Rmu_sc0024024.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024024.1
Physical Location & Seq
Reverse (-)
1 .. 585
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024024.1_g000001.1.cds

Sequence Viewer

Length: 497 bp
atgcatttagccaaaaatggtatgttagagacatatgagatatggcataaacatggtgagaaattagatgctccacctcctccaattgttcaagatgatcttgaacctaatgttgtcattcagaatattttgaatgatgccttcccaattgttcaaggggctgaagatgttgacatgaatgagggtgtagaattatcagaggatgcattgggtgagatggcaaatgctatggggaatcagggagccaatgtacataggctacaagctgataagtatgaaaaattgcttacagaagcccaacgtgaattttttcctgcttgtgatagtagtcttttgacagttatggtcaaactcatgcactgcaaggtccttaatcattggacaaataagtcatttgatacaatgttggagactttgaatcagctttgtcctaaacctaataacattcctatgtcattctatgaagagaataagatgttaaaaaaattgggtctggg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

166

Amino Acids

18.73

Weight (kDa)

4.87

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 252
AgsI TTSAA 5 cut(s) 92, 104, 133, 155, 418
AluBI AGCT 2 cut(s) 266, 424
AluI AGCT 2 cut(s) 266, 424
Alw26I GTCTC 2 cut(s) 23, 404
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 68, 224
AvaII GGWCC 1 cut(s) 367
BccI CCATC 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 23, 404
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 3 cut(s) 58, 127, 193
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
BseGI GGATG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 23, 404
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 250
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 250
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 23, 404
BstMBI GATC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 53, 175, 355
CviJI RGCY 7 cut(s) 11, 161, 245, 259, 266, 296, 424
CviKI_1 RGCY 7 cut(s) 11, 161, 245, 259, 266, 296, 424
CviQI GTAC 1 cut(s) 251
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 367
EcoT22I ATGCAT 2 cut(s) 6, 208
FaeI CATG 3 cut(s) 56, 178, 358
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 3 cut(s) 52, 174, 354
FauNDI CATATG 1 cut(s) 34
FokI GGATG 1 cut(s) 215
Hin1II CATG 3 cut(s) 56, 178, 358
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 235, 418
HphI GGTGA 2 cut(s) 68, 224
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 123, 199
Hpy188III TCNNGA 2 cut(s) 92, 101
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 4 cut(s) 4, 206, 358, 363
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 3 cut(s) 56, 178, 358
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 76, 242
LpnPI CCDG 3 cut(s) 224, 327, 479
LweI GCATC 3 cut(s) 58, 127, 193
MaeII ACGT 1 cut(s) 301
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 176, 476
MfeI CAATTG 2 cut(s) 84, 147
MluCI AATT 7 cut(s) 62, 84, 147, 191, 281, 305, 485
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 4 cut(s) 87, 90, 175, 193
Mph1103I ATGCAT 2 cut(s) 6, 208
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 2 cut(s) 372, 479
MslI CAYNNNNRTG 2 cut(s) 51, 449
MunI CAATTG 2 cut(s) 84, 147
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 56, 178, 358
NlaIV GGNNCC 1 cut(s) 244
NsiI ATGCAT 2 cut(s) 6, 208
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 235, 418
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 367
PspPPI RGGWCCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 2 cut(s) 51, 449
SaqAI TTAA 2 cut(s) 372, 479
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 367
SetI ASST 7 cut(s) 79, 109, 268, 304, 369, 426, 439
SfaNI GCATC 3 cut(s) 58, 127, 193
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 51, 449
Sse9I AATT 7 cut(s) 62, 84, 147, 191, 281, 305, 485
SspI AATATT 1 cut(s) 127
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 304
TasI AATT 7 cut(s) 62, 84, 147, 191, 281, 305, 485
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 2 cut(s) 235, 418
Tru1I TTAA 2 cut(s) 372, 479
Tru9I TTAA 2 cut(s) 372, 479
TscAI CASTG 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 191, 291, 477
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 309
Zsp2I ATGCAT 2 cut(s) 6, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.