Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007253.1

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Reverse (-)

2583 .. 5434

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007253.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgtcatctggaagggactgccaaccaggtgacgcatcggatagtactgccaaccgggctgtagtctggaagggactgccaaccagactattacctagaagggacagccaactagaggatagtgttggtacctacacgatttgtaatgcaaatggtgttcgatggcatgtcaaacagctcgagcaaaccagaacaatgcagaatagtgggatcatggttccaggatcacataataacagtgaaagtgacttttatgggcagttggttagcgtcgtcaaattagactttccatacgactattcagtttttctatttaaaggtgagtggtttaatacaataaatacaaagaagagaagaagaaccattcgtgattaccatttgacatcgttgaatgtaaacaataaatggtacgtaaaagatccgtatatacttgcaaagcaagcacaacaagtgttttaccttgatgatccgaagttaggtgctggttggaaagtcattcaaaagattcgacacagacatatatgggatgtgcctgagaatgaagaatctcatgatatcgaaacaagttatgttgatggggtagaccaagaagaagaggctagcaatatcactcatcccattgaagagaatgttaattcaatgccaacactttgtagaagagatgtcgaacctgaaattgttggtttaagtagcaaagatattgaacaaagcaacataagtgacgatgattttatcgatgataatcctgtagatgaagaattactatcaggagatgaagataacactcgagaaagtgatggatacagtgacttggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

272

Amino Acids

31.18

Weight (kDa)

