Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Forward (+)

1388192 .. 1388548

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCCAACACTTTGTAGAAGAGATGTCGAACCTGAAATTGTTGGTTTGAGTAGCAAAGATATTGAACAAAGCAACATAAGTGATGATGATTTTATCGATGATAATCCCCTACAAGAGGAATTACTATCAGGAGATGAAGATAACACTCGAGAAAGTGATGGATACAGTGACTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

59

Amino Acids

6.65

Weight (kDa)

4.05

Isoelectric Point (pI)

78.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	147
BccI	CCATC	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	113
FaiI	YATR	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	129, 149
HpyCH4III	ACNGT	1 cut(s)	167
LpnPI	CCDG	2 cut(s)	45, 114
MaeIII	GTNAC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	30, 149
MluCI	AATT	2 cut(s)	36, 119
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	178
SetI	ASST	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	147
SgeI	CNNG	5 cut(s)	44, 125, 141, 159, 161
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	36, 119
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	27, 96, 148
TasI	AATT	2 cut(s)	36, 119
Tru1I	TTAA	1 cut(s)	178
Tru9I	TTAA	1 cut(s)	178
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.