TdcA1-ORF2 protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 532 |
| Acc65I | GGTACC | 1 cut(s) | 746 |
| AccB1I | GGYRCC | 1 cut(s) | 746 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 482 |
| AccI | GTMKAC | 1 cut(s) | 1200 |
| AclI | AACGTT | 1 cut(s) | 446 |
| AclWI | GGATC | 4 cut(s) | 694, 836, 1031, 1079 |
| AcsI | RAATTY | 2 cut(s) | 342, 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 482 |
| AfaI | GTAC | 6 cut(s) | 8, 471, 488, 748, 911, 1028 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 482, 1094 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 4 cut(s) | 55, 73, 616, 796 |
| AluI | AGCT | 4 cut(s) | 55, 73, 616, 796 |
| Alw21I | GWGCWC | 1 cut(s) | 106 |
| Alw26I | GTCTC | 2 cut(s) | 386, 619 |
| AlwI | GGATC | 4 cut(s) | 694, 836, 1031, 1079 |
| Ama87I | CYCGRG | 1 cut(s) | 1404 |
| ApoI | RAATTY | 2 cut(s) | 342, 588 |
| Asp718I | GGTACC | 1 cut(s) | 746 |
| AspS9I | GGNCC | 1 cut(s) | 728 |
| AsuHPI | GGTGA | 2 cut(s) | 443, 950 |
| AsuNHI | GCTAGC | 1 cut(s) | 1217 |
| AvaI | CYCGRG | 1 cut(s) | 1404 |
| AvaII | GGWCC | 1 cut(s) | 728 |
| BanI | GGYRCC | 1 cut(s) | 746 |
| BauI | CACGAG | 2 cut(s) | 99, 797 |
| Bbv12I | GWGCWC | 1 cut(s) | 106 |
| BccI | CCATC | 4 cut(s) | 136, 419, 1187, 1409 |
| BceAI | ACGGC | 1 cut(s) | 928 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 432, 466 |
| BciVI | GTATCC | 1 cut(s) | 1412 |
| BcoDI | GTCTC | 2 cut(s) | 386, 619 |
| BfaI | CTAG | 3 cut(s) | 617, 1218, 1367 |
| BfuAI | ACCTGC | 1 cut(s) | 532 |
| BfuI | GTATCC | 1 cut(s) | 1412 |
| Bme18I | GGWCC | 1 cut(s) | 728 |
| BmeT110I | CYCGRG | 1 cut(s) | 1404 |
| BmgT120I | GGNCC | 1 cut(s) | 728 |
| BmiI | GGNNCC | 3 cut(s) | 522, 748, 837 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BmtI | GCTAGC | 1 cut(s) | 1221 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| Bpu10I | CCTNAGC | 1 cut(s) | 304 |
| BpuEI | CTTGAG | 1 cut(s) | 110 |
| BsaAI | YACGTR | 1 cut(s) | 1030 |
| BsaJI | CCNNGG | 1 cut(s) | 682 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 482, 1094 |
| Bse1I | ACTGG | 1 cut(s) | 608 |
| BseDI | CCNNGG | 1 cut(s) | 682 |
| BseGI | GGATG | 3 cut(s) | 313, 1150, 1231 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 482, 1094 |
| BseMII | CTCAG | 1 cut(s) | 1143 |
| BseNI | ACTGG | 1 cut(s) | 608 |
| BshNI | GGYRCC | 1 cut(s) | 746 |
| BsiHKAI | GWGCWC | 1 cut(s) | 106 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1404 |
| BsiWI | CGTACG | 1 cut(s) | 909 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 482, 1094 |
| BsmAI | GTCTC | 2 cut(s) | 386, 619 |
