Rmu_sc0005000.1_g000010

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005000.1
OG0001541
Physical Location & Seq
Forward (+)
52428 .. 53033
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005000.1_g000010.1.cds

Sequence Viewer

Length: 606 bp
atgacgattgggtcccataatggtgaaccttgcaccttttatgggagtctggatagtgtggttcaatttcattttcgaaaaaagtacagtacaattctttttaaatgtcaatggtataattctgatcccaaaaagatgaagtttgactaccatttgacgtcgttaaacgttaaaaaccaatggtaccagcatgatccttatgtgctagcaaaacaagcccataaggtgttttatcttgatgacatgaaattgggacatccttggaaagttgtccagaagattcaatataggcacttgtgggatgttccagaaagagaagaagacgaagatcttgtagaccatgataatgatctcggtgacgaggacgatgacgctaatatatgggaggttcacgtagaagatgatgaaactagtacatctttgcgcagacatgatgtggaacttgaaactattatcctcaacaacacaaataaagaaaagaatgcagcagatgacggtgattttattgacgatgattctacggatgataatcttatgttggagcataatagagctcttggtgaagaagaattactaggtgatcatagtgacacaaatagtgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

201

Amino Acids

23.65

Weight (kDa)

4.57

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 1 cut(s) 161
Acc16I TGCGCA 1 cut(s) 425
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 336
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 119, 188
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 4 cut(s) 86, 91, 185, 415
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 3 cut(s) 65, 284, 446
AhlI ACTAGT 1 cut(s) 410
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 556
AlwI GGATC 2 cut(s) 119, 188
ApeKI GCWGC 1 cut(s) 485
Asp718I GGTACC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 5 cut(s) 35, 368, 509, 572, 590
AsuII TTCGAA 1 cut(s) 76
AsuNHI GCTAGC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 12
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 556
BarI GAAGNNNNNNTAC 4 cut(s) 131, 163, 555, 587
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 1 cut(s) 497
BclI TGATCA 1 cut(s) 580
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 4 cut(s) 206, 411, 575, 604
BglII AGATCT 1 cut(s) 328
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 3 cut(s) 13, 14, 185
BmtI GCTAGC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 2 cut(s) 348, 528
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse8I GATNNNNATC 2 cut(s) 348, 528
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 3 cut(s) 256, 307, 529
BseJI GATNNNNATC 2 cut(s) 348, 528
BseLI CCNNNNNNNGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 556
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 5 cut(s) 124, 193, 328, 349, 580
BspLI GGNNCC 3 cut(s) 13, 14, 185
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 2 cut(s) 119, 188
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 5 cut(s) 124, 193, 328, 349, 580
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 89, 497
BstACI GRCGYC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 207
BstF5I GGATG 3 cut(s) 256, 307, 529
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 5 cut(s) 127, 196, 331, 352, 583
BstMBI GATC 5 cut(s) 124, 193, 328, 349, 580
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 497
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BtsCI GGATG 3 cut(s) 256, 307, 529
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 1 cut(s) 380
Csp6I GTAC 4 cut(s) 85, 90, 184, 414
CviAII CATG 4 cut(s) 191, 244, 341, 431
CviJI RGCY 2 cut(s) 218, 554
CviKI_1 RGCY 2 cut(s) 218, 554
CviQI GTAC 4 cut(s) 85, 90, 184, 414
DpnI GATC 5 cut(s) 126, 195, 330, 351, 582
DpnII GATC 5 cut(s) 124, 193, 328, 349, 580
DraI TTTAAA 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 554
EcoICRI GAGCTC 1 cut(s) 554
EcoO109I RGGNCCY 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 194, 247, 344, 434
FaqI GGGAC 1 cut(s) 267
FatI CATG 4 cut(s) 190, 243, 340, 430
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 3 cut(s) 243, 314, 536
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 4 cut(s) 206, 411, 575, 604
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 486
HgaI GACGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 4 cut(s) 194, 247, 344, 434
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 3 cut(s) 46, 280, 515
HphI GGTGA 5 cut(s) 35, 368, 509, 572, 590
Hpy166II GTNNAC 3 cut(s) 26, 337, 391
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 4 cut(s) 50, 236, 274, 308
Hpy8I GTNNAC 3 cut(s) 26, 337, 391
Hpy99I CGWCG 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 89, 497
HpyCH4IV ACGT 3 cut(s) 158, 168, 393
HpyCH4V TGCA 2 cut(s) 33, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpySE526I ACGT 3 cut(s) 158, 168, 393
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 4 cut(s) 194, 247, 344, 434
HspAI GCGC 1 cut(s) 424
KflI GGGWCCC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 5 cut(s) 124, 193, 328, 349, 580
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 4 cut(s) 35, 200, 287, 321
Lsp1109I GCAGC 1 cut(s) 497
MaeI CTAG 4 cut(s) 206, 411, 575, 604
MaeII ACGT 3 cut(s) 158, 168, 393
MaeIII GTNAC 3 cut(s) 356, 587, 599
MalI GATC 5 cut(s) 126, 195, 330, 351, 582
MboI GATC 5 cut(s) 124, 193, 328, 349, 580
MboII GAAGA 7 cut(s) 289, 329, 332, 338, 410, 575, 578
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 5 cut(s) 65, 93, 118, 248, 569
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 3 cut(s) 355, 379, 467
MseI TTAA 3 cut(s) 102, 164, 171
MslI CAYNNNNRTG 2 cut(s) 21, 345
Mva1269I GAATGC 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 5 cut(s) 124, 193, 328, 349, 580
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 4 cut(s) 194, 247, 344, 434
NlaIV GGNNCC 3 cut(s) 13, 14, 185
NmuCI GTSAC 3 cut(s) 356, 587, 599
NsbI TGCGCA 1 cut(s) 425
NspV TTCGAA 1 cut(s) 76
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 280, 515
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 556
Psp1406I AACGTT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 13, 14, 185
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 86, 91, 185, 415
RsaNI GTAC 4 cut(s) 85, 90, 184, 414
RseI CAYNNNNRTG 2 cut(s) 21, 345
SacI GAGCTC 1 cut(s) 556
SaqAI TTAA 3 cut(s) 102, 164, 171
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 5 cut(s) 124, 193, 328, 349, 580
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 556
SetI ASST 9 cut(s) 31, 38, 161, 171, 228, 390, 396, 556, 580
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 2 cut(s) 21, 345
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 5 cut(s) 65, 93, 118, 248, 569
SspMI CTAG 4 cut(s) 206, 411, 575, 604
SstI GAGCTC 1 cut(s) 556
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 89, 497
TaiI ACGT 3 cut(s) 161, 171, 396
TaqI TCGA 1 cut(s) 76
TasI AATT 5 cut(s) 65, 93, 118, 248, 569
TatI WGTACW 3 cut(s) 84, 89, 413
TfiI GAWTC 2 cut(s) 280, 515
Tru1I TTAA 3 cut(s) 102, 164, 171
Tru9I TTAA 3 cut(s) 102, 164, 171
TseFI GTSAC 3 cut(s) 356, 587, 599
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 3 cut(s) 356, 587, 599
TspDTI ATGAA 4 cut(s) 59, 152, 260, 420
TspGWI ACGGA 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 4 cut(s) 206, 411, 575, 604
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.