Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Forward (+)

51616330 .. 51617409

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTACATGGCCGTAAAACAGTCCAGTGGTCAAAAGAAGACAAGGATTCAGCTTATTGGTACATATTGAATAATTGTGATGAAGTTGAACCCTTTAAAGCTGAGCATACAAAAATATTGAAGAGAGAGAGTCATTTGGATTTAGAAGATAGACAAAGAAATTCTTTTCCTACATGGTTTAAGGCTCGTGTTAATGCATTGCATAAGAGAGGATCAAGTGAAGTGAACGATGAGTTGTATGCATTGTCATTTGGTCCTGTTGATACTGTTAGTACATTCACAGGTTGTATCGTGAATGGGATCCGTTGGCATGTCAAACAAGTAGAAGAGACTAAATCTGTCCAAAACAGCGGGATTATGGTGCCAGGTTTACATGGTGACAAGGCAAGTGACTTTTACGGTTCTTTGGTCAGCATTGTTAAACTAAACTTTATATGTGGCTATTCAGTTCTTCTTTTCAAAGGTCAGTGGTACGATACAAGTCCTTCTAAGAAGAGAAAGAGACAAGGGATTATTCGTGATTACCATCTCATGTCTTTGAACACCGACATTCAATGGTATAGTGAGGATCCTTATGTCTTAGCAAAGACAAGCAAAACAGATTTTTTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218

Protein Analysis

204

Amino Acids

23.58

Weight (kDa)

8.64

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4216	PF13952	142 - 199	1.3e-06	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	5 cut(s)	220, 295, 308, 563, 576
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	3 cut(s)	62, 274, 473
AgsI	TTSAA	6 cut(s)	70, 89, 121, 460, 541, 554
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	53, 101
AluI	AGCT	2 cut(s)	53, 101
Alw26I	GTCTC	2 cut(s)	323, 496
AlwI	GGATC	5 cut(s)	220, 295, 308, 563, 576
AoxI	GGCC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	2 cut(s)	300, 568
BanI	GGYRCC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	45
BccI	CCATC	1 cut(s)	534
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	323, 496
BlpI	GCTNAGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	302, 363, 570
BmrFI	CCNGG	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	323, 496
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	212, 300, 568
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	302, 363, 570
BspPI	GGATC	5 cut(s)	220, 295, 308, 563, 576
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	212, 300, 568
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	22, 268, 401
Bst6I	CTCTTC	3 cut(s)	116, 321, 488
BstDEI	CTNAG	3 cut(s)	102, 489, 580
BstKTI	GATC	3 cut(s)	215, 303, 571
BstMAI	GTCTC	2 cut(s)	323, 496
BstMBI	GATC	3 cut(s)	212, 300, 568
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	300, 568
BstYI	RGATCY	2 cut(s)	300, 568
BsuRI	GGCC	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	32, 473
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	61, 273, 472
CviAII	CATG	5 cut(s)	8, 174, 311, 374, 532
CviJI	RGCY	5 cut(s)	12, 53, 101, 185, 441
CviKI_1	RGCY	5 cut(s)	12, 53, 101, 185, 441
CviQI	GTAC	3 cut(s)	61, 273, 472
DdeI	CTNAG	3 cut(s)	102, 489, 580
DpnI	GATC	3 cut(s)	214, 302, 570
DpnII	GATC	3 cut(s)	212, 300, 568
DraI	TTTAAA	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	3 cut(s)	116, 321, 488
EarI	CTCTTC	3 cut(s)	116, 321, 488
Eco47I	GGWCC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	364
EcoT22I	ATGCAT	2 cut(s)	199, 244
FaeI	CATG	5 cut(s)	11, 177, 314, 377, 535
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FatI	CATG	5 cut(s)	7, 173, 310, 373, 531
FauI	CCCGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	12
Hin1II	CATG	5 cut(s)	11, 177, 314, 377, 535
HinfI	GANTC	2 cut(s)	47, 130
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	226, 371
Hpy188III	TCNNGA	3 cut(s)	292, 518, 612
Hpy8I	GTNNAC	2 cut(s)	226, 371
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	3 cut(s)	22, 268, 401
HpyCH4V	TGCA	3 cut(s)	197, 202, 242
HpyF3I	CTNAG	3 cut(s)	102, 489, 580
Hsp92II	CATG	5 cut(s)	11, 177, 314, 377, 535
Kzo9I	GATC	3 cut(s)	212, 300, 568
LpnPI	CCDG	5 cut(s)	38, 267, 270, 351, 378
MaeIII	GTNAC	3 cut(s)	3, 377, 389
MalI	GATC	3 cut(s)	214, 302, 570
MboI	GATC	3 cut(s)	212, 300, 568
MboII	GAAGA	6 cut(s)	50, 133, 158, 338, 443, 505
MflI	RGATCY	2 cut(s)	300, 568
MluCI	AATT	2 cut(s)	73, 160
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	203, 559
Mph1103I	ATGCAT	2 cut(s)	199, 244
MseI	TTAA	4 cut(s)	96, 180, 192, 420
MspA1I	CMGCKG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
NdeII	GATC	3 cut(s)	212, 300, 568
NlaIII	CATG	5 cut(s)	11, 177, 314, 377, 535
NlaIV	GGNNCC	3 cut(s)	302, 363, 570
NmuCI	GTSAC	2 cut(s)	377, 389
NsiI	ATGCAT	2 cut(s)	199, 244
NspI	RCATGY	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	302, 363, 570
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	300, 568
RsaI	GTAC	3 cut(s)	62, 274, 473
RsaNI	GTAC	3 cut(s)	61, 273, 472
SaqAI	TTAA	4 cut(s)	96, 180, 192, 420
Sau3AI	GATC	3 cut(s)	212, 300, 568
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	5 cut(s)	55, 103, 286, 370, 466
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	2 cut(s)	73, 160
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	22, 268, 401
TasI	AATT	2 cut(s)	73, 160
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	4 cut(s)	96, 180, 192, 420
Tru9I	TTAA	4 cut(s)	96, 180, 192, 420
TscAI	CASTG	2 cut(s)	32, 473
TseFI	GTSAC	2 cut(s)	377, 389
Tsp45I	GTSAC	2 cut(s)	377, 389
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	2 cut(s)	32, 473
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	314
Zsp2I	ATGCAT	2 cut(s)	199, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.