4.68

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	582
AclWI	GGATC	4 cut(s)	218, 232, 413, 461
AfaI	GTAC	3 cut(s)	46, 130, 410
AfiI	CCNNNNNNNGG	2 cut(s)	115, 476
AgsI	TTSAA	5 cut(s)	391, 500, 623, 639, 704
AjnI	CCWGG	2 cut(s)	25, 220
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AlwI	GGATC	4 cut(s)	218, 232, 413, 461
Ama87I	CYCGRG	2 cut(s)	179, 786
Asp718I	GGTACC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	41, 332
AsuNHI	GCTAGC	1 cut(s)	599
AvaI	CYCGRG	2 cut(s)	179, 786
BanI	GGYRCC	1 cut(s)	128
BccI	CCATC	3 cut(s)	156, 569, 791
BciT130I	CCWGG	2 cut(s)	27, 222
BciVI	GTATCC	1 cut(s)	794
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	3 cut(s)	96, 113, 600
BfmI	CTRYAG	2 cut(s)	60, 747
BfuI	GTATCC	1 cut(s)	794
BglI	GCCNNNNNGGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	3 cut(s)	27, 56, 222
BmeT110I	CYCGRG	2 cut(s)	179, 786
BmiI	GGNNCC	2 cut(s)	130, 219
BmrFI	CCNGG	3 cut(s)	27, 56, 222
BmsI	GCATC	1 cut(s)	44
BmtI	GCTAGC	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	735
BsaAI	YACGTR	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 476
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	27, 222
BseCI	ATCGAT	1 cut(s)	735
BseGI	GGATG	2 cut(s)	532, 613
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	2 cut(s)	115, 476
BseMII	CTCAG	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	735
BsiHKCI	CYCGRG	2 cut(s)	179, 786
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	3 cut(s)	29, 87, 116
BslI	CCNNNNNNNGG	2 cut(s)	115, 476
BsmFI	GGGAC	3 cut(s)	29, 87, 116
BsoBI	CYCGRG	2 cut(s)	179, 786
Bsp143I	GATC	4 cut(s)	210, 224, 418, 466
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	735
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	130, 219
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	4 cut(s)	218, 232, 413, 461
BspT107I	GGYRCC	1 cut(s)	128
BssMI	GATC	4 cut(s)	210, 224, 418, 466
Bst2UI	CCWGG	2 cut(s)	27, 222
Bst4CI	ACNGT	2 cut(s)	239, 806
Bst6I	CTCTTC	4 cut(s)	344, 588, 618, 652
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	441, 601
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	532, 613
BstKTI	GATC	4 cut(s)	213, 227, 421, 469
BstMBI	GATC	4 cut(s)	210, 224, 418, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 440
BstNI	CCWGG	2 cut(s)	27, 222
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	25, 54, 220
BstSFI	CTRYAG	2 cut(s)	60, 747
BstSNI	TACGTA	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	794
BsuTUI	ATCGAT	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	532, 613
BtsIMutI	CAGTG	2 cut(s)	244, 811
Cac8I	GCNNGC	2 cut(s)	441, 601
CciI	TCATGA	1 cut(s)	550
ClaI	ATCGAT	1 cut(s)	735
CseI	GACGC	2 cut(s)	41, 259
CsiI	ACCWGGT	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	45, 129, 409
CviAII	CATG	3 cut(s)	167, 214, 551
CviJI	RGCY	4 cut(s)	59, 108, 178, 599
CviKI_1	RGCY	4 cut(s)	59, 108, 178, 599
CviQI	GTAC	3 cut(s)	45, 129, 409
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	4 cut(s)	212, 226, 420, 468
DpnII	GATC	4 cut(s)	210, 224, 418, 466
DraI	TTTAAA	1 cut(s)	316
Eam1104I	CTCTTC	4 cut(s)	344, 588, 618, 652
EarI	CTCTTC	4 cut(s)	344, 588, 618, 652
Eco105I	TACGTA	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	556
Eco88I	CYCGRG	2 cut(s)	179, 786
EcoRII	CCWGG	2 cut(s)	25, 220
EcoRV	GATATC	1 cut(s)	556
FaeI	CATG	3 cut(s)	170, 217, 554
FaqI	GGGAC	3 cut(s)	29, 87, 116
FatI	CATG	3 cut(s)	166, 213, 550
FblI	GTMKAC	1 cut(s)	582
FokI	GGATG	2 cut(s)	539, 600
FspBI	CTAG	3 cut(s)	96, 113, 600
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	2 cut(s)	41, 259
Hin1II	CATG	3 cut(s)	170, 217, 554
HinfI	GANTC	2 cut(s)	505, 545
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	41, 332
Hpy166II	GTNNAC	2 cut(s)	397, 583
Hpy188I	TCNGA	2 cut(s)	40, 471
Hpy188III	TCNNGA	6 cut(s)	9, 67, 368, 551, 768, 788
Hpy8I	GTNNAC	2 cut(s)	397, 583
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	6, 64, 93
HpyCH4III	ACNGT	2 cut(s)	239, 806
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	3 cut(s)	149, 199, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 440
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	170, 217, 554
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	210, 224, 418, 466
LweI	GCATC	1 cut(s)	44
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	3 cut(s)	96, 113, 600
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	4 cut(s)	29, 245, 719, 806
MalI	GATC	4 cut(s)	212, 226, 420, 468
MboI	GATC	4 cut(s)	210, 224, 418, 466
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	4 cut(s)	278, 634, 675, 758
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	2 cut(s)	109, 589
MseI	TTAA	5 cut(s)	315, 330, 633, 686, 817
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	3 cut(s)	27, 56, 222
MvaI	CCWGG	2 cut(s)	27, 222
MwoI	GCNNNNNNNGC	2 cut(s)	56, 440
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	210, 224, 418, 466
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	3 cut(s)	170, 217, 554
NlaIV	GGNNCC	2 cut(s)	130, 219
NmuCI	GTSAC	4 cut(s)	29, 245, 719, 806
NspI	RCATGY	1 cut(s)	170
PaeR7I	CTCGAG	2 cut(s)	179, 786
PagI	TCATGA	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	505, 545
PfoI	TCCNGGA	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	25, 220
PspGI	CCWGG	2 cut(s)	25, 220
PspN4I	GGNNCC	2 cut(s)	130, 219
PspXI	VCTCGAGB	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	3 cut(s)	46, 130, 410
RsaNI	GTAC	3 cut(s)	45, 129, 409
SaqAI	TTAA	5 cut(s)	315, 330, 633, 686, 817
Sau3AI	GATC	4 cut(s)	210, 224, 418, 466
ScaI	AGTACT	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	27, 56, 222
SetI	ASST	9 cut(s)	31, 97, 134, 180, 322, 414, 462, 481, 673
SexAI	ACCWGGT	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	2 cut(s)	60, 747
Sfr274I	CTCGAG	2 cut(s)	179, 786
SlaI	CTCGAG	2 cut(s)	179, 786
SmlI	CTYRAG	2 cut(s)	179, 786
SmoI	CTYRAG	2 cut(s)	179, 786
SnaBI	TACGTA	1 cut(s)	412
Sse9I	AATT	4 cut(s)	278, 634, 675, 758
SspMI	CTAG	3 cut(s)	96, 113, 600
StyD4I	CCNGG	3 cut(s)	25, 54, 220
TaaI	ACNGT	2 cut(s)	239, 806
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	7 cut(s)	160, 180, 508, 558, 666, 735, 787
TasI	AATT	4 cut(s)	278, 634, 675, 758
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	505, 545
Tru1I	TTAA	5 cut(s)	315, 330, 633, 686, 817
Tru9I	TTAA	5 cut(s)	315, 330, 633, 686, 817
TscAI	CASTG	2 cut(s)	244, 811
TseFI	GTSAC	4 cut(s)	29, 245, 719, 806
Tsp45I	GTSAC	4 cut(s)	29, 245, 719, 806
TspDTI	ATGAA	3 cut(s)	555, 768, 789
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	244, 811
XceI	RCATGY	1 cut(s)	170
XhoI	CTCGAG	2 cut(s)	179, 786
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	3 cut(s)	96, 113, 600
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.