpnPI CCDG 3 cut(s) 114, 209, 424
LweI GCATC 2 cut(s) 199, 333
MaeII ACGT 1 cut(s) 234
MalI GATC 2 cut(s) 309, 335
MboI GATC 2 cut(s) 307, 333
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 87, 90, 148, 151, 157, 256
Mph1103I ATGCAT 2 cut(s) 6, 348
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 439
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 307, 333
NlaIII CATG 2 cut(s) 56, 184
NlaIV GGNNCC 1 cut(s) 229
NsiI ATGCAT 2 cut(s) 6, 348
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 229
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 73
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 2 cut(s) 307, 333
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 73
SetI ASST 8 cut(s) 13, 73, 79, 103, 237, 253, 426, 443
SfaNI GCATC 2 cut(s) 199, 333
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 1 cut(s) 147
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 437
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 357
TasI AATT 1 cut(s) 147
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TspDTI ATGAA 3 cut(s) 51, 110, 111
XmiI GTMKAC 1 cut(s) 357
Zsp2I ATGCAT 2 cut(s) 6, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.