| BsmBI | CGTCTC | 1 cut(s) | 386 |
| BsoBI | CYCGRG | 1 cut(s) | 1404 |
| Bsp1286I | GDGCHC | 1 cut(s) | 106 |
| Bsp143I | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| BspCNI | CTCAG | 1 cut(s) | 1144 |
| BspHI | TCATGA | 1 cut(s) | 1168 |
| BspLI | GGNNCC | 3 cut(s) | 522, 748, 837 |
| BspMI | ACCTGC | 1 cut(s) | 532 |
| BspOI | GCTAGC | 1 cut(s) | 1221 |
| BspPI | GGATC | 4 cut(s) | 694, 836, 1031, 1079 |
| BspT107I | GGYRCC | 1 cut(s) | 746 |
| BsrI | ACTGG | 1 cut(s) | 608 |
| BssECI | CCNNGG | 1 cut(s) | 682 |
| BssMI | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| BssSI | CACGAG | 2 cut(s) | 99, 797 |
| BssT1I | CCWWGG | 1 cut(s) | 682 |
| Bst2BI | CACGAG | 2 cut(s) | 99, 797 |
| Bst4CI | ACNGT | 3 cut(s) | 397, 857, 1424 |
| Bst6I | CTCTTC | 6 cut(s) | 507, 615, 962, 1206, 1236, 1270 |
| BstBAI | YACGTR | 1 cut(s) | 1030 |
| BstC8I | GCNNGC | 3 cut(s) | 53, 1059, 1219 |
| BstDEI | CTNAG | 2 cut(s) | 541, 1152 |
| BstF5I | GGATG | 3 cut(s) | 313, 1150, 1231 |
| BstKTI | GATC | 7 cut(s) | 19, 637, 689, 831, 845, 1039, 1087 |
| BstMAI | GTCTC | 2 cut(s) | 386, 619 |
| BstMBI | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1058 |
| BstNSI | RCATGY | 1 cut(s) | 788 |
| BstSNI | TACGTA | 1 cut(s) | 1030 |
| BstX2I | RGATCY | 1 cut(s) | 1036 |
| BstYI | RGATCY | 1 cut(s) | 1036 |
| BsuI | GTATCC | 1 cut(s) | 1412 |
| BtsCI | GGATG | 3 cut(s) | 313, 1150, 1231 |
| BtsIMutI | CAGTG | 2 cut(s) | 862, 1429 |
| BveI | ACCTGC | 1 cut(s) | 532 |
| Cac8I | GCNNGC | 3 cut(s) | 53, 1059, 1219 |
| CciI | TCATGA | 1 cut(s) | 1168 |
| Cfr13I | GGNCC | 1 cut(s) | 728 |
| CseI | GACGC | 1 cut(s) | 877 |
| Csp6I | GTAC | 6 cut(s) | 7, 470, 487, 747, 910, 1027 |
| CviAII | CATG | 7 cut(s) | 77, 235, 264, 648, 785, 832, 1169 |
| CviJI | RGCY | 8 cut(s) | 55, 73, 255, 338, 616, 796, 915, 1217 |
| CviKI_1 | RGCY | 8 cut(s) | 55, 73, 255, 338, 616, 796, 915, 1217 |
| CviQI | GTAC | 6 cut(s) | 7, 470, 487, 747, 910, 1027 |
| DdeI | CTNAG | 2 cut(s) | 541, 1152 |
| DpnI | GATC | 7 cut(s) | 18, 636, 688, 830, 844, 1038, 1086 |
| DpnII | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| DraI | TTTAAA | 1 cut(s) | 571 |
| DraIII | CACNNNGTG | 1 cut(s) | 482 |
| Eam1104I | CTCTTC | 6 cut(s) | 507, 615, 962, 1206, 1236, 1270 |
| EarI | CTCTTC | 6 cut(s) | 507, 615, 962, 1206, 1236, 1270 |
| Eco105I | TACGTA | 1 cut(s) | 1030 |
| Eco130I | CCWWGG | 1 cut(s) | 682 |
| Eco32I | GATATC | 1 cut(s) | 1174 |
| Eco47I | GGWCC | 1 cut(s) | 728 |
| Eco88I | CYCGRG | 1 cut(s) | 1404 |
| EcoRV | GATATC | 1 cut(s) | 1174 |
