Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Forward (+)

2871291 .. 2877405

Gene Structure 6115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGATTCGGTACGTCTAATTTGACACTGGGGCCGTCGGATTTGAATATTGTTGGGCTTGGTCAAGATACAGAGGAAGATCCTAGATTGAAGGTTTTCACGAAGGAGTGGTTTCAAATCAAGCACTGTCTCGATATTGGCTGCAATGCTGGGATCATGACTATTGAAATCGACCAGACCATACCTGTTATCCGGATGCATTTAGCTGCTGTTGGTATGTTAGAGACTGATGAAATATGGCATAGACATGGTGAAAAAGTTGGAGCTCCACCTCCTCCTATTGTTCAAGATGAACCTGAACCCGATTATTTCGTTCATAATATGTTGAATGATATATTCCCAATTTTTGAAGAGGCTGAGGATGATGATATGAGCATGGGGGATGATACAAGTGAGATGGGAGATGCTATGGAAAATCAGGGTGCTAATGTACATAGGCTACAAGCTGATACATATGAGGATTTGCGTGCTGAAGCAAATCGGGAGTTTTCAACTGAACCTGAAATCCATGTGCTTAGTGACAAGGACTTAGAACAGAGTAGTTCTCATGATGTCGATTTCATTGATGATGATCCTGAAGATGAAGAAATGTTGTCCGCAGATGAGGAAAACGCTGAGAATAACGAGGATGATTATGATAGATATAAGATTGCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

220

Amino Acids

24.89

Weight (kDa)

4.05

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	3 cut(s)	74, 161, 566
AcuI	CTGAAG	2 cut(s)	492, 597
AfaI	GTAC	2 cut(s)	13, 432
AgsI	TTSAA	8 cut(s)	46, 91, 116, 167, 287, 328, 350, 492
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	3 cut(s)	206, 266, 446
AluI	AGCT	3 cut(s)	206, 266, 446
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	134, 218
AlwI	GGATC	3 cut(s)	74, 161, 566
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	141, 206
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	128, 193
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	134, 218
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	142, 207
BlsI	GCNGC	2 cut(s)	143, 208
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	186, 394
BmuI	ACTGGG	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
Bpu10I	CCTNAGC	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	192
BseGI	GGATG	4 cut(s)	201, 367, 388, 634
BseJI	GATNNNNATC	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	348, 606
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	128, 193
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	134, 218
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	79, 153, 571
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	349, 607
BspEI	TCCGGA	1 cut(s)	192
BspHI	TCATGA	2 cut(s)	156, 547
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	3 cut(s)	74, 161, 566
BsrDI	GCAATG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	79, 153, 571
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	357, 515, 529, 615
BstF5I	GGATG	4 cut(s)	201, 367, 388, 634
BstKTI	GATC	3 cut(s)	82, 156, 574
BstMAI	GTCTC	2 cut(s)	134, 218
BstMBI	GATC	3 cut(s)	79, 153, 571
BstV1I	GCAGC	2 cut(s)	128, 193
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	201, 367, 388, 634
BtsIMutI	CAGTG	2 cut(s)	26, 124
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	2 cut(s)	156, 547
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	12, 431
CviAII	CATG	5 cut(s)	157, 248, 376, 509, 548
CviJI	RGCY	8 cut(s)	34, 58, 141, 206, 266, 356, 439, 446
CviKI_1	RGCY	8 cut(s)	34, 58, 141, 206, 266, 356, 439, 446
CviQI	GTAC	2 cut(s)	12, 431
DdeI	CTNAG	4 cut(s)	357, 515, 529, 615
DpnI	GATC	3 cut(s)	81, 155, 573
DpnII	GATC	3 cut(s)	79, 153, 571
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	492, 597
EcoICRI	GAGCTC	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	5 cut(s)	160, 251, 379, 512, 551
FatI	CATG	5 cut(s)	156, 247, 375, 508, 547
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	142, 207
FokI	GGATG	4 cut(s)	208, 374, 395, 641
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	2 cut(s)	142, 207
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	142, 207
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	5 cut(s)	160, 251, 379, 512, 551
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	9 cut(s)	65, 100, 131, 157, 193, 287, 482, 548, 575
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	85, 97
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	144, 199
HpyF3I	CTNAG	4 cut(s)	357, 515, 529, 615
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	160, 251, 379, 512, 551
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	79, 153, 571
LmnI	GCTCC	2 cut(s)	263, 271
LpnPI	CCDG	9 cut(s)	14, 135, 188, 198, 206, 309, 404, 513, 588
Lsp1109I	GCAGC	2 cut(s)	128, 193
LweI	GCATC	2 cut(s)	186, 394
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	3 cut(s)	81, 155, 573
MboI	GATC	3 cut(s)	79, 153, 571
MboII	GAAGA	4 cut(s)	89, 362, 590, 596
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	19, 342
MmeI	TCCRAC	2 cut(s)	18, 241
MnlI	CCTC	8 cut(s)	67, 282, 285, 346, 352, 451, 598, 619
Mph1103I	ATGCAT	1 cut(s)	201
MroI	TCCGGA	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	193
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	3 cut(s)	79, 153, 571
NlaIII	CATG	5 cut(s)	160, 251, 379, 512, 551
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	201
PagI	TCATGA	2 cut(s)	156, 547
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	143, 208
Psp124BI	GAGCTC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	2 cut(s)	13, 432
RsaNI	GTAC	2 cut(s)	12, 431
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	268
SatI	GCNGC	2 cut(s)	142, 207
Sau3AI	GATC	3 cut(s)	79, 153, 571
Sau96I	GGNCC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	9 cut(s)	17, 96, 187, 208, 268, 274, 298, 448, 502
SfaNI	GCATC	2 cut(s)	186, 394
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	19, 342
SsiI	CCGC	1 cut(s)	597
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	132, 171, 555
TasI	AATT	2 cut(s)	19, 342
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	6
TscAI	CASTG	2 cut(s)	33, 131
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	2 cut(s)	141, 206
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	5 cut(s)	246, 305, 306, 550, 597
TspRI	CASTG	2 cut(s)	33, 131
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.