FvH4_7g02480

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001541
Physical Location & Seq
Reverse (-)
2768295 .. 2774392
6098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02480.t2

Sequence Viewer

Length: 504 bp
ATGACTATTGAAATCGACCAGACCATACCTGTTATCCGGATGCATTTAGCTGCTGTTGGTATGTTAGAGACTGATGAAATATGGCATAGACATGGTGAAAAAGTTGGAGCTCCACCTCCTCCTATTGTTCAAGATGAACCTGAACCCGATTATTTCGTTCATAATATGTTGAATGATATATTCCCAATTTTTGAAGAGGCTGAGGATGATGATATGAGCATGGGGGATGATACAAGTGAGATGGGAGATGCTATGGAAAATCAGGGTGCTAATGTACATAGGCTACAAGCTGATACATATGAGGATTTGCGTGCTGAAGCAAATCGGGAGTTTTCAACTGAACCTGAAATCCATGTGCTTAGTGACAAGGACTTAGAACAGAGTAGTTCTCATGATGTCGATTTCATTGATGATGATCCTGAAGATGAAGAAATGTTGTCCGCAGATGAGGAAAACGCTGAGAATAACGAGGATGATTATGATAGATATAAGATTGCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

4.05

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 1 cut(s) 441
AclWI GGATC 1 cut(s) 410
AcuI CTGAAG 2 cut(s) 336, 441
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 5 cut(s) 11, 131, 172, 194, 336
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 50, 110, 290
AluI AGCT 3 cut(s) 50, 110, 290
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmsI GCATC 2 cut(s) 30, 238
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu10I CCTNAGC 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 36
BseGI GGATG 4 cut(s) 45, 211, 232, 478
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 2 cut(s) 192, 450
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 36
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 193, 451
BspEI TCCGGA 1 cut(s) 36
BspHI TCATGA 1 cut(s) 391
BspPI GGATC 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 274
BssMI GATC 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 201, 359, 373, 459
BstF5I GGATG 4 cut(s) 45, 211, 232, 478
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 37
BtsCI GGATG 4 cut(s) 45, 211, 232, 478
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 391
Csp6I GTAC 1 cut(s) 275
CviAII CATG 4 cut(s) 92, 220, 353, 392
CviJI RGCY 5 cut(s) 50, 110, 200, 283, 290
CviKI_1 RGCY 5 cut(s) 50, 110, 200, 283, 290
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 4 cut(s) 201, 359, 373, 459
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 336, 441
EcoICRI GAGCTC 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 4 cut(s) 95, 223, 356, 395
FatI CATG 4 cut(s) 91, 219, 352, 391
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 4 cut(s) 52, 218, 239, 485
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HapII CCGG 1 cut(s) 37
Hin1II CATG 4 cut(s) 95, 223, 356, 395
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 107
Hpy188III TCNNGA 5 cut(s) 37, 131, 326, 392, 419
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 4 cut(s) 201, 359, 373, 459
Hsp92II CATG 4 cut(s) 95, 223, 356, 395
Kpn2I TCCGGA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 2 cut(s) 107, 115
LpnPI CCDG 7 cut(s) 32, 42, 50, 153, 248, 357, 432
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 30, 238
MaeIII GTNAC 1 cut(s) 362
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 3 cut(s) 206, 434, 440
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 7 cut(s) 126, 129, 190, 196, 295, 442, 463
Mph1103I ATGCAT 1 cut(s) 45
MroI TCCGGA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 1 cut(s) 37
NdeI CATATG 1 cut(s) 298
NdeII GATC 1 cut(s) 415
NlaIII CATG 4 cut(s) 95, 223, 356, 395
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 45
PagI TCATGA 1 cut(s) 391
PkrI GCNGC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 112
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 112
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 415
SduI GDGCHC 1 cut(s) 112
SetI ASST 7 cut(s) 31, 52, 112, 118, 142, 292, 346
SfaNI GCATC 2 cut(s) 30, 238
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 441
SstI GAGCTC 1 cut(s) 112
TaqI TCGA 2 cut(s) 15, 399
TasI AATT 1 cut(s) 186
TatI WGTACW 1 cut(s) 274
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 5 cut(s) 90, 149, 150, 394, 441
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.