| EcoT14I | CCWWGG | 1 cut(s) | 682 |
| EcoT22I | ATGCAT | 2 cut(s) | 240, 718 |
| ErhI | CCWWGG | 1 cut(s) | 682 |
| Esp3I | CGTCTC | 1 cut(s) | 386 |
| FaeI | CATG | 7 cut(s) | 80, 238, 267, 651, 788, 835, 1172 |
| FatI | CATG | 7 cut(s) | 76, 234, 263, 647, 784, 831, 1168 |
| FauNDI | CATATG | 1 cut(s) | 21 |
| FblI | GTMKAC | 1 cut(s) | 1200 |
| FokI | GGATG | 3 cut(s) | 320, 1157, 1218 |
| FspBI | CTAG | 3 cut(s) | 617, 1218, 1367 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| HgaI | GACGC | 1 cut(s) | 877 |
| Hin1II | CATG | 7 cut(s) | 80, 238, 267, 651, 788, 835, 1172 |
| HincII | GTYRAC | 1 cut(s) | 271 |
| HindII | GTYRAC | 1 cut(s) | 271 |
| HindIII | AAGCTT | 1 cut(s) | 53 |
| HinfI | GANTC | 5 cut(s) | 353, 604, 658, 1123, 1163 |
| HpaI | GTTAAC | 1 cut(s) | 271 |
| HphI | GGTGA | 2 cut(s) | 443, 950 |
| Hpy166II | GTNNAC | 4 cut(s) | 177, 271, 1015, 1201 |
| Hpy188I | TCNGA | 3 cut(s) | 195, 508, 1089 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 655, 731, 986, 1169, 1367, 1386, 1406 |
| Hpy8I | GTNNAC | 4 cut(s) | 177, 271, 1015, 1201 |
| Hpy99I | CGWCG | 1 cut(s) | 893 |
| HpyAV | CCTTC | 5 cut(s) | 119, 190, 313, 511, 654 |
| HpyCH4III | ACNGT | 3 cut(s) | 397, 857, 1424 |
| HpyCH4IV | ACGT | 2 cut(s) | 446, 1029 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1058 |
| HpyF3I | CTNAG | 2 cut(s) | 541, 1152 |
| HpySE526I | ACGT | 2 cut(s) | 446, 1029 |
| Hsp92II | CATG | 7 cut(s) | 80, 238, 267, 651, 788, 835, 1172 |
| KpnI | GGTACC | 1 cut(s) | 750 |
| KspAI | GTTAAC | 1 cut(s) | 271 |
| Kzo9I | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| LmnI | GCTCC | 1 cut(s) | 78 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeI | CTAG | 3 cut(s) | 617, 1218, 1367 |
| MaeII | ACGT | 2 cut(s) | 446, 1029 |
| MaeIII | GTNAC | 5 cut(s) | 354, 697, 863, 1337, 1424 |
| MalI | GATC | 7 cut(s) | 18, 636, 688, 830, 844, 1038, 1086 |
| MboI | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| MfeI | CAATTG | 2 cut(s) | 213, 547 |
| MflI | RGATCY | 1 cut(s) | 1036 |
| MhlI | GDGCHC | 1 cut(s) | 106 |
| MlyI | GAGTC | 3 cut(s) | 362, 613, 652 |
| MmeI | TCCRAC | 2 cut(s) | 285, 1085 |
| MnlI | CCTC | 6 cut(s) | 123, 178, 727, 1207, 1366, 1374 |
| Mph1103I | ATGCAT | 2 cut(s) | 240, 718 |
| MseI | TTAA | 6 cut(s) | 69, 270, 570, 948, 1251, 1435 |
| MunI | CAATTG | 2 cut(s) | 213, 547 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1058 |
| NdeI | CATATG | 1 cut(s) | 21 |
| NdeII | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| NheI | GCTAGC | 1 cut(s) | 1217 |
| NlaIII | CATG | 7 cut(s) | 80, 238, 267, 651, 788, 835, 1172 |
| NlaIV | GGNNCC | 3 cut(s) | 522, 748, 837 |
| NmuCI | GTSAC | 5 cut(s) | 354, 697, 863, 1337, 1424 |
| NsiI | ATGCAT | 2 cut(s) | 240, 718 |
| NspI | RCATGY | 1 cut(s) | 788 |
| PaeR7I | CTCGAG | 1 cut(s) | 1404 |
| PagI | TCATGA | 1 cut(s) | 1168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 412 |
| PfeI | GAWTC | 2 cut(s) | 1123, 1163 |
| Pfl23II | CGTACG | 1 cut(s) | 909 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 482 |
| PleI | GAGTC | 3 cut(s) | 361, 612, 652 |
| PpsI | GAGTC | 3 cut(s) | 361, 612, 652 |
| Ppu21I | YACGTR | 1 cut(s) | 1030 |
| Psp1406I | AACGTT | 1 cut(s) | 446 |
| PspLI | CGTACG | 1 cut(s) | 909 |
| PspN4I | GGNNCC | 3 cut(s) | 522, 748, 837 |
| PspPI | GGNCC | 1 cut(s) | 728 |
| PsuI | RGATCY | 1 cut(s) | 1036 |
| RsaI | GTAC | 6 cut(s) | 8, 471, 488, 748, 911, 1028 |
| RsaNI | GTAC | 6 cut(s) | 7, 470, 487, 747, 910, 1027 |
| SaqAI | TTAA | 6 cut(s) | 69, 270, 570, 948, 1251, 1435 |
| Sau3AI | GATC | 7 cut(s) | 16, 634, 686, 828, 842, 1036, 1084 |
| Sau96I | GGNCC | 1 cut(s) | 728 |
| SchI | GAGTC | 3 cut(s) | 362, 613, 652 |
| SduI | GDGCHC | 1 cut(s) | 106 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| Sfr274I | CTCGAG | 1 cut(s) | 1404 |
| SinI | GGWCC | 1 cut(s) | 728 |
| SlaI | CTCGAG | 1 cut(s) | 1404 |
| SmlI | CTYRAG | 2 cut(s) | 89, 1404 |
| SmoI | CTYRAG | 2 cut(s) | 89, 1404 |
| SnaBI | TACGTA | 1 cut(s) | 1030 |
| SspMI | CTAG | 3 cut(s) | 617, 1218, 1367 |
| StyI | CCWWGG | 1 cut(s) | 682 |
| TaaI | ACNGT | 3 cut(s) | 397, 857, 1424 |
| TaiI | ACGT | 2 cut(s) | 449, 1032 |
| TaqI | TCGA | 5 cut(s) | 406, 1126, 1176, 1284, 1405 |
| TatI | WGTACW | 1 cut(s) | 6 |
| TfiI | GAWTC | 2 cut(s) | 1123, 1163 |
| Tru1I | TTAA | 6 cut(s) | 69, 270, 570, 948, 1251, 1435 |
| Tru9I | TTAA | 6 cut(s) | 69, 270, 570, 948, 1251, 1435 |
| TscAI | CASTG | 2 cut(s) | 862, 1429 |
| TseFI | GTSAC | 5 cut(s) | 354, 697, 863, 1337, 1424 |
| Tsp45I | GTSAC | 5 cut(s) | 354, 697, 863, 1337, 1424 |
| TspDTI | ATGAA | 9 cut(s) | 17, 291, 324, 525, 570, 600, 636, 1173, 1407 |
| TspGWI | ACGGA | 3 cut(s) | 197, 897, 1029 |
| TspRI | CASTG | 2 cut(s) | 862, 1429 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 1 cut(s) | 728 |
| XapI | RAATTY | 2 cut(s) | 342, 588 |
| XbaI | TCTAGA | 1 cut(s) | 1366 |
| XceI | RCATGY | 1 cut(s) | 788 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 123 |
| XhoI | CTCGAG | 1 cut(s) | 1404 |
| XmiI | GTMKAC | 1 cut(s) | 1200 |
| XspI | CTAG | 3 cut(s) | 617, 1218, 1367 |
| Zsp2I | ATGCAT | 2 cut(s) | 240, 